Bacteria Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.

See also: hub accessassembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser
ncbiRefSeq xenoRefGene augustus
genes
Ensembl
genes
gc5 base gaps assembly
sequences
Repeat
Masker
TRF
simpleRepeat
window
Masker
cpg
islands
1 Acinetobacter baumannii (17978UN 2021)
GCF_019356215.1
n/a n/a n/a n/a 38.90
(100.00 %)
n/a 4
(100.00 %)
n/a 112
(0.39 %)
23,675
(11.89 %)
55
(1.10 %)
2 Acinetobacter baumannii (ATCC 17978 2021)
GCA_902728005.1
n/a n/a n/a n/a 38.90
(100.00 %)
n/a 4
(100.00 %)
n/a 115
(0.39 %)
22,872
(11.47 %)
53
(1.10 %)
3 Acinetobacter baumannii (ATCC 19606 2016)
GCA_900011295.1
n/a n/a n/a n/a 39.06
(99.99 %)
2
(0.00 %)
116
(100.00 %)
n/a 134
(0.56 %)
22,549
(11.48 %)
46
(0.85 %)
4 Actinobacillus pleuropneumoniae serovar 5b (L20 2007)
GCA_000015885.1
n/a n/a n/a n/a 41.30
(100.00 %)
n/a 1
(100.00 %)
n/a 62
(0.39 %)
11,379
(9.68 %)
0
(0.00 %)
5 Anaplasma phagocytophilum str. (HGE1 2013)
GCA_000478425.1
n/a n/a n/a n/a 41.63
(100.00 %)
n/a 2
(100.00 %)
n/a 81
(1.57 %)
2,625
(6.01 %)
23
(0.57 %)
6 Arthrobacter sp. SLBN-53 (NRRL B-3805 2016)
GCA_001580405.1
n/a n/a n/a n/a 66.89
(100.00 %)
n/a 1
(100.00 %)
n/a 424
(0.41 %)
44,060
(18.81 %)
1
(100.00 %)
7 Bacillus mojavensis (PS17 2020)
GCA_016413745.1
n/a n/a n/a n/a 43.87
(100.00 %)
n/a 1
(100.00 %)
n/a 75
(0.20 %)
23,826
(11.33 %)
197
(2.85 %)
8 Bacillus subtilis strain 168
GCF_000009045.1
n/a n/a n/a n/a 43.51
(100.00 %)
n/a 1
(100.00 %)
n/a 55
(0.10 %)
23,994
(11.04 %)
232
(3.62 %)
9 Bacillus subtilis (NCD-2 2017)
GCA_002556525.1
n/a n/a n/a n/a 43.53
(100.00 %)
n/a 1
(100.00 %)
n/a 64
(0.12 %)
23,678
(11.00 %)
227
(3.62 %)
10 Burkholderia multivorans (ATCC 17616 2007)
GCA_000018505.1
n/a n/a n/a n/a 66.69
(100.00 %)
n/a 4
(100.00 %)
n/a 769
(0.91 %)
72,959
(35.08 %)
4
(100.00 %)
11 Clostridium beijerinckii (DSM 791 2021)
GCF_018223745.1
n/a n/a n/a n/a 29.87
(100.00 %)
n/a 2
(100.00 %)
n/a 364
(0.57 %)
50,825
(22.06 %)
48
(0.88 %)
12 Clostridium butyricum (DSM 10702 2020)
GCA_014131795.1
n/a n/a n/a n/a 28.74
(100.00 %)
n/a 4
(100.00 %)
n/a 297
(0.36 %)
45,671
(25.32 %)
37
(0.56 %)
13 Clostridium saccharoperbutylacetonicum N1-4HMT (ATCC 27021 2013)
GCF_000334435.1
n/a n/a n/a n/a 29.43
(99.99 %)
2
(0.00 %)
212
(100.00 %)
n/a 401
(0.42 %)
57,640
(22.92 %)
7
(0.08 %)
14 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 DOE-JGI)
GCF_000429805.1
n/a n/a n/a n/a 30.84
(99.97 %)
1
(0.03 %)
45
(99.97 %)
n/a 150
(0.23 %)
26,457
(21.36 %)
4
(0.08 %)
15 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Nanjing Univ. of Technology)
GCF_000359585.1
n/a n/a n/a n/a 30.84
(100.00 %)
n/a 76
(100.00 %)
n/a 164
(0.26 %)
26,260
(21.27 %)
3
(0.08 %)
16 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2015 Tokyo Univ. Marine Science and Technology)
GCA_000974305.1
n/a n/a n/a n/a 31.78
(99.94 %)
7
(0.00 %)
704
(100.00 %)
n/a 89
(0.14 %)
20,221
(18.24 %)
3
(0.09 %)
17 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Univ. Cattolica del Sacro Cuore)
GCF_000392375.2
n/a n/a n/a n/a 30.82
(99.99 %)
n/a 174
(100.00 %)
n/a 142
(0.20 %)
26,073
(21.16 %)
5
(0.09 %)
18 Clostridium tyrobutyricum (KCTC 5387 2016 KAIST)
GCF_001642655.1
n/a n/a n/a n/a 31.01
(100.00 %)
n/a 2
(100.00 %)
n/a 163
(0.26 %)
27,424
(21.32 %)
20
(0.48 %)
19 Corynebacterium glutamicum (ATCC 13032 2004)
GCA_000011325.1
n/a n/a n/a n/a 53.81
(100.00 %)
n/a 1
(100.00 %)
n/a 118
(0.18 %)
8,376
(4.25 %)
1
(99.99 %)
20 Desulfovibrio desulfuricans (DSM 642 2013)
GCA_000420465.1
n/a n/a n/a n/a 57.36
(100.00 %)
n/a 20
(100.00 %)
n/a 63
(0.09 %)
21,875
(12.13 %)
51
(97.19 %)
21 Desulfovibrio vulgaris str. (Hildenborough 2004)
GCA_000195755.1
n/a n/a n/a n/a 63.28
(100.00 %)
n/a 2
(100.00 %)
n/a 241
(0.36 %)
18,967
(8.89 %)
2
(100.00 %)
22 E. coli (B C2566 2016)
GCF_001559615.2
n/a n/a n/a n/a 50.81
(100.00 %)
n/a 1
(100.00 %)
n/a 78
(0.39 %)
18,625
(7.36 %)
1
(100.00 %)
23 E. coli (B C3029 2016)
GCF_001559635.1
n/a n/a n/a n/a 50.82
(100.00 %)
n/a 1
(100.00 %)
n/a 77
(0.38 %)
18,158
(6.98 %)
1
(100.00 %)
24 E. coli (BE104 2019)
GCF_005890115.1
n/a n/a n/a n/a 50.76
(100.00 %)
n/a 1
(100.00 %)
n/a 102
(0.49 %)
19,984
(7.40 %)
1
(99.99 %)
25 E. coli (BL21(DE3) 2010)
GCA_000022665.2
n/a n/a n/a n/a 50.83
(100.00 %)
n/a 1
(100.00 %)
n/a 77
(0.38 %)
18,815
(7.35 %)
1
(99.99 %)
26 E. coli (K-12 BW25113 2014 refseq)
GCF_000750555.1
n/a n/a n/a n/a 50.78
(100.00 %)
n/a 1
(100.00 %)
n/a 90
(0.38 %)
19,508
(7.44 %)
1
(99.99 %)
27 E. coli (K-12 C3026 2016)
GCF_001559675.1
n/a n/a n/a n/a 50.76
(100.00 %)
n/a 2
(100.00 %)
n/a 102
(0.44 %)
20,688
(7.36 %)
12
(99.19 %)
28 E. coli (K-12 DHB4 2016)
GCF_001559655.1
n/a n/a n/a n/a 50.73
(100.00 %)
n/a 2
(100.00 %)
n/a 100
(0.44 %)
20,468
(7.59 %)
2
(99.99 %)
29 E. coli (K-12 MG1655 2013 refseq)
GCF_000005845.2
n/a n/a n/a n/a 50.79
(100.00 %)
n/a 1
(100.00 %)
n/a 93
(0.40 %)
19,730
(7.53 %)
1
(99.99 %)
30 E. coli (Nissle 1917 2014)
GCA_000714595.1
n/a n/a n/a n/a 50.58
(100.00 %)
79
(0.00 %)
80
(100.00 %)
n/a 183
(1.59 %)
18,242
(6.52 %)
1
(99.97 %)
31 Ehrlichia chaffeensis str. (Arkansas 2006)
GCF_000013145.1
n/a n/a n/a n/a 30.10
(100.00 %)
n/a 1
(100.00 %)
n/a 157
(4.45 %)
8,909
(15.31 %)
2
(0.04 %)
32 Janthinobacterium (BJB312 2017)
GCA_002735715.1
n/a n/a n/a n/a 62.61
(100.00 %)
n/a 38
(100.00 %)
n/a 324
(0.49 %)
60,023
(25.47 %)
40
(99.53 %)
33 Janthinobacterium (BJB1 2017)
GCA_002735775.2
n/a n/a n/a n/a 63.35
(100.00 %)
n/a 56
(100.00 %)
n/a 326
(0.37 %)
62,065
(27.35 %)
53
(99.81 %)
34 Klebsiella aerogenes (KCTC 2190 2011)
GCA_000215745.1
n/a n/a n/a n/a 54.85
(100.00 %)
1
(0.00 %)
2
(100.00 %)
n/a 121
(0.42 %)
34,291
(14.01 %)
8
(99.38 %)
35 Klebsiella pneumoniae (ATCC BAA-2146 2016)
GCA_000364385.3
n/a n/a n/a n/a 56.97
(100.00 %)
n/a 5
(100.00 %)
n/a 120
(0.47 %)
42,179
(16.44 %)
33
(99.46 %)
36 Lacticaseibacillus paracasei (LC2W 2011)
GCA_000194785.1
n/a n/a n/a n/a 46.31
(100.00 %)
n/a 2
(100.00 %)
n/a 59
(0.29 %)
10,445
(5.82 %)
53
(0.81 %)
37 Lactobacillus kefiranofaciens (KR 2017)
GCA_002276565.1
n/a n/a n/a n/a 37.40
(99.99 %)
n/a 97
(100.00 %)
n/a 106
(0.37 %)
12,540
(11.80 %)
27
(0.61 %)
38 Lactobacillus kefiranofaciens (ATCC 43761 2016)
GCA_900103655.1
n/a n/a n/a n/a 37.21
(99.99 %)
2
(0.01 %)
84
(100.00 %)
n/a 112
(0.27 %)
12,848
(11.34 %)
27
(0.54 %)
39 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2014)
GCA_000615685.1
n/a n/a n/a n/a 37.21
(99.99 %)
n/a 123
(100.00 %)
n/a 115
(0.27 %)
12,912
(11.58 %)
28
(0.57 %)
40 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2015)
GCA_001435275.1
n/a n/a n/a n/a 37.22
(99.99 %)
10
(0.00 %)
133
(100.00 %)
n/a 117
(0.30 %)
12,967
(11.63 %)
28
(0.56 %)
41 Lactobacillus kefiranofaciens (ASM143419v1 JCM 8572 DSM 10550 2015)
GCA_001434195.1
n/a n/a n/a n/a 37.47
(99.97 %)
6
(0.01 %)
138
(100.00 %)
n/a 81
(0.24 %)
11,892
(11.46 %)
30
(0.69 %)
42 Lactobacillus kefiranofaciens (ASM131133v1 JCM 8572 JSM 10550 2015)
GCA_001311335.1
n/a n/a n/a n/a 37.41
(99.99 %)
n/a 104
(100.00 %)
n/a 78
(0.24 %)
11,724
(11.51 %)
29
(0.68 %)
43 Lactobacillus kefiranofaciens (LKK75 2019)
GCA_009184665.1
n/a n/a n/a n/a 37.38
(100.00 %)
n/a 1
(100.00 %)
n/a 113
(0.28 %)
13,039
(11.33 %)
30
(1.19 %)
44 Lactobacillus kefiranofaciens (ZW3 2011)
GCA_000214785.1
n/a n/a n/a n/a 37.36
(100.00 %)
n/a 3
(100.00 %)
n/a 120
(0.29 %)
12,963
(11.07 %)
31
(1.17 %)
45 Lactococcus lactis (IL1403 2018)
GCA_003722275.1
n/a n/a n/a n/a 35.33
(100.00 %)
1
(0.00 %)
2
(100.00 %)
n/a 85
(0.42 %)
17,438
(16.62 %)
32
(0.72 %)
46 Leuconostoc citreum (KM20 2008)
GCA_000026405.1
n/a n/a n/a n/a 38.87
(100.00 %)
n/a 5
(100.00 %)
n/a 48
(0.46 %)
8,656
(8.35 %)
19
(1.37 %)
47 Limosilactobacillus fermentum AGR1485
GCF_011032765.1
n/a n/a n/a n/a 51.15
(100.00 %)
n/a 1
(100.00 %)
n/a 68
(1.17 %)
5,312
(5.45 %)
1
(99.98 %)
48 Limosilactobacillus fermentum AGR1487
GCF_011032745.1
n/a n/a n/a n/a 52.17
(100.00 %)
n/a 1
(100.00 %)
n/a 43
(0.27 %)
5,358
(4.69 %)
0
(0.00 %)
49 Limosilactobacillus fermentum SRCM 103290
GCF_004063635.1
n/a n/a n/a n/a 51.37
(100.00 %)
n/a 1
(100.00 %)
n/a 61
(0.23 %)
5,590
(4.50 %)
1
(97.52 %)
50 Limosilactobacillus fermentum YL-11
GCF_003860425.1
n/a n/a n/a n/a 51.94
(100.00 %)
n/a 1
(100.00 %)
n/a 46
(0.65 %)
5,855
(5.79 %)
1
(99.97 %)
51 Lysinibacillus sphaericus (C3-41 2008)
GCA_000017965.1
n/a n/a n/a n/a 37.13
(100.00 %)
n/a 2
(100.00 %)
n/a 121
(0.31 %)
30,334
(12.48 %)
21
(1.17 %)
52 Methylorubrum extorquens (CM4 2008)
GCA_000021845.1
n/a n/a n/a n/a 68.08
(100.00 %)
n/a 3
(100.00 %)
n/a 361
(0.37 %)
55,843
(22.73 %)
3
(100.00 %)
53 Mycobacterium avium (hominissuis A5 2014)
GCF_000696715.1
n/a n/a n/a n/a 69.40
(100.00 %)
n/a 50
(100.00 %)
n/a 550
(0.52 %)
51,968
(27.34 %)
50
(99.99 %)
54 Mycobacterium palustre (DSM 44572 2017)
GCF_002101785.1
n/a n/a n/a n/a 68.50
(99.99 %)
n/a 158
(100.00 %)
n/a 585
(0.53 %)
55,559
(24.92 %)
158
(99.93 %)
55 Mycobacterium sp. (VKM Ac-1817D 2014)
GCA_000416365.2
n/a n/a n/a n/a 66.20
(100.00 %)
n/a 1
(100.00 %)
n/a 261
(0.21 %)
49,141
(17.12 %)
1
(100.00 %)
56 Mycobacterium tuberculosis (ASM19595v2 H37Rv 2013)
GCF_000195955.2
n/a n/a n/a n/a 65.61
(100.00 %)
n/a 1
(100.00 %)
n/a 1,059
(1.47 %)
34,168
(17.69 %)
1
(100.00 %)
57 Mycobacterium tuberculosis (ASM27773v2 H37Rv 2013)
GCA_000277735.2
n/a n/a n/a n/a 65.62
(100.00 %)
n/a 1
(100.00 %)
n/a 1,067
(1.49 %)
34,174
(17.70 %)
1
(100.00 %)
58 Neisseria meningitidis (Z2491 2003)
GCA_000009105.1
n/a n/a n/a n/a 51.81
(100.00 %)
n/a 1
(100.00 %)
n/a 190
(1.51 %)
13,500
(15.34 %)
1
(99.91 %)
59 Nitratireductor (SY7 2020)
GCA_007922615.2
n/a n/a n/a n/a 64.89
(100.00 %)
n/a 1
(100.00 %)
n/a 129
(0.29 %)
43,679
(19.65 %)
1
(100.00 %)
60 Nitrosomonas europaea (ATCC 19718 2003)
GCA_000009145.1
n/a n/a n/a n/a 50.72
(100.00 %)
n/a 1
(100.00 %)
n/a 68
(0.39 %)
8,683
(6.11 %)
1
(99.98 %)
61 Pectobacterium brasiliense (1692 2020)
GCA_009873295.1
n/a n/a n/a n/a 52.15
(100.00 %)
n/a 1
(100.00 %)
n/a 157
(0.66 %)
21,754
(7.97 %)
1
(100.00 %)
62 Plasmodium malariae (2016)
GCF_900090045.1
5,965
(37.07 %)
n/a n/a n/a 24.38
(100.00 %)
n/a 62
(100.00 %)
n/a 47,855
(7.58 %)
320,327
(54.68 %)
21
(0.02 %)
63 Pseudomonas aeruginosa (PAO1 2006)
GCF_000006765.1
n/a n/a n/a n/a 66.56
(100.00 %)
n/a 1
(100.00 %)
n/a 208
(0.43 %)
58,643
(23.70 %)
1
(100.00 %)
64 Pseudomonas fluorescens (SBW25 2009)
GCF_000009225.2
n/a n/a n/a n/a 60.50
(100.00 %)
n/a 1
(100.00 %)
n/a 225
(0.43 %)
44,434
(14.25 %)
0
(0.00 %)
65 Rhodobacter capsulatus (SB 1003 2010)
GCF_000021865.1
n/a n/a n/a n/a 66.56
(100.00 %)
n/a 2
(100.00 %)
n/a 306
(0.50 %)
37,423
(23.53 %)
2
(100.00 %)
66 Rhodococcus erythropolis (CCM2595 2013)
GCA_000454045.1
n/a n/a n/a n/a 62.45
(100.00 %)
n/a 2
(100.00 %)
n/a 461
(0.39 %)
37,291
(12.05 %)
2
(100.00 %)
67 Salmonella enterica (Typhimurium LT2 2016)
GCF_000006945.2
n/a n/a n/a n/a 52.24
(100.00 %)
n/a 2
(100.00 %)
n/a 77
(0.25 %)
25,684
(9.55 %)
2
(99.99 %)
68 Salmonella enterica subsp. enterica serovar Typhimurium str. (14028S 2009)
GCA_000022165.1
n/a n/a n/a n/a 52.21
(100.00 %)
n/a 2
(100.00 %)
n/a 80
(0.24 %)
25,976
(9.65 %)
2
(99.99 %)
69 Shigella flexneri 5a (M90T 2019)
GCA_004799585.1
n/a n/a n/a n/a 50.67
(100.00 %)
n/a 2
(100.00 %)
n/a 76
(0.22 %)
13,570
(7.88 %)
19
(97.31 %)
70 Staphylococcus aureus (JE2 2017)
GCA_002085525.1
n/a n/a n/a n/a 32.78
(100.00 %)
n/a 1
(100.00 %)
n/a 138
(1.03 %)
22,355
(16.38 %)
11
(0.54 %)
71 Starmerella bacillaris (NP2 2017)
GCA_002270425.1
n/a 1,225
(9.91 %)
n/a n/a 39.47
(99.93 %)
145
(0.07 %)
117
(100.00 %)
n/a 3,747
(1.49 %)
39,377
(10.61 %)
450
(3.65 %)
72 Streptomyces ambofaciens (ATCC 23877 2015)
GCF_001267885.1
n/a n/a n/a n/a 72.19
(100.00 %)
n/a 2
(100.00 %)
n/a 2,423
(1.48 %)
74,062
(23.83 %)
2
(100.00 %)
73 Streptomyces ambofaciens (DSM 40697 2016)
GCF_001632865.1
n/a n/a n/a n/a 72.33
(100.00 %)
n/a 1
(100.00 %)
n/a 2,321
(1.52 %)
72,368
(23.98 %)
1
(100.00 %)
74 Streptomyces bottropensis (ATCC 25435 2013)
GCA_000383595.1
n/a n/a n/a n/a 71.19
(100.00 %)
7
(0.00 %)
4
(100.00 %)
n/a 2,224
(1.21 %)
78,043
(22.95 %)
1
(100.00 %)
75 Stutzerimonas degradans (XL272 2019)
GCA_009740185.1
n/a n/a n/a n/a 64.69
(100.00 %)
n/a 1
(100.00 %)
n/a 77
(0.17 %)
35,942
(20.69 %)
1
(100.00 %)
TOTALS:total assembly count 75

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 211 assemblies assembly stats track stats
Mammals 513 assemblies assembly stats track stats
Birds 327 assemblies assembly stats track stats
Fishes 358 assemblies assembly stats track stats
other vertebrates 201 assemblies assembly stats track stats
Invertebrates 648 assemblies assembly stats track stats
Plants 252 assemblies assembly stats track stats
Fungi 612 assemblies assembly stats track stats
Viruses 265 assemblies assembly stats track stats
Bacteria 75 assemblies assembly stats track stats
legacy/superseded 437 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 798 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats