Birds Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of birds only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Abyssinian ground-hornbill (2019) Bucorvus abyssinicus GCA_009769605.1_bBucAby1.pri 112 1,132,597,561 204 8,074,542 19.24
2 Abyssinian ground-hornbill (alternate hap 2019) Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt 3,527 1,024,138,499 0 0 18.52
3 acorn woodpecker (bairdi alternate hap 2022) Melanerpes formicivorus GCA_026170555.1_bMelFor1.0.a 2,294 1,438,781,011 1,555 155,500 43.03
4 acorn woodpecker (bairdi primary hap 2022) Melanerpes formicivorus GCA_026170545.1_bMelFor1.0.p 3,174 1,323,584,679 1,317 131,700 42.41
5 Adelie penguin Pygoscelis adeliae GCF_000699105.1_ASM69910v1 19,265 1,216,617,519 95,110 54,157,596 18.32
6 African ostrich Struthio camelus australis GCF_000698965.1_ASM69896v1 6,915 1,225,041,896 72,649 40,253,160 17.81
7 American crow Corvus brachyrhynchos GCF_000691975.1_ASM69197v1 10,547 1,091,312,783 79,099 39,530,922 18.46
8 American flamingo (2019) Phoenicopterus ruber ruber GCA_009819775.1_bPhoRub2.pri 90 1,246,226,932 280 8,602,116 20.94
9 American flamingo (alternate hap 2019) Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt 3,529 1,167,509,893 0 0 20.15
10 Anna's hummingbird (alternate hap BGI_N300 2018) Calypte anna GCA_003957575.1_bCalAnn1_v1.h 3,803 952,083,371 6 2,998 20.33
11 Anna's hummingbird (BGI_N300 2019 refseq) Calypte anna GCF_003957555.1_bCalAnn1_v1.p 159 1,059,687,259 429 16,096,788 20.87
12 bald eagle Haliaeetus leucocephalus GCF_000737465.1_Haliaeetus_leucocephalus-4.0 1,023 1,178,409,481 30,862 19,163,137 18.49
13 bar-tailed trogon Apaloderma vittatum GCF_000703405.1_ASM70340v1 54,728 1,070,836,417 50,921 4,539,803 19.89
14 barn owl (U. Lausanne 2021) Tyto alba GCF_018691265.1_T.alba_DEE_v4.0 70 1,249,867,532 259 51,418,967 19.01
15 Barn swallow (bHirRus1 v3 alternate hap 2021) Hirundo rustica GCA_015227815.3_bHirRus1.alt.v3 2,476 936,032,861 6 1,226 20.47
16 Barn swallow (bHirRus1 v3 primary hap 2021 refseq) Hirundo rustica GCF_015227805.2_bHirRus1.pri.v3 617 1,105,955,550 1,102 25,534,411 21.06
17 Bengalese finch Lonchura striata domestica GCF_005870125.1_lonStrDom2 2,015 1,060,269,806 37,862 31,260,240 20.10
18 black-capped chickadee (hap1 2023) Poecile atricapillus GCF_030490865.1_bPoeAtr1.hap1 307 1,251,133,642 404 958,949 24.42
19 black-capped chickadee (hap2 2023) Poecile atricapillus GCA_030490855.1_bPoeAtr1.hap2 157 987,998,379 240 590,213 23.49
20 black-headed gull (Kunming 2023) Chroicocephalus ridibundus GCA_030820635.1_KIZ_Lrid_1.0 297 1,243,762,172 149 14,900 23.13
21 black-headed gull (primary hap 2024) Chroicocephalus ridibundus GCA_963924245.1_bChrRid1.1 729 1,417,571,123 462 92,400 31.33
22 black-legged kittiwake (bRisTri1 2023 refseq) Rissa tridactyla GCF_028500815.1_bRisTri1.patW.cur.20221130 716 1,353,621,101 283 786,373 26.72
23 black-legged kittiwake (bRisTri1.mat 2023) Rissa tridactyla GCA_028501385.1_bRisTri1.mat.cur.20221130 733 1,268,441,171 223 639,872 27.28
24 blackcap (2019) Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri 189 1,066,786,587 413 11,925,354 19.80
25 blackcap (alternate hap 2019) Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt 3,566 991,486,332 2 600 19.69
26 black swan (v2 Queensland, Australia AKBS03 2022) Cygnus atratus GCF_013377495.2_CAtr_DNAZoo_HiC_assembly 568 1,124,233,768 130 65,000 21.50
27 black-throated flowerpiercer Diglossa brunneiventris GCA_019023105.1_LSU_DiBr_2.0 600 1,079,473,785 970 85,047 20.78
28 blue tit Cyanistes caeruleus GCF_002901205.1_cyaCae2 29,297 1,186,980,630 24,797 88,067,852 18.90
29 blue-and-yellow macaw (hap1 2023) Ara ararauna GCA_028858755.1_bAraAra1.hap1 246 1,224,360,198 107 988,129 24.87
30 blue-and-yellow macaw (hap2 2023) Ara ararauna GCA_028858555.1_bAraAra1.hap2 274 1,302,242,811 130 1,106,509 28.73
31 blue-crowned manakin Lepidothrix coronata GCF_001604755.1_Lepidothrix_coronata-1.0 4,612 1,079,577,334 22,456 22,384,553 19.20
32 blue-fronted amazon (AMXYW 2021) Amazona aestiva GCA_017639355.1_Aaes_hic 1,498 1,130,393,257 3,560,856 78,205,203 17.92
33 blue-fronted amazon (FVVF132 2015) Amazona aestiva GCA_001420675.1_ASM142067v1 3,232 1,129,535,839 3,559,082 77,331,237 17.93
34 brown eared-pheasant Crossoptilon mantchuricum GCA_019593555.1_cma1 2,408 1,013,441,081 114,232 13,649,759 20.28
35 brown headed cowbird (v1.1 BHLD 08-10-18 2022) Molothrus ater GCF_012460135.2_BPBGC_Mater_1.1 374 1,087,236,743 318 63,400 21.32
36 brown kiwi Apteryx mantelli mantelli GCF_001039765.1_AptMant0 24,718 1,523,969,783 368,297 212,971,013 14.69
37 brown roatelo Mesitornis unicolor GCF_000695765.1_ASM69576v1 67,520 1,087,290,853 51,602 3,812,826 19.42
38 budgerigar (v6.3 2021 WashU) Melopsittacus undulatus GCF_000238935.1_Melopsittacus_undulatus_6.3 25,212 1,117,373,619 51,022 30,758,804 19.08
39 budgerigar (maternal 2020) Melopsittacus undulatus GCA_012275265.1_bMelUnd1.mat 930 1,169,393,027 388 67,787,495 20.82
40 budgerigar (maternal Z 2020 refseq) Melopsittacus undulatus GCF_012275295.1_bMelUnd1.mat.Z 864 1,171,617,451 284 3,236,129 22.13
41 budgerigar (paternal 2020) Melopsittacus undulatus GCA_012275275.1_bMelUnd1.pat 330 1,124,753,724 737 11,458,836 20.35
42 burrowing owl Athene cunicularia GCF_003259725.1_athCun1 445 1,157,069,330 33,737 12,642,846 19.37
43 California black rail (168171201 alternate hap 2022) Laterallus jamaicensis coturniculus GCA_022605925.1_bLatJam1.0.a 3,563 1,211,372,722 1,672 167,200 30.43
44 California black rail (168171201 primary hap 2022) Laterallus jamaicensis coturniculus GCA_022605575.1_bLatJam1.0.p 645 1,391,405,863 319 31,910 32.29
45 California condor (v2 813 2022 refseq) Gymnogyps californianus GCF_018139145.2_ASM1813914v2 542 1,240,248,578 632 316,000 20.33
46 California quail (MVZ:Bird:193975 alternate hap 2022) Callipepla californica brunnescens GCA_023055725.1_bCalCai1.0.a 1,601 1,398,480,580 248 24,800 36.96
47 California quail (MVZ:Bird:193975 primary hap 2022) Callipepla californica brunnescens GCA_023055505.1_bCalCai1.0.p 321 1,085,347,722 287 28,700 25.37
48 California towhee (CALT 2023) Melozone crissalis GCF_028551555.1_PUWL_Pcris_2 627 1,412,182,309 0 0 32.92
49 Canada goose (SJ_97 2019) Branta canadensis GCA_006130075.1_GSC_cangoose_1.0 14,079 1,151,349,954 15,389 18,827,118 21.30
50 carmine bee-eater alternate hap pseudohaplotype 2019) Merops nubicus GCA_009819585.1_bMerNub1.alt 3,296 1,122,486,764 0 0 21.54
51 carmine bee-eater (2019) Merops nubicus GCA_009819595.1_bMerNub1.pri 109 1,149,356,202 269 6,055,062 21.59
52 chaffinch (primary hap 2023) Fringilla coelebs GCA_963513975.1_bFriCoe1.1 460 1,209,243,761 573 114,600 28.43
53 chicken (GRCg6a 2018) Gallus gallus GCF_000002315.6_GRCg6a 464 1,065,365,434 952 9,784,466 21.22
54 chicken (Cobb bGalGal5 alternate hap 2022) Gallus gallus GCA_027408205.1_bGalGal5.alt 2,259 911,865,540 4 92 21.83
55 chicken (Cobb bGalGal5 primary hap 2022) Gallus gallus GCA_027408225.1_bGalGal5.pri 252 1,109,044,877 460 2,157,079 24.72
56 chicken (Huxu 2023) Gallus gallus GCA_024206055.2_ASM2420605v2 41 1,100,928,095 14 5,572 23.58
57 chicken (Ross bGalGal4 alternate hap 2022) Gallus gallus GCA_027408255.1_bGalGal4.alt 2,683 885,772,923 1 13 21.48
58 chicken (Ross bGalGal4 primary hap 2023) Gallus gallus GCA_027557775.1_bGalGal4.pri 246 1,094,281,734 566 2,821,884 24.04
59 chicken white leghorn layer X broiler (leghorn haplotype v2 2021) Gallus gallus GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w 276 1,050,511,239 409 4,496,311 20.97
60 chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021) Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b 214 1,053,332,251 463 3,383,918 21.35
61 Chilean tinamou Nothoprocta perdicaria GCF_003342845.1_notPer1 2,217 965,904,370 1,226,739 13,445,596 19.59
62 chimney swift (M959 v1.1 2014) Chaetura pelagica GCF_000747805.2_ChaPel_1.1 18,703 1,118,724,105 65,471 44,958,635 19.72
63 chuck-will's-widow (BGI_N321 v2 2014) Antrostomus carolinensis GCF_000700745.2_ASM70074v2 68,881 1,118,829,799 56,333 4,349,714 20.50
64 collared flycatcher Ficedula albicollis GCF_000247815.1_FicAlb1.5 21,428 1,118,343,587 11,403 16,019,705 23.69
65 common canary (domestic yellow sc_yellow_7_cibi 2019) Serinus canaria GCF_007115625.1_cibio_Scana_2019 3,536 1,071,655,231 47,138 19,392,432 19.62
66 common canary (serCan28SL12 2022) Serinus canaria GCF_022539315.1_serCan2020 685 1,050,352,878 1,055 527,001 20.52
67 common cuckoo (bCucCan1 alternate hap 2021) Cuculus canorus GCA_017976305.1_bCucCan1.alt 1,004 1,063,845,602 8 1,739 21.42
68 common cuckoo (bCucCan1 primary hap 2021 refseq) Cuculus canorus GCF_017976375.1_bCucCan1.pri 150 1,180,136,575 296 4,922,315 21.81
69 common mallard (Pekin duck 2017) Anas platyrhynchos platyrhynchos GCA_002743455.1_CAU_duck1.0 21,240 1,136,415,614 25,623 56,312,069 20.28
70 common myna (bArcTri1 alternate hap 2023) Acridotheres tristis GCA_027559525.1_bAcrTri1.alt 2,221 969,356,965 1 500 25.11
71 common myna (bArcTri1 primary hap 2023) Acridotheres tristis GCA_027559615.1_bAcrTri1.pri 455 1,193,419,045 435 2,422,523 28.14
72 common starling Sturnus vulgaris GCF_001447265.1_Sturnus_vulgaris-1.0 2,361 1,036,755,994 23,392 23,939,528 19.54
73 common swift (bApuApu2 alternate hap 2021) Apus apus GCA_020740585.1_bApuApu2.alt.cur 1,697 1,019,504,970 5 105 20.89
74 common swift (bApuApu2 primary hap 2021 refseq) Apus apus GCF_020740795.1_bApuApu2.pri.cur 110 1,100,378,261 256 1,747,529 21.21
75 common tern (alternate hap 2019) Sterna hirundo GCA_009819645.1_bSteHir1.alt 2,235 1,175,438,911 0 0 20.72
76 common tern (2019) Sterna hirundo GCA_009819605.1_bSteHir1.pri 123 1,229,972,541 205 10,364,610 21.00
77 common yellowthroat (alternate hap 2019) Geothlypis trichas GCA_009764545.1_bGeoTri1.alt 4,976 976,433,058 1 32 19.80
78 common yellowthroat (2019) Geothlypis trichas GCA_009764595.1_bGeoTri1.pri 278 1,078,128,490 1,479 13,697,790 20.48
79 crested ibis (BGI_Y956 2014) Nipponia nippon GCF_000708225.1_ASM70822v1 59,555 1,223,863,029 70,475 34,415,453 18.70
80 cuckoo roller (BGI_N330 2014) Leptosomus discolor GCF_000691785.1_ASM69178v1 57,160 1,136,244,952 56,010 3,108,826 18.48
81 cuckoo roller (hap1 2023) Leptosomus discolor GCA_034619455.1_bLepDis1.hap1 335 1,327,905,210 290 58,000 24.00
82 cuckoo roller (hap2 2023) Leptosomus discolor GCA_034619465.1_bLepDis1.hap2 278 1,332,047,658 271 54,200 25.12
83 Dalmatian pelican (BGI_N334 2014) Pelecanus crispus GCF_000687375.1_ASM68737v1 63,982 1,160,924,693 57,580 4,215,933 19.54
84 Dalmatian pelican (alternate hap 2023) Pelecanus crispus GCA_030449815.1_bPelCri1.alt 7,284 1,207,417,857 0 0 23.23
85 Dalmatian pelican (primary hap 2023) Pelecanus crispus GCA_030463565.1_bPelCri1.pri 311 1,314,587,946 390 78,000 24.65
86 Downy woodpecker (alternate hap 2020) Dryobates pubescens GCA_014839825.1_bDryPub1.alt 1,342 1,082,594,729 4 226 31.30
87 Downy woodpecker (primary hap 2020) Dryobates pubescens GCF_014839835.1_bDryPub1.pri 180 1,187,939,694 187 4,003,130 32.06
88 East African grey crowned-crane Balearica regulorum gibbericeps GCF_000709895.1_ASM70989v1 53,491 1,127,622,302 58,359 4,094,603 18.87
89 East African grey crowned-crane (alternate hap 2020) Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt 971 1,042,364,165 4 539 20.18
90 East African grey crowned-crane (bBalReg1 2020) Balearica regulorum gibbericeps GCA_011004875.1_bBalReg1.pri 105 1,221,051,782 144 4,796,037 21.20
91 Eastern black-eared wheatear (GR-GAL-2019-014 2023) Oenanthe melanoleuca GCF_029582105.1_OMel1.0 587 1,036,256,795 582 58,200 20.82
92 emperor penguin Aptenodytes forsteri GCF_000699145.1_ASM69914v1 10,672 1,254,347,440 72,501 71,806,784 17.97
93 emu (v2 ZJU1.0 2023) Dromaius novaehollandiae GCA_016128335.2_ZJU2.0 767 1,247,435,561 539 72,443 19.18
94 emu (2018) Dromaius novaehollandiae GCF_003342905.1_droNov1 2,778 1,192,254,075 1,408,082 13,197,674 17.61
95 Eurasian nightjar (alternate hap 2021) Caprimulgus europaeus GCA_907165095.1_bCapEur3.1_alternate_haplotype 2,502 1,051,868,380 25 3,300 21.18
96 Eurasian nightjar (primary hap 2021) Caprimulgus europaeus GCA_907165065.1_bCapEur3.1 121 1,177,791,212 153 25,835 22.20
97 Eurasian tree sparrow Passer montanus GCF_014805655.1_ASM1480565v1 18,975 1,039,966,254 4,765 1,888,875 20.56
98 Eurpoean golden plover (bPluApr1 alternate hap 2021) Pluvialis apricaria GCA_017639475.1_bPluApr1.alt 1,147 1,085,787,090 5 552 20.74
99 European golden plover (bPluApr1 primary hap 2021) Pluvialis apricaria GCA_017639485.1_bPluApr1.pri 107 1,247,767,512 268 12,294,737 21.20
100 European robin (alternate hap 2021) Erithacus rubecula GCA_903797565.2_bEriRub2.2_alternate_haplotype 3,668 912,720,829 18 4,600 19.76
101 European robin (primary hap 2021) Erithacus rubecula GCA_903797595.2_bEriRub2.2 1,119 1,086,738,418 990 287,644 21.47
102 European shag (alternate hap 2023) Phalacrocorax aristotelis GCA_949628205.1_bGulAri2.1_alternate_haplotype 9,751 1,080,507,657 1 17 21.58
103 European shag (primary hap 2023) Phalacrocorax aristotelis GCA_949628215.1_bGulAri2.1 353 1,279,134,750 222 44,217 22.81
104 European turtle dove (v1.2 alternate hap 2021) Streptopelia turtur GCA_901699165.2_bStrTur1.2_alternate_haplotype 3,334 1,035,330,184 0 0 20.26
105 European turtle dove (v1.2 2021) Streptopelia turtur GCA_901699155.2_bStrTur1.2 311 1,178,816,852 940 3,880,574 21.07
106 garden warbler (bSylBor1 alternate hap 2020) Sylvia borin GCA_014839765.1_bSylBor1.alt 775 1,032,649,170 0 0 19.91
107 garden warbler (bSylBor1 primary hap 2020) Sylvia borin GCA_014839755.1_bSylBor1.pri 176 1,045,652,180 134 1,835,448 20.28
108 golden-collared manakin Manacus vitellinus GCF_001715985.3_ASM171598v3 3,619 1,072,328,541 20,874 27,517,864 18.53
109 golden eagle (v1.4 alternate hap 2021) Aquila chrysaetos chrysaetos GCA_902153765.2_bAquChr1.4_alternate_haplotype 3,855 792,810,001 2 57 18.35
110 golden eagle (v1.4 2021) Aquila chrysaetos chrysaetos GCF_900496995.4_bAquChr1.4 144 1,233,704,830 228 5,201,260 20.02
111 golden pheasant Chrysolophus pictus GCA_003413605.1_Chrysolophus_pictus_GenomeV1.0 14,294 1,023,990,748 51,170 25,281,723 20.04
112 great cormorant (BGI_N336 2014) Phalacrocorax carbo GCF_000708925.1_ASM70892v1 64,312 1,138,967,842 98,475 8,762,664 18.08
113 great cormorant (primary hap 2024) Phalacrocorax carbo GCA_963921805.1_bPhaCar2.1 351 1,283,643,005 493 98,600 22.67
114 great potoo (bNycGra1 alternate hap 2020) Nyctibius grandis GCA_013368595.1_bNycGra1.alt 1,395 1,041,284,291 14 2,599 22.77
115 great potoo (bNycGra1 primary hap 2020) Nyctibius grandis GCA_013368605.1_bNycGra1.pri 191 1,256,414,880 243 6,139,133 23.97
116 great tit Parus major GCF_001522545.3_Parus_major1.1 1,675 1,020,310,769 24,615 18,002,180 19.16
117 greater honeyguide (239-I01 2023) Indicator indicator GCF_027791375.1_UM_Iind_1.1 896 1,147,325,966 556 55,478 28.36
118 greater prairie chicken Tympanuchus cupido pinnatus GCA_001870855.1_T_cupido_pinnatus_GPC_3440_v1 12,186 983,776,544 48,408 3,857,299 19.91
119 greater rhea Rhea americana GCA_003343005.1_rheAme1 2,162 1,160,836,514 2,075,293 16,267,005 18.71
120 greater sage-grouse Centrocercus urophasianus GCF_019232065.1_USGS_Curo_1.0 1,502 1,010,657,860 9,894 36,988,073 19.67
121 green peafowl Pavo muticus GCA_016647715.1_ASM1664771v1 2,446 1,061,110,005 32,668 19,660,955 20.61
122 grey parrot (MU2MI4XJKV 2020) Psittacus erithacus GCA_009867235.1_ASM986723v1 49,377 1,118,034,822 4,777 376,990 19.43
123 ground parrot (Strahan ANWC-B61680 2023) Pezoporus wallicus GCF_028554395.1_APGP_CSIRO_Pwel_v1 8,090 1,141,458,063 0 0 22.03
124 gyrfalcon (bFalRus1 alternate hap 2020) Falco rusticolus GCA_015220155.1_bFalRus1.alt 8,370 516,243,243 0 0 16.87
125 gyrfalcon (bFalRus1 primary hap 2020) Falco rusticolus GCF_015220075.1_bFalRus1.pri 133 1,195,847,496 635 5,345,814 18.84
126 Harpy eagle (bHarHar1 alternate hap 2022) Harpia harpyja GCA_026419925.1_bHarHar1 5,968 1,185,324,778 1 500 25.31
127 Harpy eagle (primary hap 2022 refseq) Harpia harpyja GCF_026419915.1_bHarHar1_primary_haplotype 322 1,351,447,071 342 2,651,394 24.82
128 Hawaiian crow (bCorHaw1 alternate hap 2021) Corvus hawaiiensis GCA_020740675.1_bCorHaw1.alt.cur 2,762 628,844,469 0 0 20.95
129 Hawaiian crow (bCorHaw1 primary hap 2021 refseq) Corvus hawaiiensis GCF_020740725.1_bCorHaw1.pri.cur 188 1,151,611,379 294 1,813,227 23.63
130 helmeted guineafowl Numida meleagris GCF_002078875.1_NumMel1.0 2,466 1,043,264,150 15,598 20,122,429 20.22
131 hoatzin (BGI_N306 2014) Opisthocomus hoazin GCF_000692075.1_ASM69207v1 10,256 1,203,712,246 99,371 61,546,379 18.74
132 hoatzin (hap1 2023) Opisthocomus hoazin GCA_030867145.1_bOpiHoa1.hap1 415 1,482,459,898 268 53,600 31.68
133 hoatzin (hap2 2023) Opisthocomus hoazin GCA_030867165.1_bOpiHoa1.hap2 323 1,355,639,139 212 42,400 31.88
134 hooded crow (v6 S_Up_H32 2022) Corvus cornix cornix GCF_000738735.6_ASM73873v6 47 1,030,881,721 425 3,256,893 19.03
135 house finch (bHaeMex1 alternate hap 2022) Haemorhous mexicanus GCA_027406555.1_bHaeMex1.alt 1,003 1,039,351,984 1 13 22.74
136 house finch (bHaeMex1 primary hap 2022 refseq) Haemorhous mexicanus GCF_027477595.1_bHaeMex1.pri 184 1,148,233,018 296 11,207,146 23.53
137 house sparrow (hap1 2024) Passer domesticus GCA_036417665.1_bPasDom1.hap1 334 1,310,114,252 202 40,400 30.41
138 House sparrow (hap2 2024) Passer domesticus GCA_036417895.1_bPasDom1.hap2 482 1,260,479,385 182 36,400 31.98
139 Humboldt's penguin (bSphHub1 alternate hap 2022) Spheniscus humboldti GCA_027474345.1_bSphHub1.alt 4,342 1,159,977,626 1 77 24.68
140 Humboldt's penguin (bSphHub1 primary hap 2022) Spheniscus humboldti GCA_027474245.1_bSphHub1.pri 136 1,358,357,718 253 1,055,061 25.75
141 hyacinth macaw (LEKZKR9XQ3 2022) Anodorhynchus hyacinthinus GCA_009936445.2_ASM993644v2 259,731 1,105,970,561 1,098 45,810 20.26
142 jackdaw Coloeus monedula GCA_013407035.1_ASM1340703v1 41 1,035,863,955 511 2,904,377 19.28
143 Japanese quail Coturnix japonica GCF_001577835.2_Coturnix_japonica_2.1 2,012 927,656,957 11,601 10,397,704 19.88
144 kagu (bRhyJub1 alternate hap 2023) Rhynochetos jubatus GCA_027595965.1_bRhyJub1.alt 2,818 791,426,973 1 32 25.70
145 kagu (bRhyJub1 primary hap 2023) Rhynochetos jubatus GCA_027574665.1_bRhyJub1.pri 148 1,331,454,348 300 525,241 28.26
146 kakapo (Jane alternate hap 2019) Strigops habroptila GCA_004011185.1_bStrHab1_v1.h 3,728 285,706,558 11 5,465 18.11
147 kakapo (Jane v2 2020 refseq) Strigops habroptila GCF_004027225.2_bStrHab1.2.pri 89 1,148,597,545 373 10,544,081 20.53
148 kea Nestor notabilis GCF_000696875.1_ASM69687v1 42,180 1,053,559,886 51,381 4,379,260 18.08
149 killdeer Charadrius vociferus GCF_000708025.1_ASM70802v2 15,167 1,219,859,583 63,995 33,912,801 19.46
150 lammergeier (bGypBar2 alternate hap 2023) Gypaetus barbatus GCA_028017155.1_bGypBar2.alt 2,892 979,058,826 0 0 23.84
151 lammergeier (bGypBar2 primary hap 2023) Gypaetus barbatus GCA_028022735.1_bGypBar2.pri 232 1,365,299,843 259 2,000,432 26.52
152 lance-tailed manakin (2020) Chiroxiphia lanceolata GCF_009829145.1_bChiLan1.pri 93 1,089,631,598 206 3,303,511 20.07
153 lance-tailed manakin (alternate hap 2020) Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt 4,269 1,054,616,617 0 0 19.51
154 lanner falcon (bFalBia1 alternate hap 2022) Falco biarmicus GCA_023634305.1_bFalBia1.alt 3,090 1,202,443,328 0 0 22.09
155 lanner falcon (bFalBia1 primary hap 2022 refseq) Falco biarmicus GCF_023638135.1_bFalBia1.pri 397 1,285,492,283 158 2,152,808 23.59
156 lesser black-backed gull (primary hap 2024) Larus fuscus GCA_963932225.1_bLarFus1.1 1,367 1,324,286,540 537 107,415 27.18
157 lesser kestrel (alternate hap 2021) Falco naumanni GCA_017639645.1_bFalNau1.mat 551 1,156,765,323 258 11,969,465 19.17
158 lesser kestrel (v2 2021) Falco naumanni GCF_017639655.2_bFalNau1.pat 291 1,215,719,661 298 4,077,287 19.20
159 lesser prairie-chicken (F22 2022) Tympanuchus pallidicinctus GCF_026119805.1_pur_lepc_1.0 206 994,352,574 58 5,800 20.80
160 lesser rhea (bPtePen1 alternate hap 2023) Rhea pennata GCA_028389885.1_bPtePen1.alt 910 983,620,806 0 0 21.55
161 lesser rhea (bPtePen1 primary hap 2023 refseq) Rhea pennata GCF_028389875.1_bPtePen1.pri 180 1,269,016,774 128 1,451,673 22.80
162 lesser rhea (206185 2018) Rhea pennata GCA_003342835.1_rhePen1 3,019 1,168,291,008 1,039,616 16,746,726 19.17
163 little egret Egretta garzetta GCF_000687185.1_ASM68718v1 11,791 1,206,501,934 88,871 48,695,403 19.00
164 long-tailed hermit (PSU5 alternate hap 2022) Phaethornis superciliosus GCA_023637925.1_DD_ASM_B1a 230 1,014,956,223 0 0 20.48
165 long-tailed hermit (PSU5 primary hap 2022) Phaethornis superciliosus GCA_023637945.1_DD_ASM_B1 70 1,020,112,811 141 3,809,484 20.12
166 Macqueen's bustard (BGI_N324 2014) Chlamydotis macqueenii GCF_000695195.1_ASM69519v1 59,693 1,086,566,339 56,130 3,604,992 20.04
167 Macqueen's bustard (maternal 2024) Chlamydotis macqueenii GCA_036417535.1_bChlMac1.mat 329 1,273,933,319 100 20,000 27.09
168 Macqueen's bustard (paternal 2024) Chlamydotis macqueenii GCA_036418225.1_bChlMac1.pat 343 1,106,587,813 84 16,800 25.27
169 maguari stork (bCicMag1 alternate hap 2021) Ciconia maguari GCA_017639665.1_bCicMag1.alt 4,278 967,599,765 5 726 19.61
170 maguari stork (bCicMag1 primary hap 2021) Ciconia maguari GCA_017639555.1_bCicMag1.pri 153 1,239,437,416 232 22,209,791 19.58
171 mallard CAU_Wild1.0 Anas platyrhynchos GCA_008746955.1_CAU_Wild1.0 1,665 1,211,992,756 318 1,235,431 25.07
172 mallard PBH1.5 Anas platyrhynchos GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5 2,150 1,126,176,092 71,703 2,915,825 21.95
173 mallard ZJU1.0 Anas platyrhynchos GCF_015476345.1_ZJU1.0 756 1,188,533,289 905 4,230,438 24.63
174 Mariana crow Corvus kubaryi GCF_017639235.1_C.kubaryi_AGA036_p1.0 1,443 1,057,484,666 10,579 11,229,600 18.96
175 Mauritius kestrel (alternate hap 2023) Falco punctatus GCA_963210275.1_bFalPun1.1_alternate_haplotype 2,259 390,584,314 0 0 22.52
176 Mauritius kestrel (primary hap 2023) Falco punctatus GCA_963210335.1_bFalPun1.1 316 1,279,277,844 407 81,600 22.85
177 Mauritius parakeet (alternate hap 2023) Psittacula echo GCA_963243765.1_bPsiEch3.1_alternate_haplotype 2,130 791,895,490 0 0 24.89
178 Mauritius parakeet (primary hap 2023) Psittacula echo GCA_963264785.1_bPsiEch3.1 172 1,203,831,919 358 71,432 25.22
179 medium ground-finch Geospiza fortis GCF_000277835.1_GeoFor_1.0 27,239 1,065,292,181 68,589 24,006,152 19.54
180 monk parakeet Myiopsitta monachus GCA_017639245.1_MMon_1.0 291 1,168,583,304 352 175,021 22.56
181 mute swan (bCygOlo1 v2 alternate hap 2021) Cygnus olor GCA_009769485.2_bCygOlo1.alt.v2 5,626 814,594,871 14 918 20.18
182 mute swan (bCygOlo1 v2 primary hap 2021) Cygnus olor GCF_009769625.2_bCygOlo1.pri.v2 171 1,134,186,642 451 9,922,725 21.32
183 Nelson's sparrow (bAmmNel1 alternate hap 2023) Ammospiza nelsoni GCA_027579665.1_bAmmNel1.alt 2,834 1,033,298,713 0 0 26.31
184 Nelson's sparrow (bAmmNel1 primary hap 2023 refseq) Ammospiza nelsoni GCF_027579445.1_bAmmNel1.pri 77 1,185,463,352 215 5,092,979 25.88
185 New Caledonian crow (2019) Corvus moneduloides GCF_009650955.1_bCorMon1.pri 105 1,112,734,094 289 28,870,195 19.58
186 New Caledonian crow (alternate hap 2019) Corvus moneduloides GCA_009651025.1_bCorMon1.alt 894 905,198,257 0 0 19.52
187 Nicobar pigeon (hap1 2024) Caloenas nicobarica GCA_036013445.1_bCalNic1.hap1 807 1,285,851,275 117 20,400 28.09
188 Nicobar pigeon (hap2 2024) Caloenas nicobarica GCA_036010745.1_bCalNic1.hap2 226 1,197,404,482 118 20,600 23.25
189 North Island brown kiwi (hap1 2024) Apteryx mantelli GCA_036417845.1_bAptMan1.hap1 409 1,504,415,252 170 34,000 27.67
190 North Island brown kiwi (hap2 2024) Apteryx mantelli GCA_036417975.1_bAptMan1.hap2 349 1,593,539,360 155 31,000 30.47
191 northern bobwhite Colinus virginianus GCA_008692595.2_Cv_LA_2.0 6,035 948,540,911 33,134 9,181,491 19.59
192 northern fulmar Fulmarus glacialis GCF_000690835.1_ASM69083v1 57,389 1,141,395,646 54,825 5,766,974 18.44
193 northern gannet (hap1 2023) Morus bassanus GCA_031468805.1_bMorBas2.hap1 829 1,381,630,140 263 52,600 27.30
194 northern gannet (hap2 2023) Morus bassanus GCA_031468815.1_bMorBas2.hap2 421 1,294,804,326 248 49,600 21.09
195 northern goshawk (bAccGen1 v1 alternate hap 2022) Accipiter gentilis GCA_929447715.1_bAccGen1.1_alternate_haplotype 4,484 1,112,029,929 2 50 24.06
196 northern goshawk (bAccGen1 primary hap v2 2022 genbank) Accipiter gentilis GCA_929443795.2_bAccGen1.2 455 1,398,030,142 183 36,600 27.31
197 northern goshawk (bAccGen1 primary hap v1 2022 refseq) Accipiter gentilis GCF_929443795.1_bAccGen1.1 454 1,398,011,397 183 36,600 27.31
198 northern pintail (primary hap 2024) Anas acuta GCA_963932015.1_bAnaAcu1.1 395 1,189,313,589 631 125,881 25.92
199 Obi paradise-crow (lycPyr6 2020) Lycocorax pyrrhopterus obiensis GCA_014706295.1_ASM1470629v1 1,695 1,107,771,238 1,602 5,759,488 20.21
200 Okarito brown kiwi Apteryx rowi GCF_003343035.1_aptRow1 4,120 1,228,902,913 696,987 19,303,568 18.35
201 Oriental scops-owl (oso-nibr-517 2020) Otus sunia GCA_010365825.1_OtuSun1.0 108,826 1,231,433,939 42,691 19,408,919 19.28
202 peregrine falcon (bFalPer1 alternate hap 2022) Falco peregrinus GCA_023634185.1_bFalPer1.alt 2,745 1,175,509,191 0 0 21.18
203 peregrine falcon (bFalPer1 primary hap 2022 refseq) Falco peregrinus GCF_023634155.1_bFalPer1.pri 125 1,311,598,859 241 4,014,394 24.67
204 peregrine falcon (BGI 2013) Falco peregrinus GCF_000337955.1_F_peregrinus_v1.0 7,021 1,171,973,431 76,069 18,569,083 18.40
205 pin-tailed whydah (BioBank_ID:100142 2022) Vidua macroura GCF_024509145.1_ASM2450914v1 146 1,123,269,635 338 33,800 23.75
206 pink pigeon (alternate hap 2023) Nesoenas mayeri GCA_963082445.1_bNesMay2.1_alternate_haplotype 1,277 867,500,292 0 0 21.65
207 pink pigeon (primary hap 2023) Nesoenas mayeri GCA_963082525.1_bNesMay2.1 143 1,183,271,950 509 101,800 22.92
208 plumbeous ibis (bTheCae1 alternate hap 2021) Theristicus caerulescens GCA_020745805.1_bTheCae1.alt.cur 749 1,041,135,290 4 95 19.61
209 plumbeous ibis (bTheCae1 primary hap 2021) Theristicus caerulescens GCA_020745775.1_bTheCae1.pri.cur 88 1,203,372,763 104 2,268,207 20.10
210 Puerto Rican parrot (LU 182127 2020) Amazona vittata GCA_000332375.2_ASM33237v2 62,712 1,446,649,664 137,572 367,660,255 14.32
211 razorbill (2006_11_07_Graehlm_vinge_78 2019) Alca torda GCA_008658365.1_bAlcTor1_primary 95 1,178,492,568 227 3,561,127 20.12
212 razorbill (alternate hap 2006_11_07_Graehlm_vinge_78 2019) Alca torda GCA_008658355.1_bAlcTor1_alternate 3,309 1,220,378,950 0 0 20.28
213 red-backed fairy wren (Western Australia 2023) Malurus melanocephalus GCF_030028575.1_MMel_1.1 10,634 1,020,684,368 3,337,637 34,751,376 18.48
214 red-crested turaco (2019) Tauraco erythrolophus GCA_009769465.1_bTauEry1.pri 140 1,252,271,553 344 26,400,695 22.20
215 red-crested turaco (alternate hap 2019) Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt 3,476 1,084,112,861 0 0 21.89
216 red-fronted tinkerbird (bPogPus1 alternate hap 2020) Pogoniulus pusillus GCA_015220175.1_bPogPus1.alt 2,748 1,101,771,457 12 2,226 34.66
217 red-fronted tinkerbird (bPogPus1 primary hap 2020) Pogoniulus pusillus GCA_015220805.1_bPogPus1.pri 253 1,272,358,903 307 6,012,757 35.91
218 red-legged partridge Alectoris rufa GCA_019345075.1_ASM1934507v1 10,598 1,027,480,606 18,534 31,309,750 20.20
219 red-legged seriema (2019) Cariama cristata GCA_009819825.1_bCarCri1.pri 110 1,215,245,693 194 4,933,338 19.73
220 red-legged seriema (alternate hap 2019) Cariama cristata GCA_009819485.1_bCarCri1.alt 2,840 930,239,327 1 98 18.92
221 red-throated loon (BGI_N328 2014) Gavia stellata GCF_000690875.1_ASM69087v1 61,831 1,129,694,867 64,882 6,867,421 18.23
222 red-throated loon (hap1 2023) Gavia stellata GCA_030936125.1_bGavSte3.hap1 2,965 1,403,461,371 260 52,000 27.37
223 red-throated loon (hap2 2023 refseq) Gavia stellata GCF_030936135.1_bGavSte3.hap2 1,185 1,321,270,170 249 49,800 23.65
224 red-winged blackbird (BioBank_ID:100140 2023) Agelaius phoeniceus GCF_020745825.1_Agelaius_phoeniceus_1.1 410 1,188,547,179 106 51,600 25.46
225 rhinoceros hornbill Buceros rhinoceros silvestris GCF_000710305.1_ASM71030v1 62,257 1,065,782,791 118,543 17,002,997 17.77
226 rifleman (bAcaChl1 alternate hap 2021) Acanthisitta chloris GCA_016880875.1_bAcaChl1.alt 2,879 827,793,803 20 1,043 19.12
227 rifleman (bAcaChl1 primary hap 2021) Acanthisitta chloris GCA_016904835.1_bAcaChl1.pri 206 1,077,387,582 195 4,215,879 19.97
228 ring-necked pheasant Phasianus colchicus GCF_004143745.1_ASM414374v1 39,678 1,017,524,032 19,995 7,944,423 20.84
229 rock pigeon (Danish tumbler 2013 BGI) Columba livia GCF_000337935.1_Cliv_1.0 14,923 1,107,989,085 85,176 21,063,210 19.45
230 rock pigeon (racing homer maternal 2024) Columba livia GCA_036010775.1_bColLiv1.mat 650 1,181,506,259 192 37,200 28.60
231 rock pigeon (racing homer paternal W 2024) Columba livia GCA_036013475.1_bColLiv1.pat.W 870 1,325,583,211 248 46,800 29.94
232 rock ptarmigan (bLagMut1 alternate hap 2022) Lagopus muta GCA_023344045.1_bLagMut1_alternate 3,212 923,340,374 13 1,320 20.42
233 rock ptarmigan (primary hap 2022 refseq) Lagopus muta GCF_023343835.1_bLagMut1_primary 165 1,026,771,810 210 71,937 21.77
234 ruddy duck Oxyura jamaicensis GCF_011077185.1_BPBGC_Ojam_1.0 9,589 1,147,585,764 18,437 31,354,528 21.19
235 ruff Calidris pugnax GCF_001431845.1_ASM143184v1 3,753 1,229,094,286 30,404 46,140,523 20.49
236 rufous-necked snowfinch Pyrgilauda ruficollis GCF_017590135.1_ASM1759013v1 24,055 1,045,984,361 5,524 2,111,605 19.91
237 rusty-margined flycatcher (MyiCay16 2022) Myiozetetes cayanensis GCF_022539395.1_myiCay2020 1,692 1,075,628,138 181 1,370,356 20.32
238 saffron-crested tyrant-manakin Neopelma chrysocephalum GCF_003984885.1_ASM398488v2 38,089 1,139,224,170 15,342 11,277,790 20.91
239 sage sparrow (canescens MVZ Bird 192114 alternate hap 2022) Artemisiospiza belli GCA_021966175.1_bArtBel1.0.a 43,035 2,257,281,749 12 1,212 43.91
240 sage sparrow (canescens MVZ Bird 192114 primary hap 2022) Artemisiospiza belli GCA_021963965.1_bArtBel1.0.p 1,339 1,401,818,823 200 20,046 36.19
241 Saker falcon (bFalChe1 alternate hap 2022) Falco cherrug GCA_023634115.1_bFalChe1.alt 4,160 1,210,282,093 2 51 23.62
242 Saker falcon (bFalChe1 primary hap 2022 refseq) Falco cherrug GCF_023634085.1_bFalChe1.pri 283 1,309,385,023 258 3,961,655 24.96
243 Saker falcon (BGI 2013) Falco cherrug GCF_000337975.1_F_cherrug_v1.0 5,863 1,174,811,715 70,035 23,817,946 18.25
244 saltmarsh sparrow (bAmmCau1 alternate hap 2023) Ammospiza caudacuta GCA_027887135.1_bAmmCau1.alt 3,054 1,166,743,317 0 0 26.27
245 saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq) Ammospiza caudacuta GCF_027887145.1_bAmmCau1.pri 282 1,241,209,685 363 2,919,107 29.04
246 Savannah sparrow (FMNH 499929 alternate hap 2022) Passerculus sandwichensis alaudinus GCA_022578375.1_bPasSan1.0.a 29,743 1,785,383,892 1,822 182,214 28.02
247 Savannah sparrow (primary hap 2023) Passerculus sandwichensis GCA_031885435.1_bPasSan2.pri 110 1,270,940,266 249 2,812,735 27.00
248 Savannah sparrow (FMNH 499929 primary hap 2022) Passerculus sandwichensis alaudinus GCA_022577445.1_bPasSan1.0.p 337 1,152,292,115 339 33,925 24.47
249 seaside sparrow (bAmmMar1 primary hap 2024) Ammospiza maritima maritima GCA_036010785.1_bAmmMar1.pri 501 1,397,856,043 365 2,055,583 34.58
250 small tree finch (2019) Camarhynchus parvulus GCF_901933205.1_STF_HiC 1,345 1,051,609,828 185 92,500 22.09
251 small tree finch (2020) Camarhynchus parvulus GCA_902806625.1_Camarhynchus_parvulus_V1.1 1,756 1,064,016,364 224 112,000 22.28
252 song sparrow (gouldii PMB2087b alternate hap 2022) Melospiza melodia GCA_022749775.1_bMelMel1.0.a 34,688 1,938,102,026 5 505 40.27
253 song sparrow (primary hap 2024) Melospiza melodia melodia GCA_035770615.1_bMelMel2.pri 354 1,541,261,971 299 1,079,098 39.28
254 song sparrow (gouldii PMB2087b primary hap 2022) Melospiza melodia GCA_022749695.1_bMelMel1.0.p 501 1,356,304,709 323 32,321 34.69
255 South Island takahe (alternate 2021) Porphyrio hochstetteri GCA_020801775.1_bPorHoc1.pat.decon 178 1,245,128,614 238 10,404,950 24.85
256 South Island takahe (primary 2021) Porphyrio hochstetteri GCA_020800305.1_bPorHoc1.mat.Z.cur 174 1,270,294,353 327 5,316,249 25.92
257 speckled mousebird (BGI_N325 2014) Colius striatus GCF_000690715.1_ASM69071v1 70,188 1,075,931,597 44,462 3,761,058 19.44
258 speckled mousebird (hap1 2023) Colius striatus GCA_028858725.1_bColStr4.hap1 189 1,123,441,015 143 5,827,944 23.45
259 speckled mousebird (hap2 2023) Colius striatus GCA_028858625.1_bColStr4.hap2 243 1,242,527,572 151 5,489,805 25.54
260 steelblue widowfinch (purged dups hap OUT-0048 2022) Vidua chalybeata GCA_026979555.1_bVidCha1_purged_dups_haplotype 1,939 154,870,056 0 0 34.87
261 steelblue widowfinch (merged hap OUT-0048 2022) Vidua chalybeata GCA_026979565.1_bVidCha1_merged_haplotype 178 1,080,457,469 458 165,531 20.96
262 Steller's jay (frontalis alternate hap 2022) Cyanocitta stelleri GCA_026168045.1_bCyaSte1.0.a 957 1,177,494,911 200 20,000 27.12
263 Steller's jay (frontalis primary hap 2022) Cyanocitta stelleri GCA_026167965.1_bCyaSte1.0.p 352 1,162,964,953 223 22,300 23.69
264 sun parakeet (2019) Aratinga solstitialis GCA_902168055.1_ARATINGA-SOLSTITIALIS-ASSEMBLY-PRJEB33153 1,570 1,169,445,099 578,921 36,076,735 21.17
265 sunbittern Eurypyga helias GCF_000690775.1_ASM69077v1 62,699 1,088,019,637 52,471 4,990,991 18.84
266 Suruca trogon (bTroSur1 alternate hap 2021) Trogon surrucura GCA_020746095.1_bTroSur1.alt.cur 1,535 997,329,498 17 496 21.93
267 Suruca trogon (bRtoSur1 primary hap 2021) Trogon surrucura GCA_020746105.1_bTroSur1.pri.cur 182 1,165,749,515 253 10,270,755 22.51
268 Swainson's thrush (bCatUst1 v2 alternate hap 2020) Catharus ustulatus GCA_009819505.2_bCatUst1.alt.v2 3,601 1,128,658,440 13 343 22.74
269 Swainson's thrush (bCatUst1 v2 primary hap 2020) Catharus ustulatus GCF_009819885.2_bCatUst1.pri.v2 160 1,131,616,530 429 12,903,695 22.52
270 swamp sparrow (bMelGeo1 alternate hap 2023) Melospiza georgiana GCA_028019105.1_bMelGeo1.alt 862 1,075,048,352 0 0 25.04
271 swamp sparrow (bMelGeo1 primary hap 2023 refseq) Melospiza georgiana GCF_028018845.1_bMelGeo1.pri 40 1,162,015,399 236 1,233,091 24.53
272 swan goose (Sichuan white goose 2017) Anser cygnoides GCF_002166845.1_GooseV1.0 1,802 1,130,293,421 63,061 29,604,614 19.74
273 swan goose (Tianfu 2020) Anser cygnoides GCA_013030995.1_ASM1303099v1 2,119 1,113,895,350 716 71,600 21.22
274 swan goose (Zhedong 2015) Anser cygnoides domesticus GCF_000971095.1_AnsCyg_PRJNA183603_v1.0 7,593 1,119,151,626 84,351 35,379,405 19.45
275 tawny frogmouth (bPodStr1 alternate hap 2023) Podargus strigoides GCA_028020675.1_bPodStr1.alt 911 977,391,185 1 35 22.09
276 tawny frogmouth (bPodStr1 primary hap 2023) Podargus strigoides GCA_028020825.1_bPodStr1.pri 1,038 1,271,141,449 203 2,167,278 27.67
277 tawny owl (hap1 2023) Strix aluco GCA_031877795.1_bStrAlu1.hap1 203 1,414,802,443 281 4,312,653 27.44
278 tawny owl (hap2 2023) Strix aluco GCA_031877785.1_bStrAlu1.hap2 184 1,219,048,950 206 1,471,991 24.84
279 Tibetan ground-tit Pseudopodoces humilis GCF_000331425.1_PseHum1.0 5,406 1,042,997,632 21,646 12,967,196 19.96
280 tourmaline sunangel (hap1 2024) Heliangelus exortis GCA_036169615.1_bHelExo1.hap1 131 1,049,650,714 437 85,400 21.23
281 tourmaline sunangel (hap2 2024) Heliangelus exortis GCA_036172335.1_bHelExo1.hap2 200 969,853,240 370 72,600 21.82
282 tricolored blackbird (1412-34295 alternate hap 2022) Agelaius tricolor GCA_023055385.1_bAgeTri1.0.a 450 1,142,379,013 97 9,700 25.05
283 tricolored blackbird (1412-34295 primary hap 2022) Agelaius tricolor GCA_023055355.1_bAgeTri1.0.p 214 1,157,608,456 97 9,700 23.38
284 tufted duck (alternate hap 2019) Aythya fuligula GCA_009819845.1_bAytFul2.alt 780 1,013,629,683 1 100 21.73
285 tufted duck (2019) Aythya fuligula GCF_009819795.1_bAytFul2.pri 105 1,127,004,725 163 9,417,397 22.39
286 turkey (Aviagen NT-WF06-2002-E0010 2014) Meleagris gallopavo GCF_000146605.3_Turkey_5.1 185,175 1,115,474,681 65,045 35,294,427 21.11
287 turkey (WU_HG_1 2021) Meleagris gallopavo GCA_905368555.1_MGAL_WU_HG_1.0 151 1,001,818,376 81 11,546 21.07
288 village indigobird (OUT-0048 2022) Vidua chalybeata GCF_026979565.1_bVidCha1_merged_haplotype 177 1,080,440,577 458 165,531 20.96
289 Virginia rail (171378401 alternate hap 2022) Rallus limicola GCA_022605895.1_bRalLim1.0.a 4,450 1,425,697,905 668 66,800 32.20
290 Virginia rail (171378401 primary hap 2022) Rallus limicola GCA_022605955.1_bRalLim1.0.p 1,102 1,395,598,026 197 19,704 32.38
291 western capercaillie (alternate hap 2023) Tetrao urogallus GCA_951394355.1_bTetUro1.1_alternate_haplotype 5,463 853,758,599 0 0 20.30
292 western capercaillie (primary hap 2023) Tetrao urogallus GCA_951394365.1_bTetUro1.1 318 1,013,184,029 973 194,600 21.16
293 western scrub-jay (CA MVZ Bird 193978 2023) Aphelocoma californica GCA_028536645.1_bAphCal1.0.hap2 1,631 1,191,279,315 168 16,800 27.56
294 western scrub-jay (CA MVZ Bird 193978 2023) Aphelocoma californica GCA_028536675.1_bAphCal1.0.hap1 1,393 1,348,500,425 272 27,200 32.03
295 whiskered treeswift (bHemCom1 alternate hap 2021) Hemiprocne comata GCA_020745695.1_bHemCom1.alt.cur 2,405 1,052,608,110 1 13 20.56
296 whiskered treeswift (bHemCor1 primary hap 2021) Hemiprocne comata GCA_020745705.1_bHemCom1.pri.cur 146 1,164,813,063 218 10,174,467 21.46
297 white wagtail Motacilla alba alba GCF_015832195.1_Motacilla_alba_V1.0_pri 619 1,072,670,728 906 903,500 22.46
298 white-collared manakin (Guabito, Panama 608988 2022) Manacus candei GCF_025592945.1_ASM2559294v1 643 1,121,284,527 0 0 21.52
299 white-crowned manakin (hap1 2024) Pseudopipra pipra GCA_036250125.1_bDixPip1.hap1 697 1,165,219,370 323 64,600 21.92
300 white-crowned manakin (hap2 2024) Pseudopipra pipra GCA_036250135.1_bDixPip1.hap2 595 1,027,640,383 307 61,400 21.40
301 white-ruffed manakin Corapipo altera GCF_003945725.1_ASM394572v1 9,068 1,095,745,976 13,527 8,367,350 19.82
302 white-rumped snowfinch Onychostruthus taczanowskii GCF_017590055.1_ASM1759005v1 11,576 1,033,733,724 4,869 1,970,431 20.31
303 white-tailed eagle (BGI_N329 2014) Haliaeetus albicilla GCF_000691405.1_ASM69140v1 50,905 1,133,549,865 60,579 5,093,567 18.15
304 white-tailed eagle (bHalAlb1.1 2022) Haliaeetus albicilla GCA_947461875.1_bHalAlb1.1 188 1,320,298,205 424 84,800 23.68
305 white-tailed eagle (bHalAlb1.1 alternate hap 2022) Haliaeetus albicilla GCA_947461935.1_bHalAlb1.1_alternate_haplotype 4,971 693,161,704 0 0 22.93
306 white-tailed ptarmigan Lagopus leucura GCF_019238085.1_USGS_WTPT01 7,343 1,016,020,572 10,501 24,149,164 20.12
307 white-tailed tropicbird Phaethon lepturus GCF_000687285.1_ASM68728v1 66,785 1,152,958,507 65,286 5,878,041 19.61
308 white-throated dipper (primary hap 2023) Cinclus cinclus GCA_963662255.1_bCinCin1.1 278 1,170,855,695 658 131,600 26.63
309 white-throated sparrow Zonotrichia albicollis GCF_000385455.1_Zonotrichia_albicollis-1.0.1 6,018 1,052,600,561 41,460 46,307,051 19.15
310 white-throated tinamou Tinamus guttatus GCF_000705375.1_ASM70537v2 82,514 1,047,056,493 59,853 22,243,067 18.98
311 whooping crane (maternal hap 2023 refseq) Grus americana GCF_028858705.1_bGruAme1.mat 930 1,257,837,975 262 4,676,178 22.13
312 whooping crane (paternal hap 2023) Grus americana GCA_028858595.1_bGruAme1.pat 395 1,200,805,165 586 5,991,895 20.22
313 willow flycatcher Empidonax traillii GCF_003031625.1_ASM303162v1 7,791 1,123,485,537 39,319 52,589,169 18.90
314 wire-tailed manakin (2020) Pipra filicauda GCF_003945595.2_ASM394559v2 1,768 1,081,944,082 758 2,866,801 20.23
315 wrentit (frontalis MVZ Bird 193981 alternate hap 2023) Chamaea fasciata GCA_029207785.1_bChaFas1.0.hap2 1,350 1,194,527,585 342 34,200 25.86
316 wrentit (frontalis MVZ Bird 193981 primary hap 2023) Chamaea fasciata GCA_029207755.1_bChaFas1.0.hap1 1,342 1,194,545,626 353 35,300 25.86
317 yellow warbler (LACM:Birds122168 alternate hap 2022) Setophaga petechia GCA_024372515.1_bSetPet1.0.a 530 1,249,765,916 246 24,600 28.85
318 yellow warbler (LACM:Birds122168 primary hap 2022) Setophaga petechia GCA_024362935.1_bSetPet1.0.p 687 1,222,385,072 284 28,400 26.21
319 yellow-throated sandgrouse (2019) Pterocles gutturalis GCA_009769525.1_bPteGut1.pri 89 1,127,422,757 242 4,303,557 21.19
320 yellow-throated sandgrouse (alternate hap 2019) Pterocles gutturalis GCA_009769505.1_bPteGut1.alt 1,958 1,037,717,354 0 0 20.79
321 zebra finch (Black17 v1.4 alternate hap 2021) Taeniopygia guttata GCA_003957525.2_bTaeGut1.4.alt 1,646 887,567,949 10 876 20.75
322 zebra finch (Blue55 v1.4 primary hap 2021) Taeniopygia guttata GCF_003957565.2_bTaeGut1.4.pri 199 1,056,271,262 352 3,634,788 20.99
323 zebra finch (Blue55 2020) Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 541 1,106,297,559 789 21,820,589 20.08
324 zebra finch (alternate hap Black17 2018) Taeniopygia guttata GCA_003957525.1_bTaeGut1_v1.h 5,336 965,644,423 45 136,365 20.33
325 zebra finch (alternate hap Blue55 v1 2020) Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt 4,677 947,919,714 16 113,756 19.27
326 zebra finch (Blue55 maternal v3 2020) Taeniopygia guttata GCA_008822115.3_bTaeGut2.mat.v3 206 995,952,786 583 15,480,445 20.34
327 zebra finch (Blue55 paternal 2019) Taeniopygia guttata GCA_008822125.1_bTaeGut2pat 202 1,047,569,904 828 20,734,162 20.05
328 zebra finch (Blue55 paternal W 2020) Taeniopygia guttata GCF_008822105.2_bTaeGut2.pat.W.v2 205 1,068,988,106 857 21,568,737 20.18
TOTALS:total assembly count 328 2,775,442 373,952,736,772 21,395,220 3,158,739,004  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 212 assemblies assembly stats track stats
Mammals 513 assemblies assembly stats track stats
Birds 328 assemblies assembly stats track stats
Fishes 358 assemblies assembly stats track stats
other vertebrates 201 assemblies assembly stats track stats
Invertebrates 648 assemblies assembly stats track stats
Plants 253 assemblies assembly stats track stats
Fungi 612 assemblies assembly stats track stats
Viruses 265 assemblies assembly stats track stats
Bacteria 75 assemblies assembly stats track stats
legacy/superseded 437 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 798 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats