This directory contains a dump of the UCSC genome annotation
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.
The directory is updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/monDom5/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-----------------------------------------------------------
All the tables in this directory are freely usable for any
purpose. The opossum sequence is made freely available before scientific
publication with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of these data (The
Broad Institute) are properly acknowledged.
3. The centers producing the data reserve the right to publish the
initial large-scale analyses of the data set, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M
xenoRefSeqAli.sql 2020-08-19 18:45 2.1K
xenoRefGene.txt.gz 2020-08-19 18:32 26M
xenoRefGene.sql 2020-08-19 18:32 2.0K
xenoRefFlat.txt.gz 2020-08-19 18:32 23M
xenoRefFlat.sql 2020-08-19 18:32 1.7K
xenoMrna.txt.gz 2020-08-19 18:14 213M
xenoMrna.sql 2020-08-19 18:14 2.1K
windowmaskerSdust.txt.gz 2009-07-20 16:00 204M
windowmaskerSdust.sql 2009-07-20 15:59 1.4K
trackDb.txt.gz 2024-01-31 15:13 73K
trackDb.sql 2024-01-31 15:13 2.1K
tableList.txt.gz 2024-11-17 03:26 7.2K
tableList.sql 2024-11-17 03:26 1.6K
tableDescriptions.txt.gz 2024-11-16 02:03 9.1K
tableDescriptions.sql 2024-11-16 02:03 1.4K
tRNAs.txt.gz 2012-04-16 03:06 12K
tRNAs.sql 2012-04-16 03:06 1.7K
simpleRepeat.txt.gz 2009-07-20 16:05 26M
simpleRepeat.sql 2009-07-20 16:05 1.9K
rmsk.txt.gz 2009-07-20 16:03 199M
rmsk.sql 2009-07-20 16:02 1.9K
refSeqAli.txt.gz 2020-08-19 18:45 40K
refSeqAli.sql 2020-08-19 18:45 2.1K
refGene.txt.gz 2020-08-19 18:28 43K
refGene.sql 2020-08-19 18:28 1.9K
refFlat.txt.gz 2020-08-19 18:28 38K
refFlat.sql 2020-08-19 18:28 1.7K
quality.txt.gz 2009-07-20 15:59 64M
quality.sql 2009-07-20 15:58 1.7K
phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M
phastConsElements9way.sql 2010-12-10 11:22 1.5K
phastCons9way.txt.gz 2010-12-10 11:03 76M
phastCons9way.sql 2010-12-10 11:03 1.9K
nscanPep.txt.gz 2009-07-20 16:05 12M
nscanPep.sql 2009-07-20 16:05 1.1K
nscanGene.txt.gz 2009-07-20 16:02 3.6M
nscanGene.sql 2009-07-20 16:02 1.9K
netXenTro9.txt.gz 2017-12-14 12:38 7.8M
netXenTro9.sql 2017-12-14 12:38 2.1K
netXenTro3.txt.gz 2019-06-02 03:26 7.5M
netXenTro3.sql 2019-06-02 03:26 2.1K
netSusScr2.txt.gz 2010-12-10 11:57 17M
netSusScr2.sql 2010-12-10 11:57 2.0K
netRn6.txt.gz 2017-03-27 17:27 24M
netRn6.sql 2017-03-27 17:27 2.1K
netRheMac3.txt.gz 2012-12-02 18:39 21M
netRheMac3.sql 2012-12-02 18:39 2.1K
netPonAbe2.txt.gz 2010-12-10 11:23 28M
netPonAbe2.sql 2010-12-10 11:22 2.3K
netPetMar2.txt.gz 2013-01-24 03:47 2.8M
netPetMar2.sql 2013-01-24 03:47 2.1K
netPanTro3.txt.gz 2011-06-12 11:15 34M
netPanTro3.sql 2011-06-12 11:15 2.0K
netOviAri1.txt.gz 2011-04-25 10:01 16M
netOviAri1.sql 2011-04-25 10:01 2.0K
netOryCun2.txt.gz 2010-12-10 11:03 18M
netOryCun2.sql 2010-12-10 11:03 2.0K
netOrnAna1.txt.gz 2010-12-10 11:56 23M
netOrnAna1.sql 2010-12-10 11:56 2.3K
netNeoSch1.txt.gz 2020-07-17 10:31 33M
netNeoSch1.sql 2020-07-17 10:31 2.1K
netMm39.txt.gz 2020-11-25 07:50 15M
netMm39.sql 2020-11-25 07:50 2.1K
netMm10.txt.gz 2013-10-27 18:44 23M
netMm10.sql 2013-10-27 18:43 2.1K
netMelGal5.txt.gz 2017-03-20 09:13 8.5M
netMelGal5.sql 2017-03-20 09:13 2.1K
netMelGal1.txt.gz 2011-11-06 14:42 8.5M
netMelGal1.sql 2011-11-06 14:42 2.0K
netLoxAfr3.txt.gz 2011-11-21 19:12 22M
netLoxAfr3.sql 2011-11-21 19:12 2.0K
netHg19.txt.gz 2010-12-10 11:53 34M
netHg19.sql 2010-12-10 11:53 2.3K
netGalGal3.txt.gz 2010-12-10 11:45 9.3M
netGalGal3.sql 2010-12-10 11:45 2.3K
netFelCat4.txt.gz 2010-12-10 11:51 18M
netFelCat4.sql 2010-12-10 11:51 2.0K
netEquCab2.txt.gz 2010-12-10 11:57 28M
netEquCab2.sql 2010-12-10 11:57 2.3K
netDanRer5.txt.gz 2010-12-10 12:33 8.8M
netDanRer5.sql 2010-12-10 12:33 2.3K
netCerSim1.txt.gz 2013-01-29 23:26 29M
netCerSim1.sql 2013-01-29 23:26 2.1K
netCanFam2.txt.gz 2010-12-10 11:48 26M
netCanFam2.sql 2010-12-10 11:48 2.3K
netCalJac3.txt.gz 2010-12-10 12:30 21M
netCalJac3.sql 2010-12-10 12:29 2.0K
netBosTau7.txt.gz 2012-06-16 20:26 20M
netBosTau7.sql 2012-06-16 20:25 2.0K
netAilMel1.txt.gz 2010-12-10 12:33 21M
netAilMel1.sql 2010-12-10 12:33 2.0K
nestedRepeats.txt.gz 2009-07-20 15:57 23M
nestedRepeats.sql 2009-07-20 15:57 1.9K
multiz9waySummary.txt.gz 2010-12-10 11:57 33M
multiz9waySummary.sql 2010-12-10 11:57 1.6K
multiz9wayFrames.txt.gz 2010-12-10 12:25 18M
multiz9wayFrames.sql 2010-12-10 12:25 1.8K
multiz9way.txt.gz 2010-12-10 11:22 93M
multiz9way.sql 2010-12-10 11:22 1.5K
mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K
mrnaOrientInfo.sql 2020-08-19 18:32 1.8K
microsat.txt.gz 2015-08-23 21:56 1.0M
microsat.sql 2015-08-23 21:56 1.5K
intronEst.txt.gz 2011-04-18 07:19 9.5K
intronEst.sql 2011-04-18 07:19 2.0K
history.txt.gz 2009-07-20 16:05 3.7K
history.sql 2009-07-20 16:05 1.4K
hgFindSpec.txt.gz 2024-01-31 15:13 1.0K
hgFindSpec.sql 2024-01-31 15:13 1.8K
grp.txt.gz 2014-03-02 04:14 208
grp.sql 2014-03-02 04:14 1.4K
gold.txt.gz 2009-07-20 16:06 1.3M
gold.sql 2009-07-20 16:06 1.6K
genscanPep.txt.gz 2009-07-20 15:58 7.9M
genscanPep.sql 2009-07-20 15:58 1.2K
genscan.txt.gz 2009-07-20 15:57 2.3M
genscan.sql 2009-07-20 15:57 1.6K
gc5Base.txt.gz 2009-07-20 16:02 14M
gc5Base.sql 2009-07-20 16:01 1.7K
gbLoaded.txt.gz 2020-08-19 18:55 111K
gbLoaded.sql 2020-08-19 18:55 1.6K
gap.txt.gz 2009-07-20 15:57 1.0M
gap.sql 2009-07-20 15:57 1.5K
extFile.txt.gz 2009-07-20 16:05 223
extFile.sql 2009-07-20 16:05 1.3K
estOrientInfo.txt.gz 2011-04-18 07:22 6.6K
estOrientInfo.sql 2011-04-18 07:22 1.7K
ensemblToGeneName.txt.gz 2019-02-10 03:42 104K
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
ensemblSource.txt.gz 2019-02-10 03:42 96K
ensemblSource.sql 2019-02-10 03:42 1.4K
ensPep.txt.gz 2019-02-10 03:42 6.4M
ensPep.sql 2019-02-10 03:42 1.3K
ensGtp.txt.gz 2019-02-10 03:42 327K
ensGtp.sql 2019-02-10 03:42 1.4K
ensGene.txt.gz 2019-02-10 03:42 2.5M
ensGene.sql 2019-02-10 03:42 1.9K
cytoBandIdeo.txt.gz 2013-04-28 19:07 155
cytoBandIdeo.sql 2013-04-28 19:07 1.5K
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K
cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K
cpgIslandExt.txt.gz 2009-07-20 15:58 484K
cpgIslandExt.sql 2009-07-20 15:58 1.6K
chromInfo.txt.gz 2009-07-20 15:58 164
chromInfo.sql 2009-07-20 15:58 1.2K
chromAlias.txt.gz 2017-09-03 05:42 205
chromAlias.sql 2017-09-03 05:42 1.4K
chainXenTro9Link.txt.gz 2017-12-14 12:36 809M
chainXenTro9Link.sql 2017-12-14 12:35 1.5K
chainXenTro9.txt.gz 2017-12-14 12:34 230M
chainXenTro9.sql 2017-12-14 12:34 1.7K
chainXenTro3Link.txt.gz 2019-06-02 03:23 788M
chainXenTro3Link.sql 2019-06-02 03:22 1.5K
chainXenTro3.txt.gz 2019-06-02 03:21 223M
chainXenTro3.sql 2019-06-02 03:21 1.7K
chainSusScr2Link.txt.gz 2010-12-10 11:46 520M
chainSusScr2Link.sql 2010-12-10 11:45 1.5K
chainSusScr2.txt.gz 2010-12-10 11:25 153M
chainSusScr2.sql 2010-12-10 11:24 1.6K
chainRn6Link.txt.gz 2017-03-27 16:57 749M
chainRn6Link.sql 2017-03-27 16:49 1.5K
chainRn6.txt.gz 2017-03-27 16:46 103M
chainRn6.sql 2017-03-27 16:45 1.7K
chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G
chainRheMac3Link.sql 2012-12-02 18:42 1.6K
chainRheMac3.txt.gz 2012-12-02 18:40 559M
chainRheMac3.sql 2012-12-02 18:39 1.7K
chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G
chainPonAbe2Link.sql 2010-12-10 11:36 1.5K
chainPonAbe2.txt.gz 2010-12-10 12:20 430M
chainPonAbe2.sql 2010-12-10 12:19 1.8K
chainPetMar2Link.txt.gz 2013-01-24 03:47 43M
chainPetMar2Link.sql 2013-01-24 03:47 1.6K
chainPetMar2.txt.gz 2013-01-24 03:48 13M
chainPetMar2.sql 2013-01-24 03:48 1.7K
chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G
chainPanTro3Link.sql 2011-06-12 11:15 1.5K
chainPanTro3.txt.gz 2011-06-12 11:25 344M
chainPanTro3.sql 2011-06-12 11:24 1.6K
chainOviAri1Link.txt.gz 2011-04-25 09:59 114M
chainOviAri1Link.sql 2011-04-25 09:58 1.5K
chainOviAri1.txt.gz 2011-04-25 10:01 33M
chainOviAri1.sql 2011-04-25 10:01 1.6K
chainOryCun2Link.txt.gz 2010-12-10 11:10 966M
chainOryCun2Link.sql 2010-12-10 11:08 1.5K
chainOryCun2.txt.gz 2010-12-10 12:28 337M
chainOryCun2.sql 2010-12-10 12:27 1.6K
chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M
chainOrnAna1Link.sql 2010-12-10 11:49 1.5K
chainOrnAna1.txt.gz 2010-12-10 11:34 88M
chainOrnAna1.sql 2010-12-10 11:34 1.8K
chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G
chainNeoSch1Link.sql 2020-07-17 10:30 1.6K
chainNeoSch1.txt.gz 2020-07-17 10:23 318M
chainNeoSch1.sql 2020-07-17 10:23 1.7K
chainMm39Link.txt.gz 2020-11-25 07:49 240M
chainMm39Link.sql 2020-11-25 07:49 1.6K
chainMm39.txt.gz 2020-11-25 07:47 41M
chainMm39.sql 2020-11-25 07:47 1.7K
chainMm10Link.txt.gz 2013-10-27 18:40 1.1G
chainMm10Link.sql 2013-10-27 18:38 1.5K
chainMm10.txt.gz 2013-10-27 18:38 198M
chainMm10.sql 2013-10-27 18:38 1.7K
chainMelGal5Link.txt.gz 2017-03-20 09:11 42M
chainMelGal5Link.sql 2017-03-20 09:11 1.5K
chainMelGal5.txt.gz 2017-03-20 09:11 12M
chainMelGal5.sql 2017-03-20 09:11 1.7K
chainMelGal1Link.txt.gz 2011-11-06 14:53 36M
chainMelGal1Link.sql 2011-11-06 14:53 1.5K
chainMelGal1.txt.gz 2011-11-06 14:55 7.9M
chainMelGal1.sql 2011-11-06 14:55 1.6K
chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G
chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K
chainLoxAfr3.txt.gz 2011-11-21 19:09 420M
chainLoxAfr3.sql 2011-11-21 19:08 1.6K
chainHg19Link.txt.gz 2010-12-10 11:28 1.2G
chainHg19Link.sql 2010-12-10 11:25 1.5K
chainHg19.txt.gz 2010-12-10 12:26 340M
chainHg19.sql 2010-12-10 12:25 1.8K
chainGalGal3Link.txt.gz 2010-12-10 10:58 144M
chainGalGal3Link.sql 2010-12-10 10:57 1.5K
chainGalGal3.txt.gz 2010-12-10 11:53 40M
chainGalGal3.sql 2010-12-10 11:53 1.8K
chainFelCat4Link.txt.gz 2010-12-10 11:52 165M
chainFelCat4Link.sql 2010-12-10 11:51 1.5K
chainFelCat4.txt.gz 2010-12-10 11:48 28M
chainFelCat4.sql 2010-12-10 11:48 1.6K
chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G
chainEquCab2Link.sql 2010-12-10 12:05 1.5K
chainEquCab2.txt.gz 2010-12-10 11:23 254M
chainEquCab2.sql 2010-12-10 11:23 1.8K
chainDanRer5Link.txt.gz 2010-12-10 12:30 98M
chainDanRer5Link.sql 2010-12-10 12:30 1.5K
chainDanRer5.txt.gz 2010-12-10 11:02 19M
chainDanRer5.sql 2010-12-10 11:02 1.8K
chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G
chainCerSim1Link.sql 2013-01-29 23:26 1.6K
chainCerSim1.txt.gz 2013-01-29 23:32 253M
chainCerSim1.sql 2013-01-29 23:32 1.7K
chainCanFam2Link.txt.gz 2010-12-10 11:01 330M
chainCanFam2Link.sql 2010-12-10 11:00 1.5K
chainCanFam2.txt.gz 2010-12-10 11:51 39M
chainCanFam2.sql 2010-12-10 11:51 1.8K
chainCalJac3Link.txt.gz 2010-12-10 11:05 758M
chainCalJac3Link.sql 2010-12-10 11:03 1.5K
chainCalJac3.txt.gz 2010-12-10 11:21 272M
chainCalJac3.sql 2010-12-10 11:20 1.6K
chainBosTau7Link.txt.gz 2012-06-16 19:57 776M
chainBosTau7Link.sql 2012-06-16 19:47 1.5K
chainBosTau7.txt.gz 2012-06-16 20:30 250M
chainBosTau7.sql 2012-06-16 20:27 1.6K
chainAilMel1Link.txt.gz 2010-12-10 12:31 213M
chainAilMel1Link.sql 2010-12-10 12:31 1.5K
chainAilMel1.txt.gz 2010-12-10 11:02 33M
chainAilMel1.sql 2010-12-10 11:02 1.6K
blastHg18KG.txt.gz 2009-07-20 16:02 3.6M
blastHg18KG.sql 2009-07-20 16:02 2.1K
bigFiles.txt.gz 2024-11-17 03:26 33
bigFiles.sql 2024-11-17 03:26 1.4K
augustusGene.txt.gz 2015-07-26 16:46 2.0M
augustusGene.sql 2015-07-26 16:46 1.9K
all_mrna.txt.gz 2020-08-19 18:14 61K
all_mrna.sql 2020-08-19 18:14 2.1K
all_est.txt.gz 2011-04-18 07:18 17K
all_est.sql 2011-04-18 07:18 2.0K