This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom5/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

-----------------------------------------------------------
All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                         Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M xenoRefSeqAli.sql 2020-08-19 18:45 2.1K xenoRefGene.txt.gz 2020-08-19 18:32 26M xenoRefGene.sql 2020-08-19 18:32 2.0K xenoRefFlat.txt.gz 2020-08-19 18:32 23M xenoRefFlat.sql 2020-08-19 18:32 1.7K xenoMrna.txt.gz 2020-08-19 18:14 213M xenoMrna.sql 2020-08-19 18:14 2.1K windowmaskerSdust.txt.gz 2009-07-20 16:00 204M windowmaskerSdust.sql 2009-07-20 15:59 1.4K trackDb_pushedout.txt.gz 2023-03-28 13:51 73K trackDb_pushedout.sql 2023-03-28 13:51 2.1K trackDb.txt.gz 2024-01-31 15:13 73K trackDb.sql 2024-01-31 15:13 2.1K tableList.txt.gz 2024-04-14 03:17 7.4K tableList.sql 2024-04-14 03:17 1.6K tableDescriptions.txt.gz 2024-04-13 02:03 9.1K tableDescriptions.sql 2024-04-13 02:03 1.4K tRNAs.txt.gz 2012-04-16 03:06 12K tRNAs.sql 2012-04-16 03:06 1.7K simpleRepeat.txt.gz 2009-07-20 16:05 26M simpleRepeat.sql 2009-07-20 16:05 1.9K rmsk.txt.gz 2009-07-20 16:03 199M rmsk.sql 2009-07-20 16:02 1.9K refSeqAli.txt.gz 2020-08-19 18:45 40K refSeqAli.sql 2020-08-19 18:45 2.1K refGene.txt.gz 2020-08-19 18:28 43K refGene.sql 2020-08-19 18:28 1.9K refFlat.txt.gz 2020-08-19 18:28 38K refFlat.sql 2020-08-19 18:28 1.7K quality.txt.gz 2009-07-20 15:59 64M quality.sql 2009-07-20 15:58 1.7K phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M phastConsElements9way.sql 2010-12-10 11:22 1.5K phastCons9way.txt.gz 2010-12-10 11:03 76M phastCons9way.sql 2010-12-10 11:03 1.9K nscanPep.txt.gz 2009-07-20 16:05 12M nscanPep.sql 2009-07-20 16:05 1.1K nscanGene.txt.gz 2009-07-20 16:02 3.6M nscanGene.sql 2009-07-20 16:02 1.9K netXenTro9.txt.gz 2017-12-14 12:38 7.8M netXenTro9.sql 2017-12-14 12:38 2.1K netXenTro3.txt.gz 2019-06-02 03:26 7.5M netXenTro3.sql 2019-06-02 03:26 2.1K netSusScr2.txt.gz 2010-12-10 11:57 17M netSusScr2.sql 2010-12-10 11:57 2.0K netRn6.txt.gz 2017-03-27 17:27 24M netRn6.sql 2017-03-27 17:27 2.1K netRheMac3.txt.gz 2012-12-02 18:39 21M netRheMac3.sql 2012-12-02 18:39 2.1K netPonAbe2.txt.gz 2010-12-10 11:23 28M netPonAbe2.sql 2010-12-10 11:22 2.3K netPetMar2.txt.gz 2013-01-24 03:47 2.8M netPetMar2.sql 2013-01-24 03:47 2.1K netPanTro3.txt.gz 2011-06-12 11:15 34M netPanTro3.sql 2011-06-12 11:15 2.0K netOviAri1.txt.gz 2011-04-25 10:01 16M netOviAri1.sql 2011-04-25 10:01 2.0K netOryCun2.txt.gz 2010-12-10 11:03 18M netOryCun2.sql 2010-12-10 11:03 2.0K netOrnAna1.txt.gz 2010-12-10 11:56 23M netOrnAna1.sql 2010-12-10 11:56 2.3K netNeoSch1.txt.gz 2020-07-17 10:31 33M netNeoSch1.sql 2020-07-17 10:31 2.1K netMm39.txt.gz 2020-11-25 07:50 15M netMm39.sql 2020-11-25 07:50 2.1K netMm10.txt.gz 2013-10-27 18:44 23M netMm10.sql 2013-10-27 18:43 2.1K netMelGal5.txt.gz 2017-03-20 09:13 8.5M netMelGal5.sql 2017-03-20 09:13 2.1K netMelGal1.txt.gz 2011-11-06 14:42 8.5M netMelGal1.sql 2011-11-06 14:42 2.0K netLoxAfr3.txt.gz 2011-11-21 19:12 22M netLoxAfr3.sql 2011-11-21 19:12 2.0K netHg19.txt.gz 2010-12-10 11:53 34M netHg19.sql 2010-12-10 11:53 2.3K netGalGal3.txt.gz 2010-12-10 11:45 9.3M netGalGal3.sql 2010-12-10 11:45 2.3K netFelCat4.txt.gz 2010-12-10 11:51 18M netFelCat4.sql 2010-12-10 11:51 2.0K netEquCab2.txt.gz 2010-12-10 11:57 28M netEquCab2.sql 2010-12-10 11:57 2.3K netDanRer5.txt.gz 2010-12-10 12:33 8.8M netDanRer5.sql 2010-12-10 12:33 2.3K netCerSim1.txt.gz 2013-01-29 23:26 29M netCerSim1.sql 2013-01-29 23:26 2.1K netCanFam2.txt.gz 2010-12-10 11:48 26M netCanFam2.sql 2010-12-10 11:48 2.3K netCalJac3.txt.gz 2010-12-10 12:30 21M netCalJac3.sql 2010-12-10 12:29 2.0K netBosTau7.txt.gz 2012-06-16 20:26 20M netBosTau7.sql 2012-06-16 20:25 2.0K netAilMel1.txt.gz 2010-12-10 12:33 21M netAilMel1.sql 2010-12-10 12:33 2.0K nestedRepeats.txt.gz 2009-07-20 15:57 23M nestedRepeats.sql 2009-07-20 15:57 1.9K multiz9waySummary.txt.gz 2010-12-10 11:57 33M multiz9waySummary.sql 2010-12-10 11:57 1.6K multiz9wayFrames.txt.gz 2010-12-10 12:25 18M multiz9wayFrames.sql 2010-12-10 12:25 1.8K multiz9way.txt.gz 2010-12-10 11:22 93M multiz9way.sql 2010-12-10 11:22 1.5K mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K mrnaOrientInfo.sql 2020-08-19 18:32 1.8K microsat.txt.gz 2015-08-23 21:56 1.0M microsat.sql 2015-08-23 21:56 1.5K intronEst.txt.gz 2011-04-18 07:19 9.5K intronEst.sql 2011-04-18 07:19 2.0K history.txt.gz 2009-07-20 16:05 3.7K history.sql 2009-07-20 16:05 1.4K hgFindSpec_pushedout.txt.gz 2023-03-28 13:51 1.0K hgFindSpec_pushedout.sql 2023-03-28 13:51 1.8K hgFindSpec.txt.gz 2024-01-31 15:13 1.0K hgFindSpec.sql 2024-01-31 15:13 1.8K grp.txt.gz 2014-03-02 04:14 208 grp.sql 2014-03-02 04:14 1.4K gold.txt.gz 2009-07-20 16:06 1.3M gold.sql 2009-07-20 16:06 1.6K genscanPep.txt.gz 2009-07-20 15:58 7.9M genscanPep.sql 2009-07-20 15:58 1.2K genscan.txt.gz 2009-07-20 15:57 2.3M genscan.sql 2009-07-20 15:57 1.6K gc5Base.txt.gz 2009-07-20 16:02 14M gc5Base.sql 2009-07-20 16:01 1.7K gbLoaded.txt.gz 2020-08-19 18:55 111K gbLoaded.sql 2020-08-19 18:55 1.6K gap.txt.gz 2009-07-20 15:57 1.0M gap.sql 2009-07-20 15:57 1.5K extFile.txt.gz 2009-07-20 16:05 223 extFile.sql 2009-07-20 16:05 1.3K estOrientInfo.txt.gz 2011-04-18 07:22 6.6K estOrientInfo.sql 2011-04-18 07:22 1.7K ensemblToGeneName.txt.gz 2019-02-10 03:42 104K ensemblToGeneName.sql 2019-02-10 03:42 1.4K ensemblSource.txt.gz 2019-02-10 03:42 96K ensemblSource.sql 2019-02-10 03:42 1.4K ensPep.txt.gz 2019-02-10 03:42 6.4M ensPep.sql 2019-02-10 03:42 1.3K ensGtp.txt.gz 2019-02-10 03:42 327K ensGtp.sql 2019-02-10 03:42 1.4K ensGene.txt.gz 2019-02-10 03:42 2.5M ensGene.sql 2019-02-10 03:42 1.9K cytoBandIdeo.txt.gz 2013-04-28 19:07 155 cytoBandIdeo.sql 2013-04-28 19:07 1.5K cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K cpgIslandExt.txt.gz 2009-07-20 15:58 484K cpgIslandExt.sql 2009-07-20 15:58 1.6K chromInfo.txt.gz 2009-07-20 15:58 164 chromInfo.sql 2009-07-20 15:58 1.2K chromAlias.txt.gz 2017-09-03 05:42 205 chromAlias.sql 2017-09-03 05:42 1.4K chainXenTro9Link.txt.gz 2017-12-14 12:36 809M chainXenTro9Link.sql 2017-12-14 12:35 1.5K chainXenTro9.txt.gz 2017-12-14 12:34 230M chainXenTro9.sql 2017-12-14 12:34 1.7K chainXenTro3Link.txt.gz 2019-06-02 03:23 788M chainXenTro3Link.sql 2019-06-02 03:22 1.5K chainXenTro3.txt.gz 2019-06-02 03:21 223M chainXenTro3.sql 2019-06-02 03:21 1.7K chainSusScr2Link.txt.gz 2010-12-10 11:46 520M chainSusScr2Link.sql 2010-12-10 11:45 1.5K chainSusScr2.txt.gz 2010-12-10 11:25 153M chainSusScr2.sql 2010-12-10 11:24 1.6K chainRn6Link.txt.gz 2017-03-27 16:57 749M chainRn6Link.sql 2017-03-27 16:49 1.5K chainRn6.txt.gz 2017-03-27 16:46 103M chainRn6.sql 2017-03-27 16:45 1.7K chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G chainRheMac3Link.sql 2012-12-02 18:42 1.6K chainRheMac3.txt.gz 2012-12-02 18:40 559M chainRheMac3.sql 2012-12-02 18:39 1.7K chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G chainPonAbe2Link.sql 2010-12-10 11:36 1.5K chainPonAbe2.txt.gz 2010-12-10 12:20 430M chainPonAbe2.sql 2010-12-10 12:19 1.8K chainPetMar2Link.txt.gz 2013-01-24 03:47 43M chainPetMar2Link.sql 2013-01-24 03:47 1.6K chainPetMar2.txt.gz 2013-01-24 03:48 13M chainPetMar2.sql 2013-01-24 03:48 1.7K chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G chainPanTro3Link.sql 2011-06-12 11:15 1.5K chainPanTro3.txt.gz 2011-06-12 11:25 344M chainPanTro3.sql 2011-06-12 11:24 1.6K chainOviAri1Link.txt.gz 2011-04-25 09:59 114M chainOviAri1Link.sql 2011-04-25 09:58 1.5K chainOviAri1.txt.gz 2011-04-25 10:01 33M chainOviAri1.sql 2011-04-25 10:01 1.6K chainOryCun2Link.txt.gz 2010-12-10 11:10 966M chainOryCun2Link.sql 2010-12-10 11:08 1.5K chainOryCun2.txt.gz 2010-12-10 12:28 337M chainOryCun2.sql 2010-12-10 12:27 1.6K chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M chainOrnAna1Link.sql 2010-12-10 11:49 1.5K chainOrnAna1.txt.gz 2010-12-10 11:34 88M chainOrnAna1.sql 2010-12-10 11:34 1.8K chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G chainNeoSch1Link.sql 2020-07-17 10:30 1.6K chainNeoSch1.txt.gz 2020-07-17 10:23 318M chainNeoSch1.sql 2020-07-17 10:23 1.7K chainMm39Link.txt.gz 2020-11-25 07:49 240M chainMm39Link.sql 2020-11-25 07:49 1.6K chainMm39.txt.gz 2020-11-25 07:47 41M chainMm39.sql 2020-11-25 07:47 1.7K chainMm10Link.txt.gz 2013-10-27 18:40 1.1G chainMm10Link.sql 2013-10-27 18:38 1.5K chainMm10.txt.gz 2013-10-27 18:38 198M chainMm10.sql 2013-10-27 18:38 1.7K chainMelGal5Link.txt.gz 2017-03-20 09:11 42M chainMelGal5Link.sql 2017-03-20 09:11 1.5K chainMelGal5.txt.gz 2017-03-20 09:11 12M chainMelGal5.sql 2017-03-20 09:11 1.7K chainMelGal1Link.txt.gz 2011-11-06 14:53 36M chainMelGal1Link.sql 2011-11-06 14:53 1.5K chainMelGal1.txt.gz 2011-11-06 14:55 7.9M chainMelGal1.sql 2011-11-06 14:55 1.6K chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K chainLoxAfr3.txt.gz 2011-11-21 19:09 420M chainLoxAfr3.sql 2011-11-21 19:08 1.6K chainHg19Link.txt.gz 2010-12-10 11:28 1.2G chainHg19Link.sql 2010-12-10 11:25 1.5K chainHg19.txt.gz 2010-12-10 12:26 340M chainHg19.sql 2010-12-10 12:25 1.8K chainGalGal3Link.txt.gz 2010-12-10 10:58 144M chainGalGal3Link.sql 2010-12-10 10:57 1.5K chainGalGal3.txt.gz 2010-12-10 11:53 40M chainGalGal3.sql 2010-12-10 11:53 1.8K chainFelCat4Link.txt.gz 2010-12-10 11:52 165M chainFelCat4Link.sql 2010-12-10 11:51 1.5K chainFelCat4.txt.gz 2010-12-10 11:48 28M chainFelCat4.sql 2010-12-10 11:48 1.6K chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G chainEquCab2Link.sql 2010-12-10 12:05 1.5K chainEquCab2.txt.gz 2010-12-10 11:23 254M chainEquCab2.sql 2010-12-10 11:23 1.8K chainDanRer5Link.txt.gz 2010-12-10 12:30 98M chainDanRer5Link.sql 2010-12-10 12:30 1.5K chainDanRer5.txt.gz 2010-12-10 11:02 19M chainDanRer5.sql 2010-12-10 11:02 1.8K chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G chainCerSim1Link.sql 2013-01-29 23:26 1.6K chainCerSim1.txt.gz 2013-01-29 23:32 253M chainCerSim1.sql 2013-01-29 23:32 1.7K chainCanFam2Link.txt.gz 2010-12-10 11:01 330M chainCanFam2Link.sql 2010-12-10 11:00 1.5K chainCanFam2.txt.gz 2010-12-10 11:51 39M chainCanFam2.sql 2010-12-10 11:51 1.8K chainCalJac3Link.txt.gz 2010-12-10 11:05 758M chainCalJac3Link.sql 2010-12-10 11:03 1.5K chainCalJac3.txt.gz 2010-12-10 11:21 272M chainCalJac3.sql 2010-12-10 11:20 1.6K chainBosTau7Link.txt.gz 2012-06-16 19:57 776M chainBosTau7Link.sql 2012-06-16 19:47 1.5K chainBosTau7.txt.gz 2012-06-16 20:30 250M chainBosTau7.sql 2012-06-16 20:27 1.6K chainAilMel1Link.txt.gz 2010-12-10 12:31 213M chainAilMel1Link.sql 2010-12-10 12:31 1.5K chainAilMel1.txt.gz 2010-12-10 11:02 33M chainAilMel1.sql 2010-12-10 11:02 1.6K blastHg18KG.txt.gz 2009-07-20 16:02 3.6M blastHg18KG.sql 2009-07-20 16:02 2.1K bigFiles.txt.gz 2024-04-14 03:17 33 bigFiles.sql 2024-04-14 03:17 1.4K augustusGene.txt.gz 2015-07-26 16:46 2.0M augustusGene.sql 2015-07-26 16:46 1.9K all_mrna.txt.gz 2020-08-19 18:14 61K all_mrna.sql 2020-08-19 18:14 2.1K all_est.txt.gz 2011-04-18 07:18 17K all_est.sql 2011-04-18 07:18 2.0K