This directory contains a dump of the UCSC genome annotation database for the March 2006 assembly of the cat genome (felCat3, Broad Release 3). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the Broad Institute at MIT and Harvard. For more information on the cat genome, see the project website: http://www.broad.mit.edu/mammals/ Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/felCat3/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory - bigFiles.txt.gz 2024-09-01 03:28 33 extFile.txt.gz 2007-06-21 10:45 83 grp.txt.gz 2014-03-02 03:40 208 history.txt.gz 2010-07-04 15:39 530 hgFindSpec.txt.gz 2023-03-28 13:49 1.0K nscanPep.sql 2007-03-14 11:24 1.1K geneidPep.sql 2007-02-15 09:38 1.1K genscanPep.sql 2007-01-19 17:02 1.2K contigAcc.sql 2007-01-19 17:00 1.2K chromInfo.sql 2007-01-19 17:00 1.2K extFile.sql 2007-06-21 10:45 1.3K ensPep.sql 2012-10-21 03:37 1.3K microsat.sql 2007-01-19 17:02 1.3K ensemblSource.sql 2012-10-21 03:37 1.4K bigFiles.sql 2024-09-01 03:28 1.4K grp.sql 2014-03-02 03:40 1.4K ensemblToGeneName.sql 2012-10-21 03:37 1.4K chainMm8Link.sql 2007-01-19 16:55 1.4K multiz4way.sql 2007-06-21 10:45 1.4K chainCanFam2Link.sql 2007-01-19 16:35 1.4K tableDescriptions.sql 2024-08-31 02:03 1.4K ensGtp.sql 2012-10-21 03:37 1.4K phastConsElements4way.sql 2007-06-21 10:48 1.4K genscanSubopt.sql 2007-01-19 17:02 1.5K multiz4waySummary.sql 2007-06-21 10:47 1.5K gap.sql 2007-01-19 17:00 1.5K chainHg19Link.sql 2009-09-20 09:21 1.5K history.sql 2010-07-04 15:39 1.6K multiz4wayFrames.sql 2007-06-21 10:46 1.6K tableList.sql 2024-09-01 03:28 1.6K genscan.sql 2007-01-19 17:02 1.6K gold.sql 2007-01-19 17:02 1.6K gbLoaded.sql 2020-08-21 19:02 1.6K cpgIslandExt.sql 2007-01-19 17:00 1.6K chainMm8.sql 2007-01-19 16:54 1.6K chainCanFam2.sql 2007-01-19 16:34 1.7K ensemblGeneScaffold.sql 2012-10-21 03:37 1.7K tRNAs.sql 2012-04-22 23:54 1.7K cpgIslandExtUnmasked.sql 2014-06-01 12:51 1.7K gc5Base.sql 2007-01-19 17:01 1.7K quality.sql 2007-01-19 17:06 1.7K refFlat.sql 2020-08-21 18:40 1.7K phastCons4way.sql 2007-06-21 10:47 1.7K xenoRefFlat.sql 2020-08-21 18:44 1.7K hgFindSpec.sql 2023-03-28 13:49 1.8K estOrientInfo.sql 2016-05-15 08:36 1.8K chainHg19.sql 2009-09-20 09:24 1.8K mrnaOrientInfo.sql 2020-08-21 18:44 1.8K rmsk.sql 2007-01-19 17:08 1.9K geneid.sql 2007-02-15 09:38 1.9K ensGene.sql 2012-10-21 03:37 1.9K sgpGene.sql 2007-12-22 12:46 1.9K refGene.sql 2020-08-21 18:40 1.9K xenoRefGene.sql 2020-08-21 18:41 2.0K simpleRepeat.sql 2007-01-19 17:10 2.0K nscanGene.sql 2007-03-14 11:24 2.0K trackDb.sql 2023-03-28 13:49 2.1K all_est.sql 2016-05-15 08:36 2.1K xenoMrna.sql 2016-02-21 15:32 2.1K intronEst.sql 2016-05-15 08:36 2.1K all_mrna.sql 2020-08-21 18:26 2.1K refSeqAli.sql 2020-08-21 18:45 2.1K xenoRefSeqAli.sql 2020-08-21 19:00 2.1K netMm8.sql 2007-01-19 17:05 2.2K netCanFam2.sql 2007-01-19 17:02 2.2K blastHg18KG.sql 2009-12-20 11:32 2.3K netHg19.sql 2009-09-20 09:24 2.3K tableList.txt.gz 2024-09-01 03:28 3.5K tableDescriptions.txt.gz 2024-08-31 02:03 6.0K estOrientInfo.txt.gz 2016-05-15 08:36 13K intronEst.txt.gz 2016-05-15 08:36 15K multiz4waySummary.txt.gz 2007-06-21 10:47 23K refFlat.txt.gz 2020-08-21 18:40 32K refGene.txt.gz 2020-08-21 18:40 35K trackDb.txt.gz 2023-03-28 13:49 39K all_est.txt.gz 2016-05-15 08:36 40K gbLoaded.txt.gz 2020-08-21 19:02 43K refSeqAli.txt.gz 2020-08-21 18:45 44K mrnaOrientInfo.txt.gz 2020-08-21 18:44 67K ensemblSource.txt.gz 2012-10-21 03:37 68K tRNAs.txt.gz 2012-04-22 23:54 69K ensemblToGeneName.txt.gz 2012-10-21 03:37 104K ensGtp.txt.gz 2012-10-21 03:37 180K all_mrna.txt.gz 2020-08-21 18:26 232K microsat.txt.gz 2007-01-19 17:02 658K ensemblGeneScaffold.txt.gz 2012-10-21 03:37 818K cpgIslandExt.txt.gz 2007-01-19 17:00 1.1M chromInfo.txt.gz 2007-01-19 17:00 1.1M nscanGene.txt.gz 2007-03-14 11:24 1.5M cpgIslandExtUnmasked.txt.gz 2014-06-01 12:51 1.5M sgpGene.txt.gz 2007-12-22 12:46 1.7M ensGene.txt.gz 2012-10-21 03:37 1.7M blastHg18KG.txt.gz 2009-12-20 11:32 1.9M genscan.txt.gz 2007-01-19 17:02 2.7M phastConsElements4way.txt.gz 2007-06-21 10:49 3.3M contigAcc.txt.gz 2007-01-19 17:00 4.0M nscanPep.txt.gz 2007-03-14 11:24 4.0M ensPep.txt.gz 2012-10-21 03:37 4.0M geneid.txt.gz 2007-02-15 09:38 5.4M genscanSubopt.txt.gz 2007-01-19 17:02 5.8M multiz4wayFrames.txt.gz 2007-06-21 10:47 5.8M gap.txt.gz 2007-01-19 17:00 6.7M geneidPep.txt.gz 2007-02-15 09:38 7.7M simpleRepeat.txt.gz 2007-01-19 17:10 8.6M genscanPep.txt.gz 2007-01-19 17:02 8.6M gold.txt.gz 2007-01-19 17:02 11M gc5Base.txt.gz 2007-01-19 17:02 14M chainMm8.txt.gz 2007-01-19 16:54 28M xenoRefFlat.txt.gz 2020-08-21 18:44 32M chainHg19.txt.gz 2009-09-20 09:24 35M xenoRefGene.txt.gz 2020-08-21 18:41 36M xenoRefSeqAli.txt.gz 2020-08-21 19:00 37M netMm8.txt.gz 2007-01-19 17:06 41M phastCons4way.txt.gz 2007-06-21 10:48 49M netCanFam2.txt.gz 2007-01-19 17:03 55M netHg19.txt.gz 2009-09-20 09:24 55M multiz4way.txt.gz 2007-06-21 10:46 61M quality.txt.gz 2007-01-19 17:08 70M rmsk.txt.gz 2007-01-19 17:09 77M chainCanFam2.txt.gz 2007-01-19 16:35 80M chainMm8Link.txt.gz 2007-01-19 16:57 237M xenoMrna.txt.gz 2016-02-21 15:34 294M chainHg19Link.txt.gz 2009-09-20 09:22 341M chainCanFam2Link.txt.gz 2007-01-19 16:41 522M