VGP - Vertebrate Genomes Project assembly hub

VGP logo

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of legacy/superseded assemblies)

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser[IGV browser]		 scientific name
and data download		 NCBI assembly BioSample BioProject assembly date,
source link		 class
VGP link
1 African grass rat (paternal X 2020 refseq)[IGV] Arvicanthis niloticus GCF_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27 mammals
2 African grass rat (v1 paternal X 2020 genbank)[IGV] Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27 mammals
3 African savanna elephant (hap2 2023 genbank)[IGV] Loxodonta africana GCA_030014295.1_mLoxAfr1.hap2 SAMN32756554 PRJNA924322 2023-05-16 mammals
4 Andian cavefish (hap1 2023 genbank)[IGV] Trichomycterus rosablanca GCA_030014385.1_fTriRos1.hap1 SAMN32755940 PRJNA924296 2023-05-16 fish
5 Anna's hummingbird (BGI_N300 2019 genbank)[IGV] Calypte anna GCA_003957555.2_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16 birds
6 Arabian camel (paternal hap 2024 genbank)[IGV] Camelus dromedarius GCA_036321535.1_mCamDro1.pat SAMN39296380 PRJNA1064426 2024-01-31 mammals
7 Atlantic bluefin tuna (primary hap 2024 genbank)[IGV] Thunnus thynnus GCA_963924715.1_fThuThy2.1 SAMEA111406335 PRJEB72088 2024-01-29 fish
8 Atlantic halibut (primary hap 2019 genbank)[IGV] Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31 fish
9 Atlantic mackerel (primary hap 2023 genbank)[IGV] Scomber scombrus GCA_963691925.1_fScoSco1.1 SAMEA110450232 PRJEB70589 2023-12-07 fish
10 Atlantic stingray (hap1 2023 genbank)[IGV] Hypanus sabinus GCA_030144855.1_sHypSab1.hap1 SAMN32745077 PRJNA924072 2023-06-05 sharks
11 ballan wrasse (primary hap 2024 genbank)[IGV] Labrus bergylta GCA_963930695.1_fLabBer1.1 SAMEA111562158 PRJEB72177 2024-01-31 fish
12 band-tailed pigeon (v1 hap2 2024 genbank)[IGV] Patagioenas fasciata GCA_036971685.1_bPatFas1.hap2 SAMN40018840 PRJNA1078808 2024-03-06 birds
13 barn swallow (v2 primary hap 2021 refseq)[IGV] Hirundo rustica GCF_015227805.1_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02 birds
14 barn swallow (v3 primary hap 2021 genbank)[IGV] Hirundo rustica GCA_015227805.3_bHirRus1.pri.v3 SAMN14675488 PRJNA636192 2021-11-30 birds
15 black rhinoceros (primary hap 2021 genbank)[IGV] Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur SAMN22047685 PRJNA773944 2021-11-10 mammals
16 black-headed gull (primary hap 2024 genbank)[IGV] Chroicocephalus ridibundus GCA_963924245.1_bChrRid1.1 SAMEA112468038 PRJEB71951 2024-01-20 birds
17 black-legged kittiwake (bRisTri1.patW 2023 genbank)[IGV] Rissa tridactyla GCA_028500815.1_bRisTri1.patW.cur.20221130 SAMN32104255 PRJNA909853 2023-02-09 birds
18 blackcap (primary hap 2019 genbank)[IGV] Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri SAMN12369542 PRJNA558064 2019-12-31 birds
19 Blainville's beaked whale (primary hap 2022 genbank)[IGV] Mesoplodon densirostris GCA_025265405.1_mMesDen1_primary_haplotype SAMN29828597 PRJNA873668 2022-09-19 mammals
20 blue whale (alternate hap JJ_BM4_2016_0621 2019)[IGV] Balaenoptera musculus GCA_008658375.1_mBalMus1_alternate SAMN12287136 PRJNA554523 2019-09-23 mammals
21 blue whale (JJ_BM4_2016_0621 v2 2020)[IGV] Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 SAMN12287136 PRJNA554522 2020-02-03 mammals
22 blunt-snouted clingfish (v1 2019 genbank)[IGV] Gouania willdenowi GCA_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
23 blunt-snouted clingfish (v1 2019 refseq)[IGV] Gouania willdenowi GCF_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
24 Bornean orangutan (v1 AG05252 alternate hap 2023 genbank)[IGV] Pongo pygmaeus GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt SAMN10521809 PRJNA916740 2023-02-28 primates
25 Bornean orangutan (v1 AG05252 primary hap 2023 refseq)[IGV] Pongo pygmaeus GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri SAMN10521809 PRJNA916742 2023-02-28 primates
26 bowfin (hap1 2024 genbank)[IGV] Amia calva GCA_036373705.1_fAmiCal2.hap1 SAMN39643085 PRJNA1070663 2024-02-06 fish
27 brown anole (maternal hap 2024 genbank)[IGV] Anolis sagrei GCA_037176765.1_rAnoSag1.mat SAMN40144551 PRJNA1080665 2024-03-15 reptiles
28 budgerigar (maternal Z 2020 genbank)[IGV] Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z SAMN12623090 PRJNA612327 2020-04-13 birds
29 California sea lion (alternate hap 2019)[IGV] Zalophus californianus GCA_009762295.1_mZalCal1.alt SAMN12368149 PRJNA559674 2019-12-17 mammals
30 California sea lion (v1 2019)[IGV] Zalophus californianus GCA_009762305.1_mZalCal1.pri SAMN12368149 PRJNA559673 2019-12-18 mammals
31 Canada lynx (alternate hap LIC74 2019)[IGV] Lynx canadensis GCA_007474575.1_mLynCan4_v1.alt SAMN09948483 PRJNA489108 2019-07-25 mammals
32 Canada lynx (LIC74 v1 2019)[IGV] Lynx canadensis GCF_007474595.1_mLynCan4_v1.p SAMN09948483 PRJNA489107 2019-07-26 mammals
33 channel bull blenny (2019 genbank)[IGV] Cottoperca gobio GCA_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06 fish
34 chimpanzee (v1 AG18354 alternate hap 2023 genbank)[IGV] Pan troglodytes GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt SAMN30216104 PRJNA916737 2023-02-27 primates
35 chimpanzee (v1 AG18354 primary hap 2023 refseq)[IGV] Pan troglodytes GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri SAMN30216104 PRJNA916736 2023-02-27 primates
36 climbing perch (v1.2 2018 genbank)[IGV] Anabas testudineus GCA_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
37 climbing perch (v1.2 2018 refseq)[IGV] Anabas testudineus GCF_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
38 common bottlenose dolphin (maternal Y genbank 2020)[IGV] Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2020-03-27 mammals
39 common brushtail (genbank 2020)[IGV] Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10 mammals
40 common cuckoo (bCucCan1 primary hap 2021 genbank)[IGV] Cuculus canorus GCA_017976375.1_bCucCan1.pri SAMN12629508 PRJNA562015 2021-04-15 birds
41 common spadefoot toad (primary hap 2024 genbank)[IGV] Pelobates fuscus GCA_036172605.1_aPelFus1.pri SAMN39244120 PRJNA1060730 2024-01-26 amphibians
42 common swift (bApuApu2 2021 genbank)[IGV] Apus apus GCA_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04 birds
43 common vampire bat (v1 HL8 primary hap 2022 genbank)[IGV] Desmodus rotundus GCA_022682495.1_HLdesRot8A SAMN24116476 PRJNA789528 2022-03-24 mammals
44 common vampire bat (v1 HL8 primary hap 2022 refseq)[IGV] Desmodus rotundus GCF_022682495.1_HLdesRot8A SAMN24116476 PRJNA789528 2022-03-24 mammals
45 corroboree frog (hap2 2023 genbank)[IGV] Pseudophryne corroboree GCA_028390025.1_aPseCor3.hap2 SAMN32631236 PRJNA921726 2023-02-06 amphibians
46 denticle herring (v1 2019)[IGV] Denticeps clupeoides GCF_900700375.1_fDenClu1.1 SAMEA104129917 PRJEB31545 2019-03-16 fish
47 downy woodpecker (bDryPub1 primary hap 2020)[IGV] Dryobates pubescens GCA_014839835.1_bDryPub1.pri SAMN12629497 PRJNA561991 2020-10-02 birds
48 eastern happy (v2 2018)[IGV] Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 SAMEA104026430 PRJEB24325 2018-05-30 fish
49 emu (v1 ZJU1.0 2020)[IGV] Dromaius novaehollandiae GCA_016128335.1_ZJU1.0 SAMN15183959 PRJNA638233 2020-12-20 birds
50 epaulette shark (2021 genbank)[IGV] Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. SAMN22550098 PRJNA774310 2021-11-05 sharks
51 Eurasian red squirrel (v1.1 2019)[IGV] Sciurus vulgaris GCA_902686455.1_mSciVul1.1 SAMEA994733 PRJEB35380 2019-11-26 mammals
52 Eurasian water vole (v1 2020)[IGV] Arvicola amphibius GCF_903992535.1_mArvAmp1.1 SAMEA994740 PRJEB39550 2020-08-06 mammals
53 European flounder (primary hap 2023 genbank)[IGV] Platichthys flesus GCA_949316205.1_fPlaFle2.1 SAMEA110026475 PRJEB60141 2023-04-05 fish
54 European pond turtle (hap1 2023 genbank)[IGV] Emys orbicularis GCA_028017835.1_rEmyOrb1.hap1 SAMN31805221 PRJNA919152 2023-01-30 reptiles
55 European smelt (primary hap 2023 genbank)[IGV] Osmerus eperlanus GCA_963692335.1_fOsmEpe2.1 SAMEA14448128 PRJEB70540 2023-12-11 fish
56 European turtle dove (v1.1 alternate hap 2019)[IGV] Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype SAMEA994735 PRJEB32725 2019-06-02 birds
57 European turtle dove (v1.1 primary hap 2019)[IGV] Streptopelia turtur GCA_901699155.1_bStrTur1.1 SAMEA994735 PRJEB32724 2019-06-05 birds
58 European woodmouse (2022 genbank)[IGV] Apodemus sylvaticus GCA_947179515.1_mApoSyl1.1 SAMEA7702024 PRJEB56948 2022-10-28 mammals
59 false killer whale (hap1 2024 genbank)[IGV] Pseudorca crassidens GCA_039906515.1_mPseCra1.hap1 SAMN41253811 PRJNA1108771 2024-05-31 mammals
60 flier cichlid (MPI-CPG 2019 genbank)[IGV] Archocentrus centrarchus GCA_007364275.2_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01 fish
61 Florida worm lizard (hap2 2023 genbank)[IGV] Rhineura floridana GCA_030035675.1_rRhiFlo1.hap2 SAMN34105704 PRJNA953090 2023-05-22 reptiles
62 Gaboon caecilian (v1.1 2019 genbank)[IGV] Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 SAMEA104387963 PRJEB33992 2019-08-18 amphibians
63 gilthead seabream (v1 2019)[IGV] Sparus aurata GCF_900880675.1_fSpaAur1.1 SAMEA104384835 PRJEB31901 2019-07-30 fish
64 golden eagle (v1.2 2019)[IGV] Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 SAMEA994725 PRJEB27699 2019-07-08 birds
65 golden eagle (v1.2 alternate hap 2019)[IGV] Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype SAMEA994725 PRJEB33298 2019-07-08 birds
66 great cormorant (primary hap 2024 genbank)[IGV] Phalacrocorax carbo GCA_963921805.1_bPhaCar2.1 SAMEA8228692 PRJEB71801 2024-02-09 birds
67 great fruit-eating bat (v1 hap1 2024)[IGV] Artibeus lituratus GCA_038363095.1_mArtLit.hap1 SAMN40002247 PRJNA1080658 2024-04-22 mammals
68 great potoo (primary hap 2020 genbank)[IGV] Nyctibius grandis GCA_013368605.1_bNycGra1.pri SAMN12622411 PRJNA562020 2020-06-23 birds
69 greater horseshoe bat (v1 MPI-CBG 2019 genbank)[IGV] Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
70 greater horseshoe bat (v1 MPI-CBG 2019 refseq)[IGV] Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
71 greater pipefish (v1.1 2019)[IGV] Syngnathus acus GCA_901709675.1_fSynAcu1.1 SAMEA104381750 PRJEB32741 2019-05-29 fish
72 greater sac-winged bat (primary hap 2024 genbank)[IGV] Saccopteryx bilineata GCA_036850765.1_mSacBil1_pri_phased_curated SAMN37288508 PRJNA1013202 2024-02-26 mammals
73 green sea turtle (v1 2020)[IGV] Chelonia mydas GCF_015237465.1_rCheMyd1.pri SAMN12612360 PRJNA561941 2020-11-05 reptiles
74 grey whale (primary hap 2023 genbank)[IGV] Eschrichtius robustus GCA_028021215.1_mEscRob2.pri SAMN32629250 PRJNA921702 2023-01-31 mammals
75 harbor porpoise (primary hap 2024 genbank)[IGV] Phocoena phocoena GCA_963924675.1_mPhoPho1.1 SAMEA111380536 PRJEB72090 2024-01-29 mammals
76 hourglass treefrog (paternal 2023 genbank)[IGV] Dendropsophus ebraccatus GCA_027789765.1_aDenEbr1.pat SAMN32145295 PRJNA910819 2023-01-13 amphibians
77 house finch (primary hap 2022 genbank)[IGV] Haemorhous mexicanus GCA_027477595.1_bHaeMex1.pri SAMN28453576 PRJNA839499 2022-12-29 birds
78 house sparrow (hap1 2024 genbank)[IGV] Passer domesticus GCA_036417665.1_bPasDom1.hap1 SAMN39255856 PRJNA1064421 2024-02-07 birds
79 Indian glassy fish (v1 2019)[IGV] Parambassis ranga GCF_900634625.1_fParRan2.1 SAMEA4675621 PRJEB30257 2019-02-06 fish
80 kakapo (Jane v2 2020 genbank)[IGV] Strigops habroptila GCA_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04 birds
81 Korean giant-fin mudskipper (v1 primary hap 2020 genbank)[IGV] Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
82 Korean giant-fin mudskipper (v1 primary hap 2020 refseq)[IGV] Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
83 lanner falcon (bFalBia1 primary hap 2022 genbank)[IGV] Falco biarmicus GCA_023638135.1_bFalBia1.pri SAMN28688289 PRJNA842826 2022-06-02 birds
84 leatherback sea turtle (v1 2019 genbank G10K)[IGV] Dermochelys coriacea GCA_009764565.1_rDerCor1.pri SAMN12629498 PRJNA561993 2019-12-19 reptiles
85 leatherback sea turtle (v1 alternate hap 2019)[IGV] Dermochelys coriacea GCA_009762595.1_rDerCor1.alt SAMN12629498 PRJNA561994 2019-12-18 reptiles
86 leatherback sea turtle (v3 2020 refseq G10K)[IGV] Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 SAMN12629498 PRJNA561993 2020-12-09 reptiles
87 lesser kestrel (v1 2021)[IGV] Falco naumanni GCF_017639655.1_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30 birds
88 lesser rhea (primary hap 2023 genbank)[IGV] Rhea pennata GCA_028389875.1_bPtePen1.pri SAMN32606345 PRJNA918801 2023-02-06 birds
89 lesser sac-winged bat (primary hap 2024 genbank)[IGV] Saccopteryx leptura GCA_036850995.1_mSacLep1_pri_phased_curated SAMN37390139 PRJNA1017170 2024-02-26 mammals
90 lesser salmon catfish (primary hap 2023 genbank)[IGV] Neoarius graeffei GCA_027579695.1_fNeoGra1.pri SAMN28453209 PRJNA839496 2023-01-09 fish
91 live sharksucker (v1 2019)[IGV] Echeneis naucrates GCF_900963305.1_fEcheNa1.1 SAMEA4966390 PRJEB31992 2019-04-11 fish
92 lumpfish (primary hap 2019 genbank)[IGV] Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23 fish
93 mimic poison frog (primary hap 2023 genbank)[IGV] Ranitomeya imitator GCA_032444005.1_aRanImi1.pri SAMN32907850 PRJNA1013386 2023-10-16 amphibians
94 mute swan (bCygOlo1 v1 alternate hap 2019)[IGV] Cygnus olor GCA_009769485.1_bCygOlo1.alt SAMN12621369 PRJNA561961 2019-12-19 birds
95 mute swan (v1 primary hap 2019)[IGV] Cygnus olor GCA_009769625.1_bCygOlo1.pri SAMN12621369 PRJNA561960 2019-12-23 birds
96 Nelson's sparrow (bAmmNel1 primary hap 2023 genbank)[IGV] Ammospiza nelsoni GCA_027579445.1_bAmmNel1.pri SAMN28421656 PRJNA839456 2023-01-09 birds
97 New Zealand spotty (primary hap 2019 genbank)[IGV] Notolabrus celidotus GCA_009762535.1_fNotCel1.pri SAMN12623201 PRJNA561956 2019-12-18 fish
98 Nicobar pigeon (hap1 2024 genbank)[IGV] Caloenas nicobarica GCA_036013445.1_bCalNic1.hap1 SAMN39256628 PRJNA1061158 2024-01-26 birds
99 ninespine stickleback (primary hap 2023 genbank)[IGV] Pungitius pungitius GCA_949316345.1_fPunPun2.1 SAMEA11296545 PRJEB60134 2023-04-08 fish
100 North Atlantic right whale (hap2 2023 genbank)[IGV] Eubalaena glacialis GCA_028564815.1_mEubGla1.hap2 SAMN32746534 PRJNA924128 2023-02-09 mammals
101 North Island brown kiwi (hap1 2024 genbank)[IGV] Apteryx mantelli GCA_036417845.1_bAptMan1.hap1 SAMN39257886 PRJNA1061176 2024-02-06 birds
102 northern pike (primary hap 2020 genbank)[IGV] Esox lucius GCA_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05 fish
103 northern pintail (primary hap 2024 genbank)[IGV] Anas acuta GCA_963932015.1_bAnaAcu1.1 SAMEA112468036 PRJEB72290 2024-02-07 birds
104 pale spear-nosed bat (alternate hap MPI-MPIP 2019)[IGV] Phyllostomus discolor GCA_004115245.1_mPhyDis1_v1.h SAMN09948786 PRJNA489142 2019-01-28 mammals
105 pale spear-nosed bat (MPI-MPIP v1 2019)[IGV] Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p SAMN09948786 PRJNA489141 2019-05-16 mammals
106 Papuan ground boa (hap2 2024 genbank)[IGV] Candoia aspera GCA_035149785.1_rCanAsp1.hap2 SAMN37159891 PRJNA1009782 2024-01-18 reptiles
107 peregrine falcon (bFalPer1 primary hap 2022 genbank)[IGV] Falco peregrinus GCA_023634155.1_bFalPer1.pri SAMN28688290 PRJNA842834 2022-06-02 birds
108 Philippine flying lemur (primary hap 2022 genbank)[IGV] Cynocephalus volans GCA_027409185.1_mCynVol1.pri SAMN32206947 PRJNA911844 2022-12-28 mammals
109 pig-tailed macaque (mMacNem1hap1 2024 genbank)[IGV] Macaca nemestrina GCA_043159975.1_mMacNem.hap1 SAMN41827875 PRJNA1123828 2024-10-15 mammals
110 platypus (Pmale09 v3 2020)[IGV] Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 SAMN08537700 PRJNA489114 2020-04-13 mammals
111 prehistoric monster fish (2019 genbank)[IGV] Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30 fish
112 pygmy chimpanzee (v1 primary hap 2023)[IGV] Pan paniscus GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri SAMN13935689 PRJNA942951 2023-03-20 primates
113 pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank)[IGV] Kogia breviceps GCA_026419965.1_mKogBre1_haplotype_1 SAMN31719513 PRJNA901930 2022-11-27 mammals
114 red-fronted tinkerbird (primary hap 2020 genbank)[IGV] Pogoniulus pusillus GCA_015220805.1_bPogPus1.pri SAMN15098508 PRJNA637953 2020-11-03 birds
115 reedfish (2019)[IGV] Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 SAMEA104026374 PRJEB31579 2019-03-26 fish
116 reedfish (v1 alternate hap 2019)[IGV] Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype SAMEA104026374 PRJEB31582 2019-03-27 fish
117 river trout (v1 2019)[IGV] Salmo trutta GCF_901001165.1_fSalTru1.1 SAMEA994732 PRJEB32115 2019-06-02 fish
118 rock pigeon (v1 racing homer paternal W 2024)[IGV] Columba livia GCA_036013475.1_bColLiv1.pat.W SAMN38891892 PRJNA1054131 2024-01-31 birds
119 rock pigeon (v2 racing homer 2024 genbank)[IGV] Columba livia GCA_036013475.2_bColLiv1.pat.W.v2 SAMN38891892 PRJNA1054131 2024-04-08 birds
120 saddleback dolphin (v1 primary hap 2023 genbank)[IGV] Delphinus delphis GCA_949987515.1_mDelDel1.1 SAMEA111380534 PRJEB61571 2023-05-01 mammals
121 saddleback dolphin (v1 primary hap 2023 refseq)[IGV] Delphinus delphis GCF_949987515.1_mDelDel1.1 SAMEA111380534 PRJEB61571 2023-05-01 mammals
122 Saker falcon (bFalChe1 primary hap 2022 genbank)[IGV] Falco cherrug GCA_023634085.1_bFalChe1.pri SAMN28688204 PRJNA842831 2022-06-02 birds
123 saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank)[IGV] Ammospiza caudacuta GCA_027887145.1_bAmmCau1.pri SAMN28421630 PRJNA839452 2023-01-18 birds
124 San Diego alligator lizard (v1.0 HBS135686 primary hap 2022)[IGV] Elgaria multicarinata webbii GCA_023053635.1_rElgMul1.0.p SAMN25872353 PRJNA810483 2022-04-19 reptiles
125 San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 genbank)[IGV] Elgaria multicarinata webbii GCA_023053635.2_rElgMul1.1.pri SAMN25872353 PRJNA810483 2024-01-04 reptiles
126 sardine (primary hap 2023 genbank)[IGV] Sardina pilchardus GCA_963854185.1_fSarPil1.1 SAMEA111562172 PRJEB71085 2023-12-14 fish
127 sharpnose sevengill shark (hap1 2024 genbank)[IGV] Heptranchias perlo GCF_035084215.1_sHepPer1.hap1 SAMN38891902 PRJNA1054128 2024-01-05 sharks
128 siamang (v1 Jambi primary hap 2023)[IGV] Symphalangus syndactylus GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri SAMN30216103 PRJNA916729 2023-02-28 primates
129 siamang (v2 Jambi primary hap 2024 refseq)[IGV] Symphalangus syndactylus GCF_028878055.2_NHGRI_mSymSyn1-v2.0_pri SAMN30216103 PRJNA916729 2024-01-05 primates
130 Siamese fighting fish (v1 alternate hap 2019)[IGV] Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype SAMEA104381735 PRJEB30366 2019-02-07 fish
131 Siamese fighting fish (v2 primary hap 2019)[IGV] Betta splendens GCF_900634795.2_fBetSpl5.2 SAMEA104381735 PRJEB30365 2019-03-20 fish
132 Siamese fighting fish (v3 primary hap 2020)[IGV] Betta splendens GCF_900634795.3_fBetSpl5.3 SAMEA104381735 PRJEB30365 2020-08-25 fish
133 Skyros wall lizard (v1 hap1 2024)[IGV] Podarcis gaigeae GCA_964106915.1_rPodGai1.hap1.1 SAMEA114217796 PRJEB76108 2024-06-06 reptiles
134 smalltooth sawfish (v2 primary hap 2019 genbank)[IGV] Pristis pectinata GCA_009764475.1_sPriPec2.pri SAMN12629505 PRJNA562009 2019-12-19 sharks
135 song sparrow (primary hap 2024 genbank)[IGV] Melospiza melodia melodia GCA_035770615.1_bMelMel2.pri SAMN35847297 PRJNA1006794 2024-01-24 birds
136 speckled mousebird (hap1 2023 genbank)[IGV] Colius striatus GCA_028858725.1_bColStr4.hap1 SAMN33339572 PRJNA936149 2023-02-24 birds
137 sterlet (v1 paternal hap 2020)[IGV] Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype SAMEA5572864 PRJEB35913 2020-01-08 fish
138 Sumatran orangutan (v1 AG06213 primary hap 2023)[IGV] Pongo abelii GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri SAMN10521808 PRJNA916743 2023-02-28 primates
139 Swainson's thrush (bCatUst1 v1 alternate hap 2019)[IGV] Catharus ustulatus GCA_009819505.1_bCatUst1.alt SAMN12618602 PRJNA561934 2019-12-23 birds
140 Swainson's thrush (v1 primary hap 2019)[IGV] Catharus ustulatus GCF_009819885.1_bCatUst1.pri SAMN12618602 PRJNA561933 2019-12-31 birds
141 swamp sparrow (bMelGeo1 primary hap 2023 genbank)[IGV] Melospiza georgiana GCA_028018845.1_bMelGeo1.pri SAMN22787412 PRJNA915609 2023-01-31 birds
142 thorny skate (v1 CabotCenter1 v1 2020 refseq)[IGV] Amblyraja radiata GCF_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 sharks
143 thorny skate (v1 primary hap CabotCenter1 2020 genbank)[IGV] Amblyraja radiata GCA_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 sharks
144 torafugu (fTakRub1.2 2019 refseq)[IGV] Takifugu rubripes GCF_901000725.2_fTakRub1.2 SAMEA104384834 PRJEB31988 2019-06-05 fish
145 trahira (v1 hap1 2024 refseq)[IGV] Hoplias malabaricus GCF_029633855.1_fHopMal1.hap1 SAMN32740525 PRJNA923842 2024-06-25 fish
146 village indigobird (merged hap OUT-0048 2022 genbank)[IGV] Vidua chalybeata GCA_026979565.1_bVidCha1_merged_haplotype SAMN12254000 PRJNA889055 2022-12-21 birds
147 western European hedgehog (primary hap 2023 genbank)[IGV] Erinaceus europaeus GCA_950295315.1_mEriEur2.1 SAMEA13207416 PRJEB61758 2023-05-01 mammals
148 western lowland gorilla (v1.1 KB3781 2023)[IGV] Gorilla gorilla gorilla GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri SAMN04003007 PRJNA942267 2023-03-20 primates
149 white leghorn X broiler chicken (v1 leghorn haplotype v1 2021)[IGV] Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-01-19 birds
150 white-beaked dolphin (primary hap 2023 genbank)[IGV] Lagenorhynchus albirostris GCA_949774975.1_mLagAlb1.1 SAMEA111380537 PRJEB60994 2023-04-08 mammals
151 white-crowned manakin (hap1 2024 genbank)[IGV] Pseudopipra pipra GCA_036250125.1_bDixPip1.hap1 SAMN32739894 PRJNA1057371 2024-01-31 birds
152 white-tailed eagle (primary hap 2022 genbank)[IGV] Haliaeetus albicilla GCA_947461875.1_bHalAlb1.1 SAMEA12857288 PRJEB57865 2022-12-06 birds
153 white-throated dipper (primary hap 2023 genbank)[IGV] Cinclus cinclus GCA_963662255.1_bCinCin1.1 SAMEA9679959 PRJEB68422 2023-12-11 birds
154 white-tufted-ear marmoset (v1 paternal hap 2020)[IGV] Callithrix jacchus GCA_011100535.1_mCalJac1.pat SAMN12368443 PRJNA558087 2020-03-10 primates
155 zebra finch (alternate hap Black17 2018)[IGV] Taeniopygia guttata GCA_003957525.1_bTaeGut1_v1.h SAMN02981239 PRJNA489099 2018-12-20 birds
156 zebra finch (Blue55 female 2020 genbank)[IGV] Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 SAMN09946140 PRJNA489186 2020-04-01 birds
157 zebra finch (v1 Black17 2019 refseq)[IGV] Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
158 zebra finch (v1 Black17 male 2019 genbank)[IGV] Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
159 zig-zag eel (v1.2 2019 refseq)[IGV] Mastacembelus armatus GCF_900324485.2_fMasArm1.2 SAMEA104026378 PRJEB25769 2019-03-16 fish

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies