This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom5/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

-----------------------------------------------------------
All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                         Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-04-14 03:17 33 cytoBandIdeo.txt.gz 2013-04-28 19:07 155 chromInfo.txt.gz 2009-07-20 15:58 164 chromAlias.txt.gz 2017-09-03 05:42 205 grp.txt.gz 2014-03-02 04:14 208 extFile.txt.gz 2009-07-20 16:05 223 hgFindSpec_pushedout.txt.gz 2023-03-28 13:51 1.0K hgFindSpec.txt.gz 2024-01-31 15:13 1.0K nscanPep.sql 2009-07-20 16:05 1.1K genscanPep.sql 2009-07-20 15:58 1.2K chromInfo.sql 2009-07-20 15:58 1.2K extFile.sql 2009-07-20 16:05 1.3K ensPep.sql 2019-02-10 03:42 1.3K ensemblSource.sql 2019-02-10 03:42 1.4K windowmaskerSdust.sql 2009-07-20 15:59 1.4K bigFiles.sql 2024-04-14 03:17 1.4K grp.sql 2014-03-02 04:14 1.4K ensemblToGeneName.sql 2019-02-10 03:42 1.4K ensGtp.sql 2019-02-10 03:42 1.4K chromAlias.sql 2017-09-03 05:42 1.4K history.sql 2009-07-20 16:05 1.4K tableDescriptions.sql 2024-04-13 02:03 1.4K chainAilMel1Link.sql 2010-12-10 12:31 1.5K chainBosTau7Link.sql 2012-06-16 19:47 1.5K chainCalJac3Link.sql 2010-12-10 11:03 1.5K chainFelCat4Link.sql 2010-12-10 11:51 1.5K chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K chainMelGal1Link.sql 2011-11-06 14:53 1.5K chainOryCun2Link.sql 2010-12-10 11:08 1.5K chainOviAri1Link.sql 2011-04-25 09:58 1.5K chainPanTro3Link.sql 2011-06-12 11:15 1.5K chainSusScr2Link.sql 2010-12-10 11:45 1.5K microsat.sql 2015-08-23 21:56 1.5K phastConsElements9way.sql 2010-12-10 11:22 1.5K gap.sql 2009-07-20 15:57 1.5K cytoBandIdeo.sql 2013-04-28 19:07 1.5K chainRn6Link.sql 2017-03-27 16:49 1.5K chainHg19Link.sql 2010-12-10 11:25 1.5K chainMm10Link.sql 2013-10-27 18:38 1.5K multiz9way.sql 2010-12-10 11:22 1.5K chainCanFam2Link.sql 2010-12-10 11:00 1.5K chainDanRer5Link.sql 2010-12-10 12:30 1.5K chainEquCab2Link.sql 2010-12-10 12:05 1.5K chainGalGal3Link.sql 2010-12-10 10:57 1.5K chainMelGal5Link.sql 2017-03-20 09:11 1.5K chainOrnAna1Link.sql 2010-12-10 11:49 1.5K chainPonAbe2Link.sql 2010-12-10 11:36 1.5K chainXenTro9Link.sql 2017-12-14 12:35 1.5K chainXenTro3Link.sql 2019-06-02 03:22 1.5K chainCerSim1Link.sql 2013-01-29 23:26 1.6K chainPetMar2Link.sql 2013-01-24 03:47 1.6K chainRheMac3Link.sql 2012-12-02 18:42 1.6K chainMm39Link.sql 2020-11-25 07:49 1.6K tableList.sql 2024-04-14 03:17 1.6K chainNeoSch1Link.sql 2020-07-17 10:30 1.6K multiz9waySummary.sql 2010-12-10 11:57 1.6K genscan.sql 2009-07-20 15:57 1.6K gold.sql 2009-07-20 16:06 1.6K gbLoaded.sql 2020-08-19 18:55 1.6K cpgIslandExt.sql 2009-07-20 15:58 1.6K chainAilMel1.sql 2010-12-10 11:02 1.6K chainBosTau7.sql 2012-06-16 20:27 1.6K chainCalJac3.sql 2010-12-10 11:20 1.6K chainFelCat4.sql 2010-12-10 11:48 1.6K chainLoxAfr3.sql 2011-11-21 19:08 1.6K chainMelGal1.sql 2011-11-06 14:55 1.6K chainOryCun2.sql 2010-12-10 12:27 1.6K chainOviAri1.sql 2011-04-25 10:01 1.6K chainPanTro3.sql 2011-06-12 11:24 1.6K chainSusScr2.sql 2010-12-10 11:24 1.6K tRNAs.sql 2012-04-16 03:06 1.7K estOrientInfo.sql 2011-04-18 07:22 1.7K chainRn6.sql 2017-03-27 16:45 1.7K chainMm10.sql 2013-10-27 18:38 1.7K chainMelGal5.sql 2017-03-20 09:11 1.7K chainXenTro9.sql 2017-12-14 12:34 1.7K cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K chainXenTro3.sql 2019-06-02 03:21 1.7K chainCerSim1.sql 2013-01-29 23:32 1.7K chainPetMar2.sql 2013-01-24 03:48 1.7K chainRheMac3.sql 2012-12-02 18:39 1.7K gc5Base.sql 2009-07-20 16:01 1.7K quality.sql 2009-07-20 15:58 1.7K chainMm39.sql 2020-11-25 07:47 1.7K refFlat.sql 2020-08-19 18:28 1.7K chainNeoSch1.sql 2020-07-17 10:23 1.7K xenoRefFlat.sql 2020-08-19 18:32 1.7K hgFindSpec.sql 2024-01-31 15:13 1.8K chainHg19.sql 2010-12-10 12:25 1.8K chainCanFam2.sql 2010-12-10 11:51 1.8K chainDanRer5.sql 2010-12-10 11:02 1.8K chainEquCab2.sql 2010-12-10 11:23 1.8K chainGalGal3.sql 2010-12-10 11:53 1.8K chainOrnAna1.sql 2010-12-10 11:34 1.8K chainPonAbe2.sql 2010-12-10 12:19 1.8K hgFindSpec_pushedout.sql 2023-03-28 13:51 1.8K mrnaOrientInfo.sql 2020-08-19 18:32 1.8K multiz9wayFrames.sql 2010-12-10 12:25 1.8K rmsk.sql 2009-07-20 16:02 1.9K phastCons9way.sql 2010-12-10 11:03 1.9K nscanGene.sql 2009-07-20 16:02 1.9K nestedRepeats.sql 2009-07-20 15:57 1.9K simpleRepeat.sql 2009-07-20 16:05 1.9K ensGene.sql 2019-02-10 03:42 1.9K augustusGene.sql 2015-07-26 16:46 1.9K refGene.sql 2020-08-19 18:28 1.9K xenoRefGene.sql 2020-08-19 18:32 2.0K netAilMel1.sql 2010-12-10 12:33 2.0K netBosTau7.sql 2012-06-16 20:25 2.0K netCalJac3.sql 2010-12-10 12:29 2.0K netFelCat4.sql 2010-12-10 11:51 2.0K netLoxAfr3.sql 2011-11-21 19:12 2.0K netMelGal1.sql 2011-11-06 14:42 2.0K netOryCun2.sql 2010-12-10 11:03 2.0K netOviAri1.sql 2011-04-25 10:01 2.0K netPanTro3.sql 2011-06-12 11:15 2.0K netSusScr2.sql 2010-12-10 11:57 2.0K all_est.sql 2011-04-18 07:18 2.0K intronEst.sql 2011-04-18 07:19 2.0K trackDb.sql 2024-01-31 15:13 2.1K netRn6.sql 2017-03-27 17:27 2.1K trackDb_pushedout.sql 2023-03-28 13:51 2.1K netMm10.sql 2013-10-27 18:43 2.1K netMelGal5.sql 2017-03-20 09:13 2.1K netXenTro3.sql 2019-06-02 03:26 2.1K netXenTro9.sql 2017-12-14 12:38 2.1K netCerSim1.sql 2013-01-29 23:26 2.1K netPetMar2.sql 2013-01-24 03:47 2.1K netRheMac3.sql 2012-12-02 18:39 2.1K netMm39.sql 2020-11-25 07:50 2.1K netNeoSch1.sql 2020-07-17 10:31 2.1K all_mrna.sql 2020-08-19 18:14 2.1K xenoMrna.sql 2020-08-19 18:14 2.1K refSeqAli.sql 2020-08-19 18:45 2.1K blastHg18KG.sql 2009-07-20 16:02 2.1K xenoRefSeqAli.sql 2020-08-19 18:45 2.1K netHg19.sql 2010-12-10 11:53 2.3K netCanFam2.sql 2010-12-10 11:48 2.3K netDanRer5.sql 2010-12-10 12:33 2.3K netEquCab2.sql 2010-12-10 11:57 2.3K netGalGal3.sql 2010-12-10 11:45 2.3K netOrnAna1.sql 2010-12-10 11:56 2.3K netPonAbe2.sql 2010-12-10 11:22 2.3K history.txt.gz 2009-07-20 16:05 3.7K estOrientInfo.txt.gz 2011-04-18 07:22 6.6K tableList.txt.gz 2024-04-14 03:17 7.4K tableDescriptions.txt.gz 2024-04-13 02:03 9.1K intronEst.txt.gz 2011-04-18 07:19 9.5K tRNAs.txt.gz 2012-04-16 03:06 12K all_est.txt.gz 2011-04-18 07:18 17K mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K refFlat.txt.gz 2020-08-19 18:28 38K refSeqAli.txt.gz 2020-08-19 18:45 40K refGene.txt.gz 2020-08-19 18:28 43K all_mrna.txt.gz 2020-08-19 18:14 61K trackDb_pushedout.txt.gz 2023-03-28 13:51 73K trackDb.txt.gz 2024-01-31 15:13 73K ensemblSource.txt.gz 2019-02-10 03:42 96K ensemblToGeneName.txt.gz 2019-02-10 03:42 104K gbLoaded.txt.gz 2020-08-19 18:55 111K ensGtp.txt.gz 2019-02-10 03:42 327K cpgIslandExt.txt.gz 2009-07-20 15:58 484K cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K microsat.txt.gz 2015-08-23 21:56 1.0M gap.txt.gz 2009-07-20 15:57 1.0M gold.txt.gz 2009-07-20 16:06 1.3M augustusGene.txt.gz 2015-07-26 16:46 2.0M genscan.txt.gz 2009-07-20 15:57 2.3M ensGene.txt.gz 2019-02-10 03:42 2.5M netPetMar2.txt.gz 2013-01-24 03:47 2.8M blastHg18KG.txt.gz 2009-07-20 16:02 3.6M nscanGene.txt.gz 2009-07-20 16:02 3.6M ensPep.txt.gz 2019-02-10 03:42 6.4M netXenTro3.txt.gz 2019-06-02 03:26 7.5M phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M netXenTro9.txt.gz 2017-12-14 12:38 7.8M genscanPep.txt.gz 2009-07-20 15:58 7.9M chainMelGal1.txt.gz 2011-11-06 14:55 7.9M netMelGal5.txt.gz 2017-03-20 09:13 8.5M netMelGal1.txt.gz 2011-11-06 14:42 8.5M netDanRer5.txt.gz 2010-12-10 12:33 8.8M netGalGal3.txt.gz 2010-12-10 11:45 9.3M chainMelGal5.txt.gz 2017-03-20 09:11 12M nscanPep.txt.gz 2009-07-20 16:05 12M chainPetMar2.txt.gz 2013-01-24 03:48 13M gc5Base.txt.gz 2009-07-20 16:02 14M netMm39.txt.gz 2020-11-25 07:50 15M netOviAri1.txt.gz 2011-04-25 10:01 16M netSusScr2.txt.gz 2010-12-10 11:57 17M netOryCun2.txt.gz 2010-12-10 11:03 18M multiz9wayFrames.txt.gz 2010-12-10 12:25 18M netFelCat4.txt.gz 2010-12-10 11:51 18M chainDanRer5.txt.gz 2010-12-10 11:02 19M netBosTau7.txt.gz 2012-06-16 20:26 20M netCalJac3.txt.gz 2010-12-10 12:30 21M netRheMac3.txt.gz 2012-12-02 18:39 21M netAilMel1.txt.gz 2010-12-10 12:33 21M netLoxAfr3.txt.gz 2011-11-21 19:12 22M nestedRepeats.txt.gz 2009-07-20 15:57 23M xenoRefFlat.txt.gz 2020-08-19 18:32 23M netOrnAna1.txt.gz 2010-12-10 11:56 23M netMm10.txt.gz 2013-10-27 18:44 23M netRn6.txt.gz 2017-03-27 17:27 24M xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M xenoRefGene.txt.gz 2020-08-19 18:32 26M simpleRepeat.txt.gz 2009-07-20 16:05 26M netCanFam2.txt.gz 2010-12-10 11:48 26M netPonAbe2.txt.gz 2010-12-10 11:23 28M netEquCab2.txt.gz 2010-12-10 11:57 28M chainFelCat4.txt.gz 2010-12-10 11:48 28M netCerSim1.txt.gz 2013-01-29 23:26 29M netNeoSch1.txt.gz 2020-07-17 10:31 33M chainAilMel1.txt.gz 2010-12-10 11:02 33M multiz9waySummary.txt.gz 2010-12-10 11:57 33M chainOviAri1.txt.gz 2011-04-25 10:01 33M netPanTro3.txt.gz 2011-06-12 11:15 34M netHg19.txt.gz 2010-12-10 11:53 34M chainMelGal1Link.txt.gz 2011-11-06 14:53 36M chainCanFam2.txt.gz 2010-12-10 11:51 39M chainGalGal3.txt.gz 2010-12-10 11:53 40M chainMm39.txt.gz 2020-11-25 07:47 41M chainMelGal5Link.txt.gz 2017-03-20 09:11 42M chainPetMar2Link.txt.gz 2013-01-24 03:47 43M quality.txt.gz 2009-07-20 15:59 64M phastCons9way.txt.gz 2010-12-10 11:03 76M chainOrnAna1.txt.gz 2010-12-10 11:34 88M multiz9way.txt.gz 2010-12-10 11:22 93M chainDanRer5Link.txt.gz 2010-12-10 12:30 98M chainRn6.txt.gz 2017-03-27 16:46 103M chainOviAri1Link.txt.gz 2011-04-25 09:59 114M chainGalGal3Link.txt.gz 2010-12-10 10:58 144M chainSusScr2.txt.gz 2010-12-10 11:25 153M chainFelCat4Link.txt.gz 2010-12-10 11:52 165M chainMm10.txt.gz 2013-10-27 18:38 198M rmsk.txt.gz 2009-07-20 16:03 199M windowmaskerSdust.txt.gz 2009-07-20 16:00 204M chainAilMel1Link.txt.gz 2010-12-10 12:31 213M xenoMrna.txt.gz 2020-08-19 18:14 213M chainXenTro3.txt.gz 2019-06-02 03:21 223M chainXenTro9.txt.gz 2017-12-14 12:34 230M chainMm39Link.txt.gz 2020-11-25 07:49 240M chainBosTau7.txt.gz 2012-06-16 20:30 250M chainCerSim1.txt.gz 2013-01-29 23:32 253M chainEquCab2.txt.gz 2010-12-10 11:23 254M chainCalJac3.txt.gz 2010-12-10 11:21 272M chainNeoSch1.txt.gz 2020-07-17 10:23 318M chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M chainCanFam2Link.txt.gz 2010-12-10 11:01 330M chainOryCun2.txt.gz 2010-12-10 12:28 337M chainHg19.txt.gz 2010-12-10 12:26 340M chainPanTro3.txt.gz 2011-06-12 11:25 344M chainLoxAfr3.txt.gz 2011-11-21 19:09 420M chainPonAbe2.txt.gz 2010-12-10 12:20 430M chainSusScr2Link.txt.gz 2010-12-10 11:46 520M chainRheMac3.txt.gz 2012-12-02 18:40 559M chainRn6Link.txt.gz 2017-03-27 16:57 749M chainCalJac3Link.txt.gz 2010-12-10 11:05 758M chainBosTau7Link.txt.gz 2012-06-16 19:57 776M chainXenTro3Link.txt.gz 2019-06-02 03:23 788M chainXenTro9Link.txt.gz 2017-12-14 12:36 809M chainOryCun2Link.txt.gz 2010-12-10 11:10 966M chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G chainMm10Link.txt.gz 2013-10-27 18:40 1.1G chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G chainHg19Link.txt.gz 2010-12-10 11:28 1.2G chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G