Mammals Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of mammals only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 aardvark (SDZICR_OR568_19922 2012 Broad) Orycteropus afer afer GCF_000298275.1_OryAfe1.0 22,509 4,444,080,527 411,144 1,028,739,906 39.08
2 African grass rat (maternal 2020) Arvicanthis niloticus GCA_011750645.1_mArvNil1.mat 1,610 2,486,141,644 1,526 27,535,453 37.17
3 African grass rat (paternal 2020) Arvicanthis niloticus GCA_011762545.1_mArvNil1.pat 1,740 2,517,706,780 1,563 57,877,291 36.53
4 African grass rat (paternal X 2020) Arvicanthis niloticus GCF_011762505.1_mArvNil1.pat.X 1,595 2,496,761,438 1,624 20,289,527 37.17
5 African hunting dog Lycaon pictus GCA_001887905.1_LycPicSAfr1.0 803 2,358,143,818 1,415,298 171,699,382 37.12
6 African savanna elephant (2009 refseq) Loxodonta africana GCF_000001905.1_Loxafr3.0 2,352 3,196,738,102 93,514 78,195,493 56.15
7 African savanna elephant (hap1 mLoxAfr1 2023) Loxodonta africana GCA_030020305.1_mLoxAfr1.hap1 1,084 3,575,747,632 169 5,227,145 50.50
8 African savanna elephant (hap2 mLoxAfr1 2023) Loxodonta africana GCA_030014295.1_mLoxAfr1.hap2 880 3,540,893,228 231 3,688,568 49.48
9 agile gracile mouse opossum Gracilinanus agilis GCF_016433145.1_AgileGrace 60,714 3,701,033,721 85,142 305,455,367 45.04
10 alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U) Vicugna pacos GCF_000164845.4_VicPac3.2 77,389 2,118,870,233 166,272 88,415,415 31.82
11 Alpine marmot (2019) Marmota marmota marmota GCF_001458135.2_marMar 14,031 2,506,852,125 88,858 97,149,795 30.32
12 Alvarez's mastiff bat (A012 2023) Molossus alvarezi GCA_031001765.1_BBF_mMolAlv_v1 187 2,395,140,990 1,182 236,400 38.99
13 American beaver (Ward 2017 refseq) Castor canadensis GCF_001984765.1_C.can_genome_v1.0 21,157 2,518,306,565 3,321 331,911 33.78
14 American bison (2014 refseq) Bison bison bison GCF_000754665.1_Bison_UMD1.0 128,431 2,828,031,685 341,984 195,767,988 37.67
15 American black bear (L20-20 alternate hap 2022) Ursus americanus GCA_024610745.1_mUrsAme1.0.a 77,311 2,885,111,784 0 0 35.68
16 American black bear (L20-20 primary hap 2022) Ursus americanus GCA_024610735.1_mUrsAme1.0.p 317 2,524,264,886 22 2,200 35.55
17 American black bear (UA15103 2021) Ursus americanus GCF_020975775.1_gsc_jax_bbear_1.0 2,213 2,351,964,450 0 0 34.58
18 American mink (2018) Neogale vison GCA_900108605.1_NNQGG.v01 7,175 2,447,189,291 154,172 173,024,279 36.01
19 American mink (M4711 2021 Dalhousie U) Neogale vison GCF_020171115.1_ASM_NN_V1 183 2,681,215,271 0 0 39.20
20 American pika 3.0 (2012 Broad refseq) Ochotona princeps GCF_000292845.1_OchPri3.0 10,420 2,229,835,716 122,542 285,847,846 26.73
21 American pika 4.0 (UAM:Mamm:113957 2020) Ochotona princeps GCF_014633375.1_OchPri4.0 9,351 2,231,492,728 124,941 287,505,412 26.71
22 American pika (hap1 2023) Ochotona princeps GCF_030435755.1_mOchPri1.hap1 5,864 2,555,444,530 432 86,229 43.65
23 American pika (hap2 2023) Ochotona princeps GCA_030435715.1_mOchPri1.hap2 6,117 2,534,779,560 375 74,504 45.99
24 Amur tiger (TaeGuk 2013 refseq) Panthera tigris altaica GCF_000464555.1_PanTig1.0 1,479 2,391,082,183 155,553 58,232,500 31.80
25 Antarctic minke whale Balaenoptera bonaerensis GCA_000978805.1_ASM97880v1 421,444 2,234,641,557 299,456 14,335,434 40.90
26 Antillean ghost-faced bat Mormoops blainvillei GCA_004026545.1_MorMeg_v1_BIUU 205,259 2,111,750,309 1,835 183,500 30.69
27 aoudad Ammotragus lervia GCA_002201775.1_ALER1.0 77,320 2,650,836,958 186,672 107,459,073 43.25
28 Arabian camel (Drom800 2019 refseq) Camelus dromedarius GCF_000803125.2_CamDro3 21,070 2,169,363,382 47,342 17,043,352 33.83
29 Arabian camel (paternal 2024) Camelus dromedarius GCA_036321535.1_mCamDro1.pat 172 2,306,619,778 195 39,000 33.51
30 Arabian camel (hap2 2024) Camelus dromedarius GCA_036321565.1_mCamDro1.hap2 173 2,086,495,379 210 42,000 31.48
31 Arctic fox (Blue_001 2021 refseq) Vulpes lagopus GCF_018345385.1_ASM1834538v1 929 2,345,550,353 529 52,702 41.30
32 Arctic ground squirrel Urocitellus parryii GCF_003426925.1_ASM342692v1 15,883 2,520,500,478 2,429,461 267,022,442 29.24
33 Asian palm civet Paradoxurus hermaphroditus GCA_004024585.1_ParHer_v1_BIUU 438,125 2,477,229,103 4,533 453,300 40.35
34 Asiatic elephant (mEleMax1 alternate hap 2022) Elephas maximus indicus GCA_024166345.1_mEleMax1_alternate_haplotype 6,361 2,952,809,375 0 0 47.31
35 Asiatic elephant (mEleMax1 primary hap 2022) Elephas maximus indicus GCF_024166365.1_mEleMax1_primary_haplotype 64 3,401,247,148 126 3,333,681 48.67
36 Asiatic mouflon (Amuf_v1 2020) Ovis orientalis GCA_014523465.1_CAU_Oori_1.0 128 2,652,567,896 257 8,408,400 47.04
37 Asiatic tapir (hap1 2023) Tapirus indicus GCA_031878655.1_mTapInd1.hap1 259 2,498,393,425 79 15,800 38.08
38 Asiatic tapir (hap2 2023) Tapirus indicus GCA_031878705.1_mTapInd1.hap2 193 2,477,445,429 92 18,400 38.23
39 ass (Dezhou 2021) Equus asinus GCF_016077325.2_ASM1607732v2 50 2,431,907,375 1,922 3,529,454 41.54
40 ass (Maral har 2015 refseq) Equus asinus GCF_001305755.1_ASM130575v1 2,167 2,391,051,217 69,593 33,114,414 40.30
41 Australian echidna (mTacAcu1 alternate hap 2020) Tachyglossus aculeatus GCA_015852515.1_mTacAcu1.alt 3,482 1,885,160,879 26 440,103 56.70
42 Australian echidna (mTacAcu1 primary hap 2020) Tachyglossus aculeatus GCF_015852505.1_mTacAcu1.pri 310 2,213,004,214 524 30,817,383 55.70
43 Bactrian camel (Alxa 2014 refseq) Camelus bactrianus GCF_000767855.1_Ca_bactrianus_MBC_1.0 35,455 1,992,663,268 31,980 13,666,687 33.85
44 banded mongoose Mungos mungo GCA_004023785.1_MunMun_v1_BIUU 312,364 2,448,211,634 4,510 451,000 40.54
45 bank vole Myodes glareolus GCF_902806735.1_Bank_vole1_10x 636 2,323,059,002 53,506 32,329,500 31.51
46 banner-tailed kangaroo rat Dipodomys spectabilis GCF_019054845.1_ASM1905484v1 2,026 2,844,766,008 0 0 48.77
47 beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020) Delphinapterus leucas GCA_009917745.1_GSC_cook_1.0 25,811 2,389,559,792 27,070 58,030,126 42.50
48 beluga whale (GAN/ISIS: 26980492/103006 v3 2019) Delphinapterus leucas GCF_002288925.2_ASM228892v3 5,905 2,362,774,659 24,414 35,865,177 43.09
49 big brown bat (BU_THK_EF1 2012) Eptesicus fuscus GCF_000308155.1_EptFus1.0 6,788 2,026,627,185 160,269 215,248,386 28.91
50 big brown bat (TK198812 2023) Eptesicus fuscus GCF_027574615.1_DD_ASM_mEF_20220401 48 2,008,057,866 75 28,557 37.06
51 bighorn sheep Ovis canadensis GCA_004026945.1_OviCan_v1_BIUU 1,048,136 2,863,658,823 9,412 941,200 50.76
52 black flying fox Pteropus alecto GCF_000325575.1_ASM32557v1 65,598 1,985,975,446 104,566 41,333,505 33.38
53 black-footed ferret (SB6536 2022) Mustela nigripes GCF_022355385.1_MUSNIG.SB6536 20,575 2,498,549,507 33,042 82,348,172 32.10
54 black rat Rattus rattus GCF_011064425.1_Rrattus_CSIRO_v1 2,173 2,382,787,281 6,158 553,563 41.70
55 black-footed cat Felis nigripes GCA_004023925.1_FelNig_v1_BIUU 590,124 2,428,424,918 13,476 1,347,600 44.13
56 black-lipped pika Ochotona curzoniae GCF_017591425.1_NIBS_Ocur_1.0 2,214 2,086,129,077 54 6,809 31.29
57 black rhinoceros (mBicDic1 primary hap 2021) Diceros bicornis minor GCF_020826845.1_mDicBic1.mat.cur 1,076 3,005,535,620 215 1,368,861 40.15
58 black rhinoceros (mBicDic1 alternate hap 2021) Diceros bicornis minor GCA_020826835.1_mDicBic1.pat.decon 1,199 3,044,793,931 178 903,692 40.41
59 black rhinoceros (BS38 2019 Broad) Diceros bicornis GCA_004027315.1_DicBicMic_v1_BIUU 2,022,658 3,020,704,222 7,256 725,600 40.33
60 Blainville's beaked whale (alternate hap 2022) Mesoplodon densirostris GCA_025094165.1_mMesDen1_alternate_haplotype 5,197 2,376,281,363 1 33 41.16
61 Blainville's beaked whale (primary hap 2022 refseq) Mesoplodon densirostris GCF_025265405.1_mMesDen1_primary_haplotype 74 2,683,391,478 97 700,303 41.79
62 blue whale (alternate hap JJ_BM4_2016_0621 2019) Balaenoptera musculus GCA_008658375.1_mBalMus1_alternate 12,574 1,876,085,767 0 0 43.51
63 Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020) Balaenoptera musculus GCA_008658375.2_mBalMus1.alt.v2 10,996 1,835,388,607 3 90 43.53
64 blue whale (JJ_BM4_2016_0621 v3 primary hap 2020) Balaenoptera musculus GCF_009873245.2_mBalMus1.pri.v3 106 2,374,868,943 886 25,937,142 43.76
65 bobcat (Redwood Valley CCGP_SWC_20201006 alternate hap 2022) Lynx rufus GCA_022079275.1_mLynRuf1.a 68,111 3,320,153,114 4,716 471,601 33.84
66 bobcat (Redwood Valley CCGP_SWC_20201006 primary hap 2022) Lynx rufus GCF_022079265.1_mLynRuf1.p 75 2,439,239,374 24 2,405 43.33
67 boreal woodland reindeer (boreal CA-31 2023) Rangifer tarandus caribou GCA_019903745.2_ULRtarCaribou_2v2 12,266 2,577,110,347 34,682 77,970,589 36.44
68 Botta's pocket gopher (bottae MVZ:Mamm:240275 alternate hap 2022) Thomomys bottae GCA_024803775.1_mThoBot1.0.a 3,340 3,469,049,410 124 12,400 61.87
69 Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022) Thomomys bottae GCA_024803745.1_mThoBot1.0.p 2,792 2,845,630,888 106 10,600 57.15
70 Botta's pocket gopher (hap1 2023) Thomomys bottae GCA_031878675.1_mThoBot2.hap1 630 2,025,650,949 775 154,825 40.80
71 Botta's pocket gopher (hap2 2023) Thomomys bottae GCA_031878665.1_mThoBot2.hap2 340 1,879,249,320 541 108,200 39.22
72 boutu (hap1 2024) Inia geoffrensis GCA_036417435.1_mIniGeo1.hap1 903 2,749,362,370 284 56,265 42.66
73 boutu (hap2 2024) Inia geoffrensis GCA_036417475.1_mIniGeo1.hap2 800 2,540,437,634 240 47,643 41.43
74 Brandt's bat Myotis brandtii GCF_000412655.1_ASM41265v1 169,750 2,107,242,811 155,664 125,473,085 31.07
75 Brazilian free-tailed bat (primary hap 2023) Tadarida brasiliensis GCA_030848825.1_DD_mTadBra1_pri 148 2,283,188,801 20 5,952 36.16
76 Brazilian guinea pig Cavia aperea GCA_000688575.1_CavAp1.0 3,131 2,716,396,567 2,565,595 967,255,733 21.06
77 Brazilian tapir Tapirus terrestris GCA_004025025.1_TapTer_v1_BIUU 803,506 2,571,458,752 2,273 227,300 38.38
78 brown bear (v2.0 North America Adak 2023) Ursus arctos GCF_023065955.2_UrsArc2.0 362 2,423,418,479 250 50,000 33.27
79 brown bear (GAN/ISIS:MIG12 v2 2018) Ursus arctos horribilis GCF_003584765.2_ASM358476v2 6,261 2,327,457,412 17,380 16,213,257 40.61
80 brown big-eared bat (primary hap 2023) Plecotus auritus GCA_963455305.1_mPleAur1.1 65 2,163,221,563 1,237 247,441 39.67
81 brown-throated sloth Bradypus variegatus GCA_004027775.1_BraVar_v1_BIUU 1,771,805 1,502,475,299 462 46,200 37.97
82 cactus mouse (2023) Peromyscus eremicus GCF_949786415.1_PerEre_H2_v1 4,297 2,916,563,079 2,603 520,600 52.77
83 California mouse (IS 2022) Peromyscus californicus insignis GCF_007827085.1_ASM782708v3 237 2,467,923,528 547 122,718 45.11
84 California sea lion (mZalCal1 alternate hap 2020) Zalophus californianus GCA_009762295.2_mZalCal1.alt.v2 3,096 1,970,935,876 0 0 42.95
85 California sea lion (alternate hap 2019) Zalophus californianus GCA_009762295.1_mZalCal1.alt 3,093 1,970,798,971 0 0 42.94
86 California sea lion (v2 primary hap 2020) Zalophus californianus GCF_009762305.2_mZalCal1.pri.v2 47 2,409,685,272 185 18,537,776 43.36
87 California sea lion (LMU 2018 refseq) Zalophus californianus GCF_900631625.1_zalCal2.2 10,423 2,372,369,564 47,716 4,767,684 43.23
88 California vole (kernensis MVZ Mamm 240107 primary hap 2023) Microtus californicus GCA_028537955.1_mMicCal1.0.hap1 350 2,299,490,594 51 5,100 42.37
89 California vole (kernensis MVZ Mamm 240107 alternate hap 2023) Microtus californicus GCA_028537755.1_mMicCal1.0.hap2 310 2,142,917,481 43 4,300 33.13
90 Canada lynx (alternate hap LIC74 2019) Lynx canadensis GCA_007474575.1_mLynCan4_v1.alt 15,033 1,415,234,291 3 143 43.55
91 Canada lynx (LIC74 v2 alternate hap 2020) Lynx canadensis GCA_007474575.2_mLynCan4.alt.v2 15,041 1,416,309,019 5 743 43.55
92 Canada lynx (LIC74 v2 primary hap 2020) Lynx canadensis GCF_007474595.2_mLynCan4.pri.v2 54 2,407,810,255 842 2,779,346 43.72
93 Cantor's roundleaf bat Hipposideros galeritus GCA_004027415.1_HipGal_v1_BIUU 840,200 2,440,750,851 6,366 636,600 33.46
94 Cape elephant shrew Elephantulus edwardii GCF_000299155.1_EleEdw1.0 8,768 3,843,982,861 279,394 528,111,014 42.36
95 Cape golden mole (2012 Broad) Chrysochloris asiatica GCF_000296735.1_ChrAsi1.0 20,500 4,210,110,458 370,844 846,546,142 41.19
96 Cape rock hyrax (US060 2019 Broad) Procavia capensis GCA_004026925.1_ProCapCap_v1_BIUU 1,044,737 3,684,048,458 4,203 420,300 54.49
97 capybara Hydrochoerus hydrochaeris GCA_004027455.1_HydHyd_v1_BIUU 655,342 2,734,590,088 5,747 574,700 35.17
98 carabao (swamp buffalo K-KA32 2023) Bubalus kerabau GCF_029407905.1_PCC_UOA_SB_1v2 115 2,898,492,518 21 4,200 45.23
99 cattle (Hereford L1 Dominette 01449 42190680 v2.0 2023 USDA) Bos taurus GCF_002263795.3_ARS-UCD2.0 1,958 2,770,686,120 386 28,162 42.12
100 cattle (Hereford UMD_3.1.1 2014) Bos taurus GCF_000003055.6_Bos_taurus_UMD_3.1.1 3,144 2,670,139,648 74,464 20,740,269 48.66
101 Chacoan peccary (BS20 v2 2019 Broad) Catagonus wagneri GCA_004024745.2_CatWag_v2_BIUU_UCD 1,183,730 2,640,067,814 57,013 47,532,400 42.56
102 cheetah (Ajub_Pintada_27869175 2022) Acinonyx jubatus GCF_027475565.1_VMU_Ajub_asm_v1.0 195 2,377,417,351 22 4,400 35.16
103 cheetah (Rico 2018) Acinonyx jubatus GCF_003709585.1_Aci_jub_2 3,220 2,384,851,327 24,173 10,703,252 42.70
104 Chinese forest musk deer (Sichuan 2022) Moschus berezovskii GCF_022376915.1_ASM2237691v1 2,446 2,813,371,744 1,781 809,203 43.80
105 Chinese hamster (17A/GY CHO 2020) Cricetulus griseus GCF_003668045.3_CriGri-PICRH-1.0 647 2,366,634,374 4,164 2,425,904 33.79
106 Chinese hamster (CHO v1 2011 BGI) Cricetulus griseus GCF_000223135.1_CriGri_1.0 109,152 2,399,786,748 156,635 81,654,506 31.97
107 Chinese hamster (CHO v2 2017 Eagle Genomics Ltd) Cricetulus griseus GCA_900186095.1_CHOK1S_HZDv1 8,264 2,358,151,106 63,334 34,242,448 33.24
108 Chinese hamster (CHO-K1 CHOZN v2.4 2022) Cricetulus griseus GCA_026545065.1_CHOZN_v2.4 311,581 3,241,143,680 924,541 937,567,500 22.05
109 Chinese pangolin (hap1 mManPen7 2023) Manis pentadactyla GCF_030020395.1_mManPen7.hap1 661 2,840,164,579 383 6,563,020 39.02
110 Chinese pangolin (hap2 mManPen7 2023) Manis pentadactyla GCA_030020945.1_mManPen7.hap2 700 2,869,287,698 190 14,873,332 39.52
111 Chinese pangolin (2020 Yunnan U) Manis pentadactyla GCF_014570555.1_YNU_ManPten_2.0 4,694 2,399,660,488 34,903 107,236,753 34.03
112 Chinese pangolin (MPE899 2014 WashU) Manis pentadactyla GCA_000738955.1_M_pentadactyla-1.1.1 92,769 2,204,724,663 257,424 205,794,437 31.28
113 Chinese rufous horseshoe bat Rhinolophus sinicus GCA_001888835.1_ASM188883v1 63,439 2,073,344,508 212,601 58,156,114 32.94
114 Chinese tree shrew Tupaia chinensis GCF_000334495.1_TupChi_1.0 50,750 2,846,580,235 191,695 140,191,100 38.05
115 chiru Pantholops hodgsonii GCA_000400835.1_PHO1.0 15,058 2,696,869,832 283,069 188,899,892 40.51
116 clouded leopard (mNeoNeb1 alternate hap 2023) Neofelis nebulosa GCA_028018655.1_mNeoNeb1.alt 10,377 1,980,212,524 0 0 33.41
117 clouded leopard (mNeoNeb1 primary hap 2023 refseq) Neofelis nebulosa GCF_028018385.1_mNeoNeb1.pri 33 2,468,345,093 181 1,363,852 34.87
118 common bottlenose dolphin (paternal 2020) Tursiops truncatus GCA_011762515.1_mTurTru1.pat 1,166 2,378,995,196 868 45,794,633 45.09
119 common bottlenose dolphin (maternal 2020) Tursiops truncatus GCA_011762535.1_mTurTru1.mat 985 2,385,753,970 649 6,418,241 46.07
120 common bottlenose dolphin (maternal Y refseq 2020) Tursiops truncatus GCF_011762595.1_mTurTru1.mat.Y 362 2,378,522,213 674 6,222,516 46.09
121 common bottlenose dolphin (MMES2002162SC 2016 refseq) Tursiops truncatus GCF_001922835.1_NIST_Tur_tru_v1 2,648 2,132,516,271 114,003 12,216,051 43.67
122 common brushtail (alternate hap 2020) Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt 12,133 2,591,928,569 313 24,688 40.15
123 common brushtail (refseq 2020) Trichosurus vulpecula GCF_011100635.1_mTriVul1.pri 212 3,359,347,707 1,796 18,696,463 40.57
124 common pipistrelle (2020) Pipistrellus pipistrellus GCA_903992545.1_mPipPip1.1 323 1,763,439,233 1,546 469,367 34.71
125 common pipistrelle (alternate hap 2020) Pipistrellus pipistrellus GCA_903992515.1_mPipPip1.1_alternate_haplotype 10,447 1,579,816,813 12 2,732 33.96
126 common pipistrelle (Broad 2019) Pipistrellus pipistrellus GCA_004026625.1_PipPip_v1_BIUU 726,104 2,090,670,443 10,870 1,087,000 37.98
127 common vampire bat (HL8 primary hap 2022 refseq) Desmodus rotundus GCF_022682495.1_HLdesRot8A 573 2,113,489,943 611 255,063 32.58
128 common vampire bat (HL8 alternate hap 2022) Desmodus rotundus GCA_022682395.1_HLdesRot8B 430 1,976,149,209 580 232,283 31.24
129 common vampire bat (v3 DRU21DN04 2018) Desmodus rotundus GCF_002940915.2_ASM294091v3 29,118 2,063,540,067 54,246 45,924,706 28.98
130 common warthog (WHEZ1 2021) Phacochoerus africanus GCF_016906955.1_ROS_Pafr_v1 194 2,435,083,091 523 9,510,001 36.45
131 common wombat Vombatus ursinus GCF_900497805.2_bare-nosed_wombat_genome_assembly 14,183 3,483,711,260 67,461 11,418,651 41.89
132 creeping vole Microtus oregoni GCF_018167655.1_Mior012 2,147 3,017,107,361 0 0 40.66
133 crested porcupine Hystrix cristata GCA_004026905.1_HysCri_v1_BIUU 1,136,598 2,470,917,678 4,351 435,100 33.81
134 Cuvier's beaked whale Ziphius cavirostris GCA_004364475.1_ZipCav_v1_BIUU 3,758,276 3,150,417,206 3,229 322,900 43.63
135 Damara mole-rat DMR 1.0 (2014 BGI) Fukomys damarensis GCF_000743615.1_DMR_v1.0 74,730 2,333,892,479 87,815 47,907,697 30.66
136 Damara mole-rat DMR 1.0 HiC (2020 DNA Zoo) Fukomys damarensis GCF_012274545.1_DMR_v1.0_HiC 73,970 2,334,375,022 88,899 48,373,868 30.61
137 dassie-rat Petromus typicus GCA_004026965.1_PetTyp_v1_BIUU 910,679 2,389,366,989 9,645 964,500 34.49
138 Daubenton's bat (primary hap 2023 refseq) Myotis daubentonii GCF_963259705.1_mMyoDau2.1 121 2,127,807,131 1,099 219,800 38.85
139 Daubenton's bat (alternate hap 2023) Myotis daubentonii GCA_963242275.1_mMyoDau2.1_alternate_haplotype 4,930 1,938,252,784 0 0 37.25
140 Daurian ground squirrel Spermophilus dauricus GCA_002406435.1_ASM240643v1 360,804 3,106,271,744 141,850 119,321,120 33.08
141 David's myotis bat Myotis davidii GCF_000327345.1_ASM32734v1 101,769 2,059,799,708 223,511 181,337,721 29.57
142 degu (3935 2012 refseq) Octodon degus GCF_000260255.1_OctDeg1.0 7,134 2,995,882,938 252,772 469,628,246 29.31
143 desert hamster (2022) Phodopus roborovskii GCF_943737965.1_PHOROB 2,079 2,384,239,561 0 0 32.63
144 Desmarest's hutia Capromys pilorides GCA_004027915.1_CapPil_v1_BIUU 2,352,358 3,023,850,356 3,492 349,200 35.30
145 dingo (2020 Alpine COOINDA U.NSW) Canis lupus dingo GCF_012295265.1_UNSW_AlpineDingo_1.0 477 2,398,209,015 325 7,414,530 42.77
146 dingo (Sandy 2020 James Cook U) Canis lupus dingo GCF_003254725.2_ASM325472v2 159 2,349,862,946 69 33,679 33.42
147 dog (boxer Tasha 2011) Canis lupus familiaris GCF_000002285.3_CanFam3.1 3,268 2,410,976,875 23,876 18,261,639 43.02
148 dog (boxer Tasha 2020) Canis lupus familiaris GCF_000002285.5_Dog10K_Boxer_Tasha 147 2,312,802,198 1,028 58,852 42.49
149 dog (German shepard Mischka 2020) Canis lupus familiaris GCF_011100685.1_UU_Cfam_GSD_1.0 2,197 2,481,983,352 585 58,500 43.95
150 dog (labrador SID07034 2020) Canis lupus familiaris GCF_014441545.1_ROS_Cfam_1.0 376 2,396,858,295 575 12,662,630 42.12
151 domestic cat (Abyssinian Cinnamon 2021 WashU) Felis catus GCA_000181335.5_felCat9.1_X 4,507 2,521,710,482 422 45,197,951 33.35
152 domestic cat (Abyssinian Cinnamon 2017 WashU) Felis catus GCF_000181335.3_Felis_catus_9.0 4,508 2,521,863,845 436 45,410,675 42.79
153 domestic cat (Fca126 2021 Texas A&M U) Felis catus GCF_018350175.1_F.catus_Fca126_mat1.0 71 2,425,747,038 39 7,100 43.70
154 domestic ferret (JIRA1106 JCVI 2020) Mustela putorius furo GCF_011764305.1_ASM1176430v1.1 1,224 2,577,107,489 0 0 39.54
155 domestic ferret (Sable 2011 Broad) Mustela putorius furo GCA_000239315.1_MusPutFurMale1.0 4,244 2,400,178,934 72,670 74,980,417 38.91
156 domestic guinea pig (2N 2008 refseq) Cavia porcellus GCF_000151735.1_Cavpor3.0 3,144 2,723,219,641 58,460 59,849,908 38.03
157 dugong (hap1 mDugDug1 2023) Dugong dugon GCA_030035585.1_mDugDug1.hap1 198 3,158,488,110 96 19,200 47.43
158 dugong (hap2 mDugDug1 2023) Dugong dugon GCA_030020955.1_mDugDug1.hap2 167 3,154,453,075 89 17,631 47.38
159 dwarf mongoose Helogale parvula GCA_004023845.1_HelPar_v1_BIUU 189,370 2,392,471,390 10,815 1,081,500 40.35
160 eastern cottontail (primary hap 2023) Sylvilagus floridanus GCA_949820135.1_mSylFlo1.10 99 2,848,420,111 316 31,600 44.09
161 eastern mole Scalopus aquaticus GCA_004024925.1_ScaAqu_v1_BIUU 640,296 2,068,871,057 7,239 723,900 32.90
162 eastern quoll Dasyurus viverrinus GCA_020854095.1_UniMelb_DasViv_v1.0 76 3,139,221,772 431 42,715 41.75
163 Egyptian rousette (1219 2016 Boston U) Rousettus aegyptiacus GCF_001466805.2_Raegyp2.0 2,490 1,910,250,568 638 482,376 32.27
164 Egyptian rousette (v1 2020 refseq) Rousettus aegyptiacus GCF_014176215.1_mRouAeg1.p 29 1,893,602,072 242 26,674,495 32.62
165 Egyptian spiny mouse Acomys cahirinus GCA_004027535.1_AcoCah_v1_BIUU 371,342 2,306,070,819 20,469 2,046,900 35.21
166 elk (wapiti) Cervus canadensis GCF_019320065.1_ASM1932006v1 185 2,526,613,007 6,643 1,906,222 43.17
167 ermine (alternate hap 2020) Mustela erminea GCA_009829165.1_mMusErm1.alt 3,327 1,640,216,494 0 0 40.61
168 ermine (2020) Mustela erminea GCF_009829155.1_mMusErm1.Pri 94 2,445,217,270 199 21,483,976 41.13
169 Eurasian badger (v3.2 2022) Meles meles GCA_922984935.2_mMelMel3.2_paternal_haplotype 538 2,738,694,574 101 23,800 38.09
170 Eurasian badger (2021) Meles meles GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated 726 2,692,729,365 27 13,500 37.74
171 Eurasian field mouse (2024) Apodemus agrarius GCA_964023405.1_mApoAgr2.1 61 2,613,539,280 182 36,400 39.29
172 Eurasian red squirrel (alternate hap 2019) Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype 10,655 1,366,022,868 2 71 35.43
173 Eurasian red squirrel (v1.2 2020) Sciurus vulgaris GCA_902686455.2_mSciVul1.2 639 2,878,607,543 1,177 163,358,994 33.75
174 Eurasian river otter (2020) Lutra lutra GCF_902655055.1_mLutLut1.2 44 2,438,458,878 185 90,271 34.39
175 Eurasian river otter (alternate hap 2019) Lutra lutra GCA_902653095.1_mLutLut1.1_alternate_haplotype 8,506 1,081,484,062 0 0 42.29
176 Eurasian water vole (v2 2021) Arvicola amphibius GCF_903992535.2_mArvAmp1.2 215 2,297,766,297 873 6,026,960 32.43
177 Eurasian water vole (alternate hap 2020) Arvicola amphibius GCA_903992525.1_mArvAmp1.1_alternate_haplotype 16,368 1,764,008,884 105 7,311 31.38
178 European harvest mouse (primary hap 2024) Micromys minutus GCA_963924665.1_mMicMin1.1 894 2,651,787,409 2,020 404,000 42.52
179 European mink (alternate hap 2023) Mustela lutreola GCA_030435785.1_mMusLut2.alt 12,043 1,786,977,177 0 0 34.22
180 European mink (primary hap 2023 refseq) Mustela lutreola GCF_030435805.1_mMusLut2.pri 25 2,586,268,927 39 7,800 36.60
181 European pine marten (primary hap 2023) Martes martes GCA_963455335.1_mMarMar1.1 477 2,484,650,161 2,250 450,000 34.75
182 European shrew (GB8-d 2012) Sorex araneus GCF_000181275.1_SorAra2.0 12,845 2,423,158,183 188,953 231,054,757 35.32
183 European shrew (alternate hap 2023) Sorex araneus GCA_027595995.1_mSorAra2.alt 5,699 2,319,662,114 0 0 41.95
184 European shrew (primary hap 2023) Sorex araneus GCF_027595985.1_mSorAra2.pri 65 2,405,993,548 1,427 12,943,964 41.75
185 European snow vole (alternate hap 2023) Chionomys nivalis GCA_950005115.1_mChiNiv1.1_alternate_haplotype 4,255 2,022,897,225 1 33 33.35
186 European snow vole (primary hap 2023 refseq) Chionomys nivalis GCF_950005125.1_mChiNiv1.1 160 2,393,390,621 197 39,400 44.15
187 European woodmouse (2022 refseq) Apodemus sylvaticus GCF_947179515.1_mApoSyl1.1 497 2,889,785,202 1,129 225,617 40.60
188 European woodmouse (alternate hap 2022) Apodemus sylvaticus GCA_947179525.1_mApoSyl1.1_alternate_haplotype 10,861 2,392,986,241 2 34 39.68
189 fat dormouse (US078 2019) Glis glis GCA_004027185.1_GliGli_v1_BIUU 433,430 2,462,087,207 10,685 1,068,500 39.98
190 fat sand rat (mPsaObe1 2021) Psammomys obesus GCF_907164565.1_mPsaObe1.curated_primary_1811 11,389 2,364,758,811 50,482 21,311,757 42.74
191 fat sand rat (Psa_ob012049795 2017) Psammomys obesus GCA_002215935.1_ASM221593v1 96,427 2,311,471,749 0 0 38.92
192 fishing cat (Anna 2022 U Missouri) Prionailurus viverrinus GCF_022837055.1_UM_Priviv_1.0 192 2,461,562,329 63 31,077 34.90
193 Florida manatee (CSIC 2023) Trichechus manatus latirostris GCA_030013775.1_ASM3001377v1 15,608 3,088,727,998 33 2,662 46.99
194 Florida manatee (Lorelei 2012 refseq) Trichechus manatus latirostris GCF_000243295.1_TriManLat1.0 6,323 3,103,808,406 160,167 334,708,729 38.47
195 fossa Cryptoprocta ferox GCA_004023885.1_CryFer_v1_BIUU 464,036 2,458,846,334 6,335 633,500 42.39
196 Gambian giant pouched rat Cricetomys gambianus GCA_004027575.1_CriGam_v1_BIUU 1,102,952 2,397,721,602 7,473 747,300 32.80
197 gayal (CVASU_BF_001 2021) Bos frontalis GCA_017311355.1_CVASU_Gayal_001 1,262,134 2,795,315,450 0 0 42.37
198 gayal (Nagaland 2019) Bos frontalis GCA_007844835.1_NRC_Mithun_1 5,015 3,002,445,034 301,761 105,704,412 44.11
199 Geoffroy's cat Leopardus geoffroyi GCF_018350155.1_O.geoffroyi_Oge1_pat1.0 47 2,426,387,554 45 8,500 43.28
200 giant anteater Myrmecophaga tridactyla GCA_004026745.1_MyrTri_v1_BIUU 1,621,408 3,547,273,050 8,283 828,300 39.98
201 giant otter Pteronura brasiliensis GCA_004024605.1_PteBra_v1_BIUU 644,728 2,602,275,310 7,431 743,100 41.58
202 giant panda (Jingjing v3 2020) Ailuropoda melanoleuca GCF_002007445.2_ASM200744v3 73,514 2,440,277,323 189,277 46,834,366 33.77
203 goat (v2 San Clemente 2016 USDA) Capra hircus GCF_001704415.2_ARS1.2 29,886 2,922,617,086 790 39,279 44.86
204 Gobi jerboa Orientallactaga bullata GCA_004027895.1_AllBul_v1_BIUU 1,284,382 3,093,575,781 10,987 1,098,700 47.74
205 golden hamster (Baylor 2021) Mesocricetus auratus GCF_017639785.1_BCM_Maur_2.0 6,347 2,457,078,271 711 73,849,388 32.88
206 golden hamster (Broad 2013 refseq) Mesocricetus auratus GCF_000349665.1_MesAur1.0 21,484 2,504,925,039 216,216 428,748,785 24.30
207 golden spiny mouse (2020) Acomys russatus GCF_903995435.1_mAcoRus1.1 623 2,301,522,284 880 7,954,169 32.57
208 gracile shrew mole Uropsilus gracilis GCA_004024945.1_UroGra_v1_BIUU 723,835 2,112,710,047 8,248 824,800 31.41
209 gray seal Halichoerus grypus GCF_012393455.1_Tufts_HGry_1.1 6,880 2,338,243,510 117 11,700 43.32
210 gray short-tailed opossum (MonDom5 2007) Monodelphis domestica GCF_000002295.2_MonDom5 5,016 3,598,443,077 67,660 98,827,259 54.36
211 gray short-tailed opossum (mMonDom1 alternate hap 2023) Monodelphis domestica GCA_027917375.1_mMonDom1.alt 8,062 2,616,995,731 24 91,053 43.40
212 gray short-tailed opossum (mMonDom1 primary hap 2023 refseq) Monodelphis domestica GCF_027887165.1_mMonDom1.pri 13 3,586,166,573 2,255 31,907,317 43.38
213 gray squirrel (2020) Sciurus carolinensis GCF_902686445.1_mSciCar1.2 752 2,815,397,268 1,824 604,531 34.56
214 gray squirrel (alternate hap 2019) Sciurus carolinensis GCA_902685475.1_mSciCar1.1_alternate_haplotype 9,508 2,057,949,030 2 530 35.01
215 gray wolf (2021) Canis lupus GCA_905319855.2_mCanLor1.2 82 2,447,463,909 166 45,800 34.76
216 gray wolf (alternate hap 2021) Canis lupus GCA_905319845.1_mCanLor1.1_alternate_haplotype 5,536 1,446,594,657 1 500 32.70
217 great roundleaf bat (v2 ML-2016 2016) Hipposideros armiger GCF_001890085.2_ASM189008v1 7,387 2,236,326,314 172,750 281,788,247 26.87
218 greater bulldog bat Noctilio leporinus GCA_004026585.1_NocLep_v1_BIUU 298,222 2,098,501,394 6,171 617,100 35.30
219 Greater cane rat Thryonomys swinderianus GCA_004025085.1_ThrSwi_v1_BIUU 1,889,641 2,662,148,533 8,825 882,500 41.84
220 greater horseshoe bat (MPI-CBG alternate hap 2019) Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h 13,424 1,514,615,512 2 1,000 34.47
221 greater horseshoe bat (v2 MPI-CBG 2019) Rhinolophus ferrumequinum GCF_004115265.2_mRhiFer1_v1.p 134 2,075,768,562 158 7,546,098 34.43
222 greater mouse-eared bat (2020 Bat1K) Myotis myotis GCF_014108235.1_mMyoMyo1.p 93 2,002,797,769 538 28,953,405 35.85
223 greater spear-nosed bat (2021 Texas Tech U) Phyllostomus hastatus GCF_019186645.2_TTU_PhHast_1.1 534 2,089,223,459 55 5,466 30.93
224 grey whale Eschrichtius robustus GCA_004363415.1_EscRob_v1_BIUU 1,036,148 2,617,572,198 10,622 1,062,200 45.58
225 grey whale (mEscRob2 alternate hap 2023) Eschrichtius robustus GCA_028021475.1_mEscRob2.alt 14,442 2,787,390,652 0 0 45.70
226 grey whale (mEscRob2 primary hap 2023) Eschrichtius robustus GCA_028021215.1_mEscRob2.pri 704 2,982,434,994 279 55,800 46.40
227 hairy big-eared bat (US037 2019 Broad) Micronycteris hirsuta GCA_004026765.1_MicHir_v1_BIUU 550,090 2,314,654,405 3,218 321,800 34.43
228 harbor porpoise (primary hap 2024) Phocoena phocoena GCA_963924675.1_mPhoPho1.1 440 2,512,729,496 966 193,200 39.05
229 harbor seal Phoca vitulina GCF_004348235.1_GSC_HSeal_1.0 5,130 2,362,163,281 16,480 21,441,505 42.93
230 Hawaiian monk seal (2021 Johns Hopkins U) Neomonachus schauinslandi GCF_002201575.2_ASM220157v2 7,487 2,417,544,661 25,763 42,900,233 42.85
231 hazel dormouse Muscardinus avellanarius GCA_004027005.1_MusAve_v1_BIUU 466,805 2,527,147,110 15,076 1,507,600 44.00
232 hazel dormouse (alternate hap 2023) Muscardinus avellanarius GCA_963383665.1_mMusAve1.1_alternate_haplotype 31,856 1,187,222,402 0 0 41.89
233 hazel dormouse (primary hap 2023) Muscardinus avellanarius GCA_963383645.1_mMusAve1.1 213 2,497,520,702 1,805 361,000 43.99
234 hippopotamus (BS01 2019 Broad) Hippopotamus amphibius GCA_004027065.1_HipAmp_v1_BIUU 967,869 2,677,915,672 4,730 473,000 41.29
235 hippopotamus (HIP001 2018) Hippopotamus amphibius GCA_002995585.1_ASM299558v1 128,772 2,425,746,322 153,125 130,442,674 36.50
236 hippopotamus (mHipAmp2 hap1 2023) Hippopotamus amphibius kiboko GCA_030028035.1_mHipAmp2.hap1 545 2,533,318,371 83 16,600 35.57
237 hippopotamus (v2 hap2 2023 refseq) Hippopotamus amphibius kiboko GCF_030028045.1_mHipAmp2.hap2 357 2,538,259,262 226 45,200 35.48
238 hirola (BS46 2019 Broad) Beatragus hunteri GCA_004027495.1_BeaHun_v1_BIUU 535,889 2,697,255,800 9,287 928,700 48.62
239 Hispaniolan solenodon Solenodon paradoxus GCA_004363575.1_SolPar_v1_BIUU 176,618 2,109,877,870 5,186 518,600 27.36
240 hispid cotton rat Sigmodon hispidus GCA_004025045.1_SigHis_v1_BIUU 883,546 2,730,600,022 13,744 1,374,400 38.08
241 Hoffmann's two-fingered sloth Choloepus hoffmanni GCA_000164785.2_C_hoffmanni-2.0.1 269,078 3,285,969,814 101,085 62,661,069 51.23
242 hog-nosed bat Craseonycteris thonglongyai GCA_004027555.1_CraTho_v1_BIUU 1,224,256 2,272,093,077 6,224 622,400 39.99
243 Honduran yellow-shouldered bat (v2.1 Veracruz 20B 2020) Sturnira hondurensis GCF_014824575.3_WHU_Shon_v2.1 25,848 2,096,403,328 38,648 4,340,668 31.29
244 horse (Twilight 2018) Equus caballus GCF_002863925.1_EquCab3.0 4,701 2,506,966,135 6,294 9,435,481 44.70
245 horse (maternal 2024) Equus caballus GCA_036418255.1_mEquCab1.mat 821 2,331,848,197 210 42,000 34.70
246 horse (paternal 2024) Equus caballus GCA_036426135.1_mEquCab1.pat 602 2,596,737,506 114 22,800 35.42
247 house mouse (primary hap 2023) Mus musculus GCA_949316315.1_mMusMuc1.1 179 2,770,968,735 101 20,200 45.38
248 house mouse (alternate hap 2023) Mus musculus GCA_949316305.1_mMusMuc1.1_alternate_haplotype 1,806 114,758,919 0 0 72.25
249 house mouse (129S1_SvImJv1 2016) Mus musculus GCA_001624185.1_129S1_SvImJ_v1 7,154 2,732,673,693 366,945 411,134,550 34.37
250 house mouse (129S1_SvImJ_v3 2022) Mus musculus GCA_921998555.2_129S1_SvImJ_v3 180 2,516,264,171 1,557 10,020,189 40.65
251 house mouse (AKR_J v3 2022) Mus musculus GCA_922000895.2_AKR_J_v3 195 2,502,437,360 2,714 3,777,539 40.71
252 house mouse (A_J v3 2022) Mus musculus GCA_921998355.2_A_J_v3 158 2,528,261,066 608 15,412,147 40.62
253 house mouse (BALB_cJ v3 2022) Mus musculus GCA_921997145.2_BALB_cJ_v3 210 2,519,913,072 274 4,941,394 40.78
254 house mouse (C3H_HeJ v3 2022) Mus musculus GCA_921997125.2_C3H_HeJ_v3 171 2,532,437,445 844 24,071,608 40.45
255 house mouse C57BL/6J 2020 GRC Mus musculus GCF_000001635.27_GRCm39 61 2,728,222,451 334 73,600,668 44.37
256 house mouse C57BL_6NJ Mus musculus GCA_001632555.1_C57BL_6NJ_v1 3,894 2,806,800,287 410,660 492,018,984 33.23
257 house mouse CAST_EiJ Mus musculus castaneus GCA_001624445.1_CAST_EiJ_v1 2,977 2,653,990,650 424,005 367,109,054 34.43
258 house mouse (CBA_J v3 2022) Mus musculus GCA_921998905.2_CBA_J_v3 143 2,520,503,295 658 12,014,811 40.65
259 house mouse (DBA_2J v3 2022) Mus musculus GCA_921998315.2_DBA_2J_v3 352 2,603,173,077 153 93,627 41.77
260 house mouse (FVB_NJ v3 2022) Mus musculus GCA_921998635.2_FVB_NJ_v3 376 2,516,166,699 6,244 41,610,471 39.82
261 house mouse (LP_J v3 2022) Mus musculus GCA_947599735.1_LP_J_v3 428 2,856,326,412 386 347,757 46.40
262 house mouse (NOD_ShiLtJ v3 2022) Mus musculus GCA_921998325.2_NOD_ShiLtJ_v3 168 2,517,363,844 1,462 12,565,368 40.61
263 house mouse (NZO_HlLtJ v3 2022) Mus musculus GCA_947593165.1_NZO_HlLtJ_v3 383 2,822,921,548 234 44,812 45.99
264 eastern European house mouse (PWK_PhJ v2 2022) Mus musculus musculus GCA_921998335.2_PWK_PhJ_v3 208 2,507,124,360 207 2,813,974 40.60
265 hybrid cattle (Angus x Brahman F1 Angus haplotype 2018) Bos indicus x Bos taurus GCA_003369685.2_UOA_Angus_1 1,435 2,580,764,822 277 6,480,811 47.42
266 hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018) Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 1,250 2,680,953,056 302 1,636,497 47.57
267 Iberian mole (v2.1 TD23 2020) Talpa occidentalis GCF_014898055.3_MPIMG_talOcc4v2.1 3,202 2,080,989,295 3,575 2,281,188 32.63
268 Indian false vampire Megaderma lyra GCA_004026885.1_MegLyr_v1_BIUU 1,902,801 2,620,948,449 6,266 626,600 39.97
269 Indian flying fox Pteropus giganteus GCF_902729225.1_Ma_sr-lr_union100 16,113 1,985,219,947 17,500 17,910,495 33.84
270 Indochinese shrew (US011 2019 Broad) Crocidura indochinensis GCA_004027635.1_CroInd_v1_BIUU 2,415,412 3,082,217,326 5,267 526,700 46.21
271 Indus River dolphin Platanista minor GCA_004363435.1_PlaMin_v1_BIUU 1,098,790 2,671,072,510 11,702 1,170,200 45.60
272 intermediate roundleaf bat (primary hap 2023) Hipposideros larvatus GCA_031876335.1_mHipLar1.pri 69 2,338,923,724 119 33,404 35.41
273 jaguar (BS21 2019) Panthera onca GCA_004023805.1_PanOnc_v1_BIUU 438,792 2,504,534,411 21,329 2,132,900 43.76
274 jaguar (Sample0147 2023) Panthera onca GCF_028533385.1_Panthera_onca_HiC 36,243 2,380,259,976 56,371 16,621,100 33.19
275 jaguarundi Puma yagouaroundi GCF_014898765.1_PumYag 10,948 2,473,139,798 42,499 53,379,134 42.39
276 Jamaican fruit-eating bat (1a 2020 Wuhan U) Artibeus jamaicensis GCF_014825515.1_WHU_Ajam_v2 56,740 2,207,618,356 110,840 24,988,949 30.66
277 Jamaican fruit-eating bat (2021) Artibeus jamaicensis GCF_021234435.1_CSHL_Jam_final 868 2,108,405,990 3 69 31.62
278 Japanese wild mouse (2022) Mus musculus molossinus GCA_921999095.2_JF1_MsJ_v3 1,398 2,727,434,176 397 115,853 42.60
279 Java mouse-deer (US108 2019 Broad) Tragulus javanicus GCA_004024965.1_TraJav_v1_BIUU 1,156,990 2,582,625,763 2,829 282,900 39.90
280 killer whale (Morgan 2013) Orcinus orca GCF_000331955.2_Oorc_1.1 1,668 2,372,919,875 78,441 123,337,763 41.73
281 killer whale (2022) Orcinus orca GCF_937001465.1_mOrcOrc1.1 448 2,647,351,467 123 24,436 41.64
282 killer whale (alternate hap 2022) Orcinus orca GCA_937001455.1_mOrcOrc1.1_alternate_haplotype 12,410 1,882,900,201 0 0 41.12
283 koala (Bilbo 61053 2022) Phascolarctos cinereus GCA_003287225.2_phaCin_HiC 1,246 3,192,631,935 669 66,801 39.25
284 Kuhl's pipistrelle (2020) Pipistrellus kuhlii GCF_014108245.1_mPipKuh1.p 202 1,775,688,541 394 12,201,491 34.57
285 large flying fox Pteropus vampyrus GCF_000151845.1_Pvam_2.0 36,094 2,198,284,804 189,340 181,040,307 33.53
286 large Japanese field mouse (IB14-021 2017) Apodemus speciosus GCA_002335545.1_Aspe_assembly01 336,123 3,494,278,632 4,289,924 1,479,927,621 18.34
287 large tree shrew (BS70 2022) Tupaia tana GCA_026018925.1_mTupTan1 1,198 2,948,294,157 1,188 115,755 46.11
288 leopard (Maewha 2016 refseq) Panthera pardus GCF_001857705.1_PanPar1.0 50,377 2,578,019,207 214,953 99,153,465 41.28
289 leopard (Hobbes primary hap 2022) Panthera pardus GCF_024362965.1_ASM2436296v1 382 2,441,343,278 335 163,262 34.04
290 leopard cat Prionailurus bengalensis GCF_016509475.1_Fcat_Pben_1.1_paternal_pri 84 2,435,718,761 56 12,400 43.33
291 lesser Egyptian jerboa (JJ0015 2012 refseq) Jaculus jaculus GCF_000280705.1_JacJac1.0 10,896 2,835,242,767 326,464 364,982,898 33.98
292 lesser Egyptian jerboa (alternate hap 2021) Jaculus jaculus GCA_020740715.1_mJacJac1.pat.decon 508 2,595,216,862 2,875 188,089,954 40.53
293 lesser Egyptian jerboa (2021) Jaculus jaculus GCF_020740685.1_mJacJac1.mat.Y.cur 160 2,863,865,261 561 13,702,780 44.14
294 lesser panda Ailurus styani GCA_002007465.1_ASM200746v1 11,589 2,342,939,051 137,333 34,037,754 40.32
295 lion Panthera leo GCF_018350215.1_P.leo_Ple1_pat1.1 54 2,297,568,983 55 9,500 42.28
296 little brown bat Myotis lucifugus GCF_000147115.1_Myoluc2.0 11,654 2,034,575,300 61,131 68,155,432 35.84
297 little pocket mouse (longimembris alternate hap 2022) Perognathus longimembris GCA_024363435.1_mPerLon1.0.a 718 2,257,225,505 229 22,900 43.22
298 little pocket mouse (longimembris primary hap 2022) Perognathus longimembris GCA_024363575.1_mPerLon1.0.p 1,135 2,346,747,858 215 21,500 43.76
299 little tube-nosed bat Murina aurata feae GCA_004026665.1_MurFea_v1_BIUU 880,177 2,331,551,382 6,795 679,500 41.20
300 long-finned pilot whale (primary hap 2023) Globicephala melas GCF_963455315.1_mGloMel1.1 993 2,651,292,441 1,084 216,617 42.02
301 long-finned pilot whale (X-22926-18 2019) Globicephala melas GCF_006547405.1_ASM654740v1 6,416 2,333,163,658 14,859 9,903,588 45.42
302 long-tailed chinchilla Chinchilla lanigera GCF_000276665.1_ChiLan1.0 2,839 2,390,868,971 78,817 106,575,991 29.61
303 long-tongued fruit bat (US102 2019 Broad) Macroglossus sobrinus GCA_004027375.1_MacSob_v1_BIUU 171,985 1,897,644,983 2,056 205,600 32.67
304 Lowland paca Cuniculus paca GCA_004365215.1_CunPac_v1_BIUU 3,768,450 3,399,583,187 3,060 306,000 38.62
305 Malayan pangolin (MP_PG03-UM 2016 refseq) Manis javanica GCF_001685135.1_ManJav1.0 80,670 2,547,395,906 984,658 198,861,919 32.48
306 Malayan pangolin YNU ManJav 2.0 Manis javanica GCF_014570535.1_YNU_ManJav_2.0 17,969 2,438,977,774 57,746 200,728,160 31.43
307 Merriam's kangaroo rat (MVZ:Mamm:240054 alternate hap 2022) Dipodomys merriami GCA_024711525.1_mDipMer1.0.a 3,482 2,921,273,682 181 18,100 53.95
308 Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022) Dipodomys merriami GCA_024711535.1_mDipMer1.0.p 4,354 3,365,254,602 182 18,200 52.00
309 Masai giraffe (MA1 2016 Penn St) Giraffa tippelskirchi GCA_001651235.1_ASM165123v1 513,166 2,705,052,085 257,672 94,132,413 42.43
310 meadow jumping mouse Zapus hudsonius GCA_004024765.1_ZapHud_v1_BIUU 1,158,100 2,611,189,839 7,610 761,000 39.92
311 meerkat (VVHF042 2019 DNA Zoo refseq) Suricata suricatta GCF_006229205.1_meerkat_22Aug2017_6uvM2_HiC 63,791 2,353,578,744 65,245 6,638,100 40.04
312 minke whale (2013 refseq) Balaenoptera acutorostrata scammoni GCF_000493695.1_BalAcu1.0 10,776 2,431,687,698 173,296 145,030,652 30.97
313 minke whale (alternate hap 2023) Balaenoptera acutorostrata GCA_950005055.1_mBalAcu1.1_alternate_haplotype 21,271 2,590,401,380 1 27 41.31
314 minke whale (primary hap 2023 refseq) Balaenoptera acutorostrata GCF_949987535.1_mBalAcu1.1 1,374 2,772,885,358 1,177 235,400 42.67
315 Mongolian gerbil (243 2017 Lucigen Corp.) Meriones unguiculatus GCF_002204375.1_MunDraft-v1.0 68,793 2,523,124,066 91,601 120,571,873 35.98
316 Mongolian gerbil (EAM2014 2019 BGI) Meriones unguiculatus GCA_008131255.1_ASM813125v1 309,090 2,537,531,842 103,843 24,688,023 34.65
317 Mongolian gerbil (TT.TT164.6M 2023) Meriones unguiculatus GCF_030254825.1_Bangor_MerUng_6.1 193 2,702,201,048 53 5,301 39.22
318 monito del monte (mDroGli1 alternate hap 2021) Dromiciops gliroides GCA_019395325.1_mDroGli1.alt 9,926 2,818,512,018 33 1,259 42.26
319 monito del monte (mDroGli1 primary hap 2021 refseq) Dromiciops gliroides GCF_019393635.1_mDroGli1.pri 17 3,303,199,800 260 2,929,889 42.81
320 Montane guinea pig Cavia tschudii GCA_004027695.1_CavTsc_v1_BIUU 1,368,179 3,077,352,510 11,321 1,132,100 40.42
321 mountain beaver Aplodontia rufa GCA_004027875.1_AplRuf_v1_BIUU 1,279,526 3,005,535,537 7,253 725,300 38.23
322 muskrat Ondatra zibethicus GCA_004026605.1_OndZib_v1_BIUU 565,356 2,562,752,769 6,243 624,300 35.24
323 naked mole-rat (NMR 29 2012 refseq) Heterocephalus glaber GCF_000247695.1_HetGla_female_1.0 4,229 2,618,204,639 110,424 303,433,536 28.93
324 naked mole-rat (MEF-2018 2020) Heterocephalus glaber GCA_014060925.1_Heter_glaber.v1.7_hic_pac 9,262 3,041,864,219 139,535 149,339,004 34.22
325 narwhal (Baffin Bay 2019) Monodon monoceros GCF_005190385.1_NGI_Narwhal_1 6,972 2,355,574,979 18,323 11,468,950 43.79
326 Natal long-fingered bat Miniopterus natalensis GCF_001595765.1_Mnat.v1 1,269 1,803,099,001 204,616 68,267,343 27.90
327 neotropical fruit bat Sturnira hondurensis GCF_014824575.2_WHU_Shon_v2.1 26,068 2,096,623,354 38,675 4,342,691 31.29
328 Nilgiri tahr Hemitragus hylocrius GCA_004026825.1_HemHyl_v1_BIUU 469,163 2,715,042,536 10,387 1,038,700 48.51
329 nine-banded armadillo (v3.2 3-136 2012 Baylor) Dasypus novemcinctus GCF_000208655.3_Dasnov3.2 46,380 3,631,323,489 268,437 331,628,649 38.29
330 nine-banded armadillo (mDasNov1 hap1 2023) Dasypus novemcinctus GCA_030445055.1_mDasNov1.hap1 594 3,335,791,168 845 24,283,244 42.43
331 nine-banded armadillo (mDasNov1 hap2 2023) Dasypus novemcinctus GCF_030445035.1_mDasNov1.hap2 539 3,570,966,115 771 11,475,092 43.66
332 North American deer mouse (MVZ:Mamm:240117 alternate hap 2022) Peromyscus maniculatus sonoriensis GCA_026167925.1_mPerMan1.0.a 1,006 2,625,495,359 229 22,900 37.61
333 North American deer mouse (MVZ:Mamm:240117 primary hap 2022) Peromyscus maniculatus sonoriensis GCA_026229955.1_mPerMan1.0.p 1,838 2,847,741,276 244 24,400 48.05
334 North American porcupine (mEreDor1 alternate hap 2023) Erethizon dorsatum GCA_028500835.1_mEreDor1.alt 5,050 1,937,137,571 1 37 40.58
335 North American porcupine (mEreDor1 primary hap 2023) Erethizon dorsatum GCA_028451465.1_mEreDor1.pri 116 2,432,147,792 277 68,864 41.67
336 North Atlantic right whale (hap1 2023) Eubalaena glacialis GCA_028571275.1_mEubGla1.hap1 947 2,615,329,254 385 4,162,427 43.42
337 North Atlantic right whale (hap2 + XY 2023 refseq) Eubalaena glacialis GCF_028564815.1_mEubGla1.1.hap2._XY 789 2,843,691,573 367 4,958,084 43.93
338 North Pacific right whale Eubalaena japonica GCA_004363455.1_EubJap_v1_BIUU 1,353,963 2,693,575,300 7,094 709,400 45.71
339 northern American river otter Lontra canadensis GCF_010015895.1_GSC_riverotter_1.0 6,613 2,404,424,673 7,620 10,169,781 41.05
340 northern bat (alternate hap 2023) Eptesicus nilssonii GCA_951640545.1_mEptNil1.1_alternate_haplotype 4,896 1,900,360,802 3 600 36.13
341 northern bat (primary hap 2023) Eptesicus nilssonii GCA_951640355.1_mEptNil1.1 207 2,064,119,045 1,423 284,600 38.22
342 northern black mastiff bat (mMolNig1 2022) Molossus nigricans GCA_026936385.1_BBF_mMolNig1_v1 146 2,407,891,554 199 99,500 39.26
343 northern bottlenose whale (alternate hap 2023) Hyperoodon ampullatus GCA_949752845.1_mHypAmp2.1_alternate_haplotype 23,401 2,477,781,444 0 0 41.73
344 northern bottlenose whale (primary hap 2023) Hyperoodon ampullatus GCA_949752795.1_mHypAmp2.1 757 2,828,760,712 1,098 219,600 44.84
345 northern elephant seal (CCGP_5_RB_7025 alternate hap 2023) Mirounga angustirostris GCA_029215635.1_mMirAng1.0.hap2 422 2,451,151,009 60 6,000 35.48
346 northern elephant seal (CCGP_5_RB_7025 primary hap 2023) Mirounga angustirostris GCA_029215605.1_mMirAng1.0.hap1 498 2,430,321,998 98 9,800 35.33
347 northern elephant seal (v3 JK_09032017 2022) Mirounga angustirostris GCF_021288785.2_ASM2128878v3 142,455 2,366,166,981 39,936 15,295,600 33.76
348 northern elephant seal (BS05 2019 Broad) Mirounga angustirostris GCA_004023865.1_MirAng_v1_BIUU 321,256 2,407,319,723 9,483 948,300 43.85
349 northern fur seal Callorhinus ursinus GCF_003265705.1_ASM326570v1 13,803 2,705,476,987 38,666 53,834,781 42.55
350 northern gundi Ctenodactylus gundi GCA_004027205.1_CteGun_v1_BIUU 860,073 2,322,471,743 5,037 503,700 33.74
351 northern mole vole Ellobius talpinus GCA_001685095.1_ETalpinus_0.1 350,460 2,265,966,243 371,627 22,296,864 29.05
352 northern white rhinoceros Ceratotherium simum cottoni GCA_004027795.1_CerCot_v1_BIUU 942,426 2,666,617,437 7,054 705,400 38.91
353 Norway rat (BN/NHsdMcwi 2024 genbank) Rattus norvegicus GCA_036323735.1_GRCr8 77 2,849,597,507 220 4,130,577 40.06
354 Norway rat (BN/NHsdMcwi 2024 refseq) Rattus norvegicus GCF_036323735.1_GRCr8 76 2,849,581,192 220 4,130,577 42.82
355 Norway rat BN7 haplotype Rattus norvegicus GCA_015244455.1_mRatBN7.1_alternate_haplotype 3,156 286,931,382 6 327 50.93
356 Norway rat BN7.2 Rattus norvegicus GCF_015227675.2_mRatBN7.2 176 2,647,915,728 581 21,334,956 45.26
357 Norway rat celera Rattus norvegicus GCF_000002265.2_Rn_Celera 7,032 2,616,369,673 111,391 123,963,010 41.64
358 Norway rat Rnor6.0 Rattus norvegicus GCF_000001895.5_Rnor_6.0 953 2,870,182,909 145,731 140,322,104 42.11
359 Norway rat SHR/Utx RGD_8142385 2022 Rattus norvegicus GCA_023515785.1_UTH_Rnor_SHR_Utx 2,151 2,866,391,611 1,256 5,112,594 38.36
360 Norway rat SHRSP/BppUtx 2022 Rattus norvegicus GCA_021556685.1_UTH_Rnor_SHRSP_BbbUtx_1.0 2,734 2,907,517,304 1,610 1,603,696 46.50
361 Norway rat WKY/Bbb 2022 Rattus norvegicus GCA_023515805.1_UTH_Rnor_WKY_Bbb_1.0 3,553 2,910,747,220 1,456 5,804,136 38.26
362 nutria Myocastor coypus GCA_004027025.1_MyoCoy_v1_BIUU 1,669,667 2,903,175,784 15,249 1,524,900 42.58
363 okapi Okapia johnstoni GCA_001660835.1_ASM166083v1 837,169 2,878,121,957 376,008 139,805,686 40.84
364 Ord's kangaroo rat Dipodomys ordii GCF_000151885.1_Dord_2.0 65,193 2,236,368,823 83,035 171,054,779 36.61
365 pacarana Dinomys branickii GCA_004027595.1_DinBra_v1_BIUU 1,158,438 2,688,563,719 6,392 639,200 36.00
366 Pacific pocket mouse (BS65 2019 Broad) Perognathus longimembris pacificus GCA_004363475.1_PerLonPac_v1_BIUU 2,409,818 2,601,695,796 18,801 1,880,100 48.44
367 Pacific pocket mouse (PPM17 2022 San Diego Zoo) Perognathus longimembris pacificus GCF_023159225.1_ASM2315922v1 6,180 2,212,099,196 1,807 797,500 42.64
368 Pacific walrus Odobenus rosmarus divergens GCF_000321225.1_Oros_1.0 3,893 2,400,150,193 66,766 99,898,119 30.44
369 Pacific white-sided dolphin Lagenorhynchus obliquidens GCF_003676395.1_ASM367639v1 5,013 2,332,936,118 16,699 10,292,894 45.47
370 pale spear-nosed bat (alternate hap MPI-MPIP 2019) Phyllostomus discolor GCA_004115245.1_mPhyDis1_v1.h 10,835 2,050,602,545 38 18,868 29.66
371 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020) Phyllostomus discolor GCA_004115245.2_mPhyDis1.alti.v3 10,857 2,051,656,167 38 18,868 29.67
372 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020) Phyllostomus discolor GCF_004126475.2_mPhyDis1.pri.v3 77 2,108,832,841 884 15,088,856 30.59
373 Pallas's mastiff bat Molossus molossus GCF_014108415.1_mMolMol1.p 60 2,315,568,481 349 47,372,874 37.10
374 pallid bat (TK200870 primary hap 2023) Antrozous pallidus GCA_027563665.1_DD_ASM_mAP_20210503 93 2,126,460,045 234 5,884,678 39.43
375 Parnell's mustached bat (2013) Pteronotus parnellii GCA_000465405.1_ASM46540v1 177,401 1,960,317,893 265,720 13,701,221 29.07
376 Parnell's mustached bat (Mesoamerican 2021) Pteronotus mesoamericanus GCF_021234165.1_CSHL_Meso_final 333 2,074,649,091 12 276 30.91
377 particolored bat (primary hap 2024) Vespertilio murinus GCA_963924515.1_mVesMur1.1 178 1,925,577,803 980 196,000 37.48
378 Patagonian cavy Dolichotis patagonum GCA_004027295.1_DolPat_v1_BIUU 1,905,764 3,289,614,431 6,223 622,300 40.23
379 Pere David's deer Elaphurus davidianus GCA_002443075.1_Milu1.0 194,812 2,584,693,296 144,642 64,929,844 42.25
380 Philippine flying lemur (mCynVol1 alternate hap 2022) Cynocephalus volans GCA_027409165.1_mCynVol1.alt 1,750 2,453,279,509 0 0 39.54
381 Philippine flying lemur (mCynVol1 primary hap 2022) Cynocephalus volans GCA_027409185.1_mCynVol1.pri 131 2,814,434,834 116 32,500 39.52
382 pig (Bamei 2023) Sus scrofa GCA_030704935.1_ASM3070493v1 379 2,671,498,991 878 439,000 40.58
383 pig (Duroc 2017) Sus scrofa GCF_000003025.6_Sscrofa11.1 613 2,501,912,388 544 29,864,684 45.16
384 pig (USMARCv1 2017) Sus scrofa GCA_002844635.1_USMARCv1.0 14,157 2,755,438,182 661 132,307,944 45.28
385 plains zebra (Etosha38 2022 UCLA) Equus quagga GCF_021613505.1_UCLA_HA_Equagga_1.0 11,098 2,496,156,151 14,595 23,941,376 38.38
386 platypus (alternate hap Pmale09 2020) Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 5,843 1,575,252,831 25 5,525 51.65
387 platypus (Pmale09 v4 2020) Ornithorhynchus anatinus GCF_004115215.2_mOrnAna1.pri.v4 322 1,859,281,927 515 15,158,118 50.98
388 polar bear (Baiyulong BGI 2014 refseq) Ursus maritimus GCF_000687225.1_UrsMar_1.0 23,819 2,301,379,344 110,343 38,357,410 39.53
389 polar bear (UCSC 2021) Ursus maritimus GCF_017311325.1_ASM1731132v1 3,900 2,330,485,441 45,532 9,481,082 40.62
390 prairie deer mouse (Baylor 2013) Peromyscus maniculatus bairdii GCF_000500345.1_Pman_1.0 30,921 2,630,541,020 182,263 157,004,803 30.10
391 prairie deer mouse (Harvard 2020) Peromyscus maniculatus bairdii GCF_003704035.1_HU_Pman_2.1.3 8,524 2,512,439,762 147,442 124,546,479 29.88
392 prairie vole Microtus ochrogaster GCF_000317375.1_MicOch1.0 6,335 2,287,340,943 180,677 183,019,268 27.36
393 pronghorn (PH2016 2021) Antilocapra americana GCA_021018645.1_ASM2101864v1 66,453 2,669,373,955 74,027 84,658,785 34.68
394 Przewalski's horse (Burgud 2014 refseq) Equus przewalskii GCF_000696695.1_Burgud 53,097 2,395,954,271 80,963 21,135,449 40.20
395 puma (SC36_Marlon 2018 refseq) Puma concolor GCF_003327715.1_PumCon1.0 2,175 2,432,966,684 178,992 114,069,938 40.74
396 puma (L17-30 primary hap 2023) Puma concolor GCA_028749985.1_mPumCon1.0.hap1 256 2,373,442,513 134 13,400 34.72
397 puma (L17-30 alternate hap 2023) Puma concolor GCA_028749965.1_mPumCon1.0.hap2 208 2,496,324,563 96 9,600 35.10
398 punctate agouti Dasyprocta punctata GCA_004363535.1_DasPun_v1_BIUU 986,664 3,012,098,298 6,459 645,900 36.59
399 pygmy sperm whale Kogia breviceps GCA_004363705.1_KogBre_v1_BIUU 1,252,072 2,759,698,159 6,053 605,300 43.68
400 pygmy sperm whale (mKogBre1 2022 refseq) Kogia breviceps GCF_026419965.1_mKogBre1_haplotype_1 581 2,555,855,246 143 4,797,769 39.97
401 pygmy sperm whale (mKogBre1 haplotype 2 2022) Kogia breviceps GCA_026419985.1_mKogBre1_haplotype_2 391 2,613,416,393 138 319,582 41.60
402 rabbit (New Zealand White DNA-2018 2021 refseq) Oryctolagus cuniculus GCF_009806435.1_UM_NZW_1.0 3,160 2,841,507,030 18,178 65,881,331 39.77
403 rabbit (Thorbecke 2009 Broad refseq) Oryctolagus cuniculus GCF_000003625.3_OryCun2.0 3,241 2,737,462,810 80,789 133,467,217 42.57
404 raccoon dog (2021) Nyctereutes procyonoides GCF_905146905.1_NYPRO_anot_genome 811 2,387,097,583 70 499,771 32.97
405 Rambouillet sheep (Baylor 2017) Ovis aries GCF_002742125.1_Oar_rambouillet_v1.0 2,641 2,869,914,396 4,847 383,065 47.40
406 Rambouillet sheep (U.Idaho 2021) Ovis aries GCF_016772045.1_ARS-UI_Ramb_v2.0 142 2,628,146,905 84 42,000 46.86
407 ratel Mellivora capensis GCA_004024625.1_MelCap_v1_BIUU 2,068,312 3,091,173,380 6,511 651,100 41.96
408 red bat Lasiurus borealis GCA_004026805.1_LasBor_v1_BIUU 518,900 2,857,590,849 6,380 638,000 39.98
409 red deer (2021) Cervus elaphus GCF_910594005.1_mCerEla1.1 144 2,886,603,524 40 10,400 44.67
410 red deer (alternate hap 2021) Cervus elaphus GCA_910593805.1_mCerEla1.1_alternate_haplotype 4,021 2,903,978,491 22 11,000 50.27
411 red fox Vulpes vulpes GCF_003160815.1_VulVul2.2 82,424 2,421,568,072 246,167 71,714,148 39.64
412 reed vole (MF-2015 2020) Microtus fortis GCF_014885135.2_M_Fortis_MF-2015_v1.1 10,460 2,189,376,753 67,118 96,436,015 28.49
413 Reeves' muntjac (alternate hap 2024) Muntiacus reevesi GCA_963930665.1_mMunRee1.1_alternate_haplotype 8,892 2,863,788,737 0 0 48.30
414 reindeer (US061 2019) Rangifer tarandus GCA_004026565.1_RanTarSib_v1_BIUU 1,360,739 2,897,299,934 4,769 476,900 46.12
415 reindeer (2023) Rangifer tarandus GCA_963422255.1_RTA_final 127,879 2,663,342,264 131,886 44,040,815 36.18
416 Rice's whale (hap1 2023) Balaenoptera ricei GCA_028017805.1_mBalRic1.hap1 1,039 2,844,045,133 131 62,437,235 42.12
417 Rice's whale (hap2 2023 refseq) Balaenoptera ricei GCF_028023285.1_mBalRic1.hap2 774 2,678,442,663 334 2,621,494 41.09
418 Rickett's big-footed myotis (AB-2021 2024) Myotis ricketti GCA_036010255.1_ASM3601025v1 105 2,000,337,603 0 0 36.26
419 Ryukyu mouse (v2 2017) Mus caroli GCF_900094665.2_CAROLI_EIJ_v1.1 3,077 2,552,825,103 306,599 280,223,092 31.97
420 Saanen dairy goat Capra hircus GCA_015443085.1_Saanen_v1 1,362 2,696,218,280 170 61,701 47.61
421 saddleback dolphin (alternate hap 2023) Delphinus delphis GCA_949987525.1_mDelDel1.1_alternate_haplotype 7,426 2,440,532,866 1 31 40.32
422 saddleback dolphin (primary hap 2023 refseq) Delphinus delphis GCF_949987515.1_mDelDel1.1 630 2,663,516,986 968 193,431 42.65
423 saiga antelope Saiga tatarica GCA_004024985.1_SaiTat_v1_BIUU 1,772,199 2,876,186,568 2,867 286,700 49.45
424 Schreibers' long-fingered bat Miniopterus schreibersii GCA_004026525.1_MinSch_v1_BIUU 177,620 1,775,846,775 6,918 691,800 29.69
425 scimitar-horned oryx Oryx dammah GCF_014754425.2_SCBI_Odam_1.1 9,089 2,707,182,720 16,241 18,916,020 46.45
426 Screaming hairy armadillo Chaetophractus vellerosus GCA_004027955.1_ChaVel_v1_BIUU 7,677,333 5,335,596,729 2,747 274,700 47.68
427 sea otter (GAN:26980312 2017 refseq) Enhydra lutris kenyoni GCF_002288905.1_ASM228890v2 6,768 2,455,105,646 23,134 29,682,816 40.97
428 Seba's short-tailed bat Carollia perspicillata GCA_004027735.1_CarPer_v1_BIUU 1,925,339 2,689,411,905 3,864 386,400 32.01
429 sheep (OAR_USU_Benz2616 2023) Ovis aries GCF_016772045.2_ARS-UI_Ramb_v3.0 143 2,654,063,983 84 42,000 40.63
430 sheep (Texel 2015) Ovis aries GCA_000298735.2_Oar_v4.0 5,465 2,615,499,683 44,566 28,008,926 45.67
431 shrew mouse Mus pahari GCF_900095145.1_PAHARI_EIJ_v1.1 2,581 2,475,012,951 269,643 235,052,033 34.77
432 Siberian hamster (SSSS 2022) Phodopus sungorus GCA_023856395.1_Psun_UM_1.1 7,756 2,119,204,330 88,601 7,863,181 29.22
433 Siberian musk deer (BS20 2019 Broad) Moschus moschiferus GCA_004024705.1_MosMos_v1_BIUU 1,175,703 2,966,355,811 19,764 1,976,400 49.78
434 small Madagascar hedgehog Echinops telfairi GCF_000313985.2_ASM31398v2 7,490 2,947,119,619 270,406 341,923,468 32.24
435 smoky shrew (2023) Sorex fumeus GCF_029834395.1_SorFum_2.1 497 2,873,555,620 0 0 48.22
436 snow leopard (11264 2022) Panthera uncia GCF_023721935.1_Puncia_PCG_1.0 2,636 2,433,989,369 23,786 17,131,389 34.73
437 snowshoe hare Lepus americanus GCA_004026855.1_LepAme_v1_BIUU 1,592,829 3,123,271,264 10,153 1,015,300 43.25
438 social tuco-tuco Ctenomys sociabilis GCA_004027165.1_CteSoc_v1_BIUU 807,571 2,834,814,551 16,191 1,619,100 38.40
439 soprano pipistrelle (alternate hap 2023) Pipistrellus pygmaeus GCA_949987765.1_mPipPyg2.1_alternate_haplotype 2,716 1,764,844,953 1 17 36.36
440 soprano pipistrelle (primary hap 2023) Pipistrellus pygmaeus GCA_949987585.1_mPipPyg2.1 243 1,895,125,685 161 32,017 37.73
441 South African ground squirrel Xerus inauris GCA_004024805.1_XerIna_v1_BIUU 577,370 2,601,418,404 9,745 974,500 34.95
442 Southeastern Asian house mouse (2022) Mus musculus castaneus GCA_921999005.2_CAST_EiJ_v3 147 2,519,863,764 278 20,418,215 40.16
443 southern elephant seal Mirounga leonina GCF_011800145.1_KU_Mleo_1.0 1,115 2,417,320,305 22,850 15,584,573 43.51
444 southern grasshopper mouse (2020) Onychomys torridus GCF_903995425.1_mOncTor1.1 2,949 2,468,394,440 2,143 26,162,626 32.74
445 southern multimammate mouse Mastomys coucha GCF_008632895.1_UCSF_Mcou_1 28 2,507,184,835 146,713 203,565,473 35.43
446 southern tamandua (mTamTet1 alternate hap 2022) Tamandua tetradactyla GCA_023853755.1_mTamTet1.alt 7,862 2,898,984,517 4 713 39.97
447 southern tamandua (mTamTet1 primary hap 2022) Tamandua tetradactyla GCA_023851605.1_mTamTet1.pri 201 3,205,741,135 961 17,897,414 45.80
448 southern three-banded armadillo Tolypeutes matacus GCA_004025125.1_TolMat_v1_BIUU 2,925,507 4,115,028,163 15,801 1,580,100 43.97
449 southern two-toed sloth (mChoDid1 alternate hap 2020) Choloepus didactylus GCA_015220265.1_mChoDid1.alt 11,980 3,180,649,806 70 76,707 40.66
450 southern two-toed sloth (mChoDid1 primary hap 2020) Choloepus didactylus GCF_015220235.1_mChoDid1.pri 146 3,214,702,648 1,243 80,992,407 40.51
451 southern white rhinoceros (SDZICR_KB13650 2012 refseq) Ceratotherium simum simum GCF_000283155.1_CerSimSim1.0 3,087 2,464,367,180 54,737 97,509,168 28.94
452 Sowerby's beaked whale Mesoplodon bidens GCA_004027085.1_MesBid_v1_BIUU 1,801,720 2,797,694,783 8,597 859,700 45.06
453 sperm whale (SW-GA 2023) Physeter catodon GCF_002837175.3_ASM283717v5 12,169 2,496,225,537 121,387 104,912,766 34.93
454 star-nosed mole Condylura cristata GCF_000260355.1_ConCri1.0 2,038 1,769,657,897 82,557 87,115,890 26.03
455 Steller sea lion Eumetopias jubatus GCF_004028035.1_ASM402803v1 7,222 2,417,469,577 18,994 14,214,605 43.31
456 Stephens's kangaroo rat Dipodomys stephensi GCA_004024685.1_DipSte_v1_BIUU 1,269,643 2,346,418,196 8,882 888,200 44.35
457 steppe mouse (ZRU 2018) Mus spicilegus GCA_003336285.1_MUSP714 37,536 2,496,083,520 123,681 105,748,500 40.63
458 straw-colored fruit bat Eidolon helvum GCA_000465285.1_ASM46528v1 133,538 1,837,754,460 154,908 7,319,795 32.82
459 stripe-headed round-eared bat Tonatia saurophila GCA_004024845.1_TonSau_v1_BIUU 249,810 2,105,886,965 2,860 286,000 30.52
460 striped dolphin (alternate hap 2023) Stenella coeruleoalba GCA_951394445.1_mSteCoe1.1_alternate_haplotype 3,464 2,485,529,352 0 0 40.98
461 striped dolphin (primary hap 2023) Stenella coeruleoalba GCA_951394435.1_mSteCoe1.1 638 2,691,423,227 993 198,431 43.09
462 striped hyena (BS54 2019 Broad) Hyaena hyaena GCA_004023945.1_HyaHya_v1_BIUU 350,223 2,445,474,026 11,849 1,184,900 42.43
463 striped hyena (Hyena2069 2018 Potsdam U) Hyaena hyaena GCF_003009895.1_ASM300989v1 5,761 2,374,733,219 23,058 16,792,966 41.62
464 Sumatran rhinoceros (Ipuh 2017) Dicerorhinus sumatrensis sumatrensis GCA_002844835.1_ASM284483v1 1,061,589 2,949,863,658 50,876 129,781,408 38.17
465 Sunda flying lemur (2014 WashU) Galeopterus variegatus GCF_000696425.1_G_variegatus-3.0.2 179,514 3,187,660,572 412,608 384,823,142 33.76
466 Sunda flying lemur (US047 2019 Broad) Galeopterus variegatus GCA_004027255.1_GalVar_v1_BIUU 1,649,747 3,225,624,221 5,895 589,500 38.66
467 tailed tailless bat Anoura caudifer GCA_004027475.1_AnoCau_v1_BIUU 337,255 2,206,589,520 4,640 464,000 32.74
468 takin (Tak-1 2022) Budorcas taxicolor GCF_023091745.1_Takin1.1 1,363 2,851,654,952 152 75,583 44.59
469 Talazac's shrew tenrec Nesogale talazaci GCA_004026705.1_MicTal_v1_BIUU 788,895 3,236,147,583 6,619 661,900 36.87
470 tammar wallaby (mMacEug1 primary hap 2023) Notamacropus eugenii GCA_028372415.1_mMacEug1.pri 315 3,448,908,279 515 6,550,697 39.53
471 tammar wallaby (mMacEug1 alternate hap 2023) Notamacropus eugenii GCA_028389975.1_mMacEug1.alt 14,283 1,837,738,679 2 62 38.42
472 Tasmanian devil Sarcophilus harrisii GCF_902635505.1_mSarHar1.11 106 3,086,674,442 354 46,771 44.34
473 thirteen-lined ground squirrel (2021 HiC) Ictidomys tridecemlineatus GCF_016881025.1_HiC_Itri_2 7,132 2,478,965,571 146,412 167,892,170 33.26
474 tiger Panthera tigris GCF_018350195.1_P.tigris_Pti1_mat1.1 75 2,408,695,688 65 10,100 42.83
475 Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022) Corynorhinus townsendii GCA_026230055.1_mCorTow1.0.hap1 391 2,104,912,948 219 21,900 37.42
476 Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022) Corynorhinus townsendii GCA_026230045.1_mCorTow1.0.hap2 182 1,961,562,149 217 21,700 36.37
477 Transcaucasian mole vole Ellobius lutescens GCA_001685075.1_ASM168507v1 58,423 2,353,188,398 440,846 93,278,981 27.55
478 Upper Galilee mountains blind mole rat (2095 2014 refseq) Nannospalax galili GCF_000622305.1_S.galili_v1.0 154,976 3,061,424,619 201,121 147,976,214 36.23
479 Vancouver Island marmot (RANI-1049 2019) Marmota vancouverensis GCA_005458795.1_GSC_VIM_1.0 23,903 2,504,017,057 296,819 140,246,106 32.08
480 vaquita (alternate hap mPhoSin1 2019) Phocoena sinus GCA_008692045.1_mPhoSin1.alt 9,469 995,426,950 1 19 43.86
481 vaquita (mPhoSin1 2019) Phocoena sinus GCF_008692025.1_mPhoSin1.pri 64 2,371,524,154 212 8,045,651 44.14
482 water buffalo (Mediterranean 2018) Bubalus bubalis GCF_003121395.1_ASM312139v1 509 2,655,780,776 410 373,500 47.14
483 water buffalo (Murrah 2021) Bubalus bubalis GCF_019923935.1_NDDB_SH_1 26 2,622,460,639 659 65,900 47.14
484 Weddell seal (WS11-02 2013 refseq) Leptonychotes weddellii GCF_000349705.1_LepWed1.0 16,711 3,156,902,762 152,836 933,738,633 29.40
485 western European hedgehog (2012 refseq) Erinaceus europaeus GCF_000296755.1_EriEur2.0 5,803 2,715,720,925 219,764 382,647,390 42.03
486 western European hedgehog (alternate hap 2023) Erinaceus europaeus GCA_950295305.1_mEriEur2.1_alternate_haplotype 26,600 1,850,742,846 1 200 53.70
487 western European hedgehog (primary hap 2023 refseq) Erinaceus europaeus GCF_950295315.1_mEriEur2.1 1,174 2,720,683,831 3,760 752,000 54.51
488 western European house mouse (WSB_EiJ v3 2022) Mus musculus domesticus GCA_921998345.2_WSB_EiJ_v3 232 2,519,257,336 1,233 28,490,451 40.23
489 western spotted skunk Spilogale gracilis GCA_004023965.1_SpiGra_v1_BIUU 422,009 2,463,318,012 11,822 1,182,200 40.80
490 white-beaked dolphin (alternate hap 2023) Lagenorhynchus albirostris GCA_949774935.1_mLagAlb1.1_alternate_haplotype 25,619 2,036,251,322 0 0 38.99
491 white-beaked dolphin (primary hap 2023 refseq) Lagenorhynchus albirostris GCF_949774975.1_mLagAlb1.1 410 2,544,835,795 1,070 214,000 39.75
492 white-footed mouse Peromyscus leucopus GCF_004664715.2_UCI_PerLeu_2.1 1,857 2,475,180,836 2,299 1,128,385 33.00
493 white-tailed deer (Pink-7 2017 refseq) Odocoileus virginianus texanus GCF_002102435.1_Ovir.te_1.0 17,026 2,380,505,687 107,058 21,568,183 40.94
494 white-toothed pygmy shrew (mSunEtr1 alternate hap 2022) Suncus etruscus GCA_024140225.1_mSunEtr1.alt.cur 14,815 1,515,382,512 26 820 45.74
495 white-toothed pygmy shrew (mSunEtr1 primary hap 2022) Suncus etruscus GCF_024139225.1_mSunEtr1.pri.cur 147 2,471,666,657 1,010 10,644,072 46.52
496 wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020) Camelus ferus GCF_009834535.1_BCGSAC_Cfer_1.0 2,043 2,087,093,976 2,345 234,500 33.34
497 wild Bactrian camel (CB1 Naran 2013 refseq) Camelus ferus GCF_000311805.1_CB1 13,334 2,009,194,609 60,971 23,778,176 33.55
498 wild goat Capra aegagrus GCA_000978405.1_CapAeg_1.0 89,498 2,828,873,048 279,195 235,145,392 41.64
499 western wild mouse (SPRET_EiJ v3 2022) Mus spretus GCA_921997135.2_SPRET_EiJ_v3 139 2,546,544,102 1,576 12,584,765 41.12
500 wild yak Bos mutus GCF_000298355.1_BosGru_v2.0 41,192 2,645,161,911 192,006 120,154,638 44.01
501 woodchuck (v1.1 L192 2022) Marmota monax GCF_021218885.2_Marmota_monax_Labrador192_F-V1.1 3,333 2,638,791,045 47 4,700 43.23
502 woodland dormouse Graphiurus murinus GCA_004027655.1_GraMur_v1_BIUU 1,267,939 2,815,014,629 15,691 1,569,100 42.24
503 woodland thicket rat Grammomys surdaster GCF_004785775.1_NIH_TR_1.0 23,656 2,412,664,998 76,623 34,663,040 37.61
504 Yangtze finless porpoise (v2 wild 2018 refseq) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.2_Neophocaena_asiaeorientalis_V1.1 13,696 2,284,626,297 52,647 16,346,815 35.61
505 Yangtze River dolphin (v1.1 BGI 2013 refseq) Lipotes vexillifer GCF_000442215.2_Lipotes_vexillifer_v1.1 24,810 2,419,495,777 123,788 32,137,463 36.59
506 yellow-bellied marmot (SJ_83 v2.1 2019) Marmota flaviventris GCF_003676075.3_GSC_YBM_2.1 31,760 2,574,345,955 35,509 52,490,435 32.65
507 yellow-footed antechinus (v2 Samford, QLD, Australia AdamAnt 2021) Antechinus flavipes GCF_016432865.1_AdamAnt_v2 486 3,192,661,299 620 309,002 42.70
508 yellow-spotted hyrax Heterohyrax brucei GCA_004026845.1_HetBruBak_v1_BIUU 967,933 3,618,151,652 3,815 381,500 45.18
509 yellow-spotted hyrax (mHetBru1 alternate hap 2023) Heterohyrax brucei GCA_028571665.1_mHetBru1.alt 4,168 3,021,267,164 1 32 44.05
510 yellow-spotted hyrax (mHetBru1 2023) Heterohyrax brucei GCA_028571685.1_mHetBru1.pri 62 3,488,059,404 276 68,688 45.91
511 Yuma myotis (MYYU_CA2020_CCGP alternate hap 2023) Myotis yumanensis GCA_028536395.1_mMyoYum1.0.hap2 250 2,050,521,808 215 21,500 37.27
512 Yuma myotis (MYYU_CA2020_CCGP primary hap 2023) Myotis yumanensis GCA_028538775.1_mMyoYum1.0.hap1 476 1,952,500,671 209 20,900 36.36
513 zebu cattle (Nelore 2014 refseq) Bos indicus GCF_000247795.1_Bos_indicus_1.0 32 2,673,965,444 6,941,272 204,955,425 43.27
TOTALS:total assembly count 513 108,006,729 1,295,544,449,060 40,207,195 25,214,209,427  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 207 assemblies assembly stats track stats
Mammals 513 assemblies assembly stats track stats
Birds 327 assemblies assembly stats track stats
Fishes 358 assemblies assembly stats track stats
other vertebrates 201 assemblies assembly stats track stats
Invertebrates 648 assemblies assembly stats track stats
Plants 252 assemblies assembly stats track stats
Fungi 612 assemblies assembly stats track stats
Viruses 265 assemblies assembly stats track stats
Bacteria 75 assemblies assembly stats track stats
legacy/superseded 437 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 798 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats