This directory contains a dump of the UCSC genome annotation database for the March 2006 assembly of the cat genome (felCat3, Broad Release 3). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the Broad Institute at MIT and Harvard. For more information on the cat genome, see the project website: http://www.broad.mit.edu/mammals/ Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/felCat3/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory - chainCanFam2Link.txt.gz 2007-01-19 16:41 522M chainHg19Link.txt.gz 2009-09-20 09:22 341M xenoMrna.txt.gz 2016-02-21 15:34 294M chainMm8Link.txt.gz 2007-01-19 16:57 237M chainCanFam2.txt.gz 2007-01-19 16:35 80M rmsk.txt.gz 2007-01-19 17:09 77M quality.txt.gz 2007-01-19 17:08 70M multiz4way.txt.gz 2007-06-21 10:46 61M netHg19.txt.gz 2009-09-20 09:24 55M netCanFam2.txt.gz 2007-01-19 17:03 55M phastCons4way.txt.gz 2007-06-21 10:48 49M netMm8.txt.gz 2007-01-19 17:06 41M xenoRefSeqAli.txt.gz 2020-08-21 19:00 37M xenoRefGene.txt.gz 2020-08-21 18:41 36M chainHg19.txt.gz 2009-09-20 09:24 35M xenoRefFlat.txt.gz 2020-08-21 18:44 32M chainMm8.txt.gz 2007-01-19 16:54 28M gc5Base.txt.gz 2007-01-19 17:02 14M gold.txt.gz 2007-01-19 17:02 11M genscanPep.txt.gz 2007-01-19 17:02 8.6M simpleRepeat.txt.gz 2007-01-19 17:10 8.6M geneidPep.txt.gz 2007-02-15 09:38 7.7M gap.txt.gz 2007-01-19 17:00 6.7M multiz4wayFrames.txt.gz 2007-06-21 10:47 5.8M genscanSubopt.txt.gz 2007-01-19 17:02 5.8M geneid.txt.gz 2007-02-15 09:38 5.4M ensPep.txt.gz 2012-10-21 03:37 4.0M nscanPep.txt.gz 2007-03-14 11:24 4.0M contigAcc.txt.gz 2007-01-19 17:00 4.0M phastConsElements4way.txt.gz 2007-06-21 10:49 3.3M genscan.txt.gz 2007-01-19 17:02 2.7M blastHg18KG.txt.gz 2009-12-20 11:32 1.9M ensGene.txt.gz 2012-10-21 03:37 1.7M sgpGene.txt.gz 2007-12-22 12:46 1.7M cpgIslandExtUnmasked.txt.gz 2014-06-01 12:51 1.5M nscanGene.txt.gz 2007-03-14 11:24 1.5M chromInfo.txt.gz 2007-01-19 17:00 1.1M cpgIslandExt.txt.gz 2007-01-19 17:00 1.1M ensemblGeneScaffold.txt.gz 2012-10-21 03:37 818K microsat.txt.gz 2007-01-19 17:02 658K all_mrna.txt.gz 2020-08-21 18:26 232K ensGtp.txt.gz 2012-10-21 03:37 180K ensemblToGeneName.txt.gz 2012-10-21 03:37 104K tRNAs.txt.gz 2012-04-22 23:54 69K ensemblSource.txt.gz 2012-10-21 03:37 68K mrnaOrientInfo.txt.gz 2020-08-21 18:44 67K refSeqAli.txt.gz 2020-08-21 18:45 44K gbLoaded.txt.gz 2020-08-21 19:02 43K all_est.txt.gz 2016-05-15 08:36 40K trackDb.txt.gz 2023-03-28 13:49 39K refGene.txt.gz 2020-08-21 18:40 35K refFlat.txt.gz 2020-08-21 18:40 32K multiz4waySummary.txt.gz 2007-06-21 10:47 23K intronEst.txt.gz 2016-05-15 08:36 15K estOrientInfo.txt.gz 2016-05-15 08:36 13K tableDescriptions.txt.gz 2024-10-05 02:03 6.0K tableList.txt.gz 2024-10-06 03:30 3.5K netHg19.sql 2009-09-20 09:24 2.3K blastHg18KG.sql 2009-12-20 11:32 2.3K netCanFam2.sql 2007-01-19 17:02 2.2K netMm8.sql 2007-01-19 17:05 2.2K xenoRefSeqAli.sql 2020-08-21 19:00 2.1K refSeqAli.sql 2020-08-21 18:45 2.1K all_mrna.sql 2020-08-21 18:26 2.1K intronEst.sql 2016-05-15 08:36 2.1K xenoMrna.sql 2016-02-21 15:32 2.1K all_est.sql 2016-05-15 08:36 2.1K trackDb.sql 2023-03-28 13:49 2.1K nscanGene.sql 2007-03-14 11:24 2.0K simpleRepeat.sql 2007-01-19 17:10 2.0K xenoRefGene.sql 2020-08-21 18:41 2.0K refGene.sql 2020-08-21 18:40 1.9K sgpGene.sql 2007-12-22 12:46 1.9K ensGene.sql 2012-10-21 03:37 1.9K geneid.sql 2007-02-15 09:38 1.9K rmsk.sql 2007-01-19 17:08 1.9K mrnaOrientInfo.sql 2020-08-21 18:44 1.8K chainHg19.sql 2009-09-20 09:24 1.8K estOrientInfo.sql 2016-05-15 08:36 1.8K hgFindSpec.sql 2023-03-28 13:49 1.8K xenoRefFlat.sql 2020-08-21 18:44 1.7K phastCons4way.sql 2007-06-21 10:47 1.7K refFlat.sql 2020-08-21 18:40 1.7K quality.sql 2007-01-19 17:06 1.7K gc5Base.sql 2007-01-19 17:01 1.7K cpgIslandExtUnmasked.sql 2014-06-01 12:51 1.7K tRNAs.sql 2012-04-22 23:54 1.7K ensemblGeneScaffold.sql 2012-10-21 03:37 1.7K chainCanFam2.sql 2007-01-19 16:34 1.7K chainMm8.sql 2007-01-19 16:54 1.6K cpgIslandExt.sql 2007-01-19 17:00 1.6K gbLoaded.sql 2020-08-21 19:02 1.6K gold.sql 2007-01-19 17:02 1.6K genscan.sql 2007-01-19 17:02 1.6K tableList.sql 2024-10-06 03:30 1.6K multiz4wayFrames.sql 2007-06-21 10:46 1.6K history.sql 2010-07-04 15:39 1.6K chainHg19Link.sql 2009-09-20 09:21 1.5K gap.sql 2007-01-19 17:00 1.5K multiz4waySummary.sql 2007-06-21 10:47 1.5K genscanSubopt.sql 2007-01-19 17:02 1.5K phastConsElements4way.sql 2007-06-21 10:48 1.4K ensGtp.sql 2012-10-21 03:37 1.4K tableDescriptions.sql 2024-10-05 02:03 1.4K chainCanFam2Link.sql 2007-01-19 16:35 1.4K multiz4way.sql 2007-06-21 10:45 1.4K chainMm8Link.sql 2007-01-19 16:55 1.4K ensemblToGeneName.sql 2012-10-21 03:37 1.4K grp.sql 2014-03-02 03:40 1.4K bigFiles.sql 2024-10-06 03:30 1.4K ensemblSource.sql 2012-10-21 03:37 1.4K microsat.sql 2007-01-19 17:02 1.3K ensPep.sql 2012-10-21 03:37 1.3K extFile.sql 2007-06-21 10:45 1.3K chromInfo.sql 2007-01-19 17:00 1.2K contigAcc.sql 2007-01-19 17:00 1.2K genscanPep.sql 2007-01-19 17:02 1.2K geneidPep.sql 2007-02-15 09:38 1.1K nscanPep.sql 2007-03-14 11:24 1.1K hgFindSpec.txt.gz 2023-03-28 13:49 1.0K history.txt.gz 2010-07-04 15:39 530 grp.txt.gz 2014-03-02 03:40 208 extFile.txt.gz 2007-06-21 10:45 83 bigFiles.txt.gz 2024-10-06 03:30 33