This directory contains a dump of the UCSC genome annotation
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1)
of the C. intestinalis genome from the US DOE Joint Genome
Institute (JGI).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ci1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
To view restrictions on the use of the v1.0 data, see the JGI data
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-17 03:31 33
extFile.txt.gz 2004-07-15 15:41 115
grp.txt.gz 2014-03-02 03:40 223
jgiPep.sql 2013-10-01 12:48 318
gbDelete_tmp.sql 2013-10-01 12:48 322
chromInfo.sql 2013-10-01 12:48 392
extFile.sql 2013-10-01 12:48 441
history.sql 2013-10-01 12:48 533
seq.sql 2013-10-01 12:48 586
hgFindSpec.txt.gz 2023-03-28 13:47 699
gap.sql 2013-10-01 12:48 704
gc5Base.sql 2013-10-01 12:48 887
history.txt.gz 2004-07-15 15:42 934
jgiGene.sql 2013-10-01 12:48 1.0K
rmsk.sql 2013-10-01 12:48 1.0K
snapGene.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.1K
blastHg16KG.sql 2013-10-01 12:48 1.3K
grp.sql 2014-03-02 03:40 1.4K
bigFiles.sql 2024-11-17 03:31 1.4K
blatCioSav1.sql 2013-10-01 12:48 1.4K
tableDescriptions.sql 2024-11-16 02:03 1.4K
chromAlias.sql 2016-09-15 17:56 1.4K
microsat.sql 2015-08-23 12:42 1.5K
tableList.sql 2024-11-17 03:31 1.6K
microsat.txt.gz 2015-08-23 12:42 1.6K
gbLoaded.sql 2020-08-21 06:59 1.7K
hgFindSpec.sql 2023-03-28 13:47 1.8K
refGene.sql 2020-08-21 06:44 1.8K
xenoRefGene.sql 2020-08-21 06:59 1.8K
refFlat.sql 2020-08-21 06:44 1.9K
xenoRefFlat.sql 2020-08-21 06:59 1.9K
estOrientInfo.sql 2016-06-05 09:30 1.9K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
trackDb.sql 2023-03-28 13:47 2.1K
tableList.txt.gz 2024-11-17 03:31 2.3K
all_mrna.sql 2020-08-21 06:44 2.4K
xenoMrna.sql 2020-08-21 06:44 2.4K
all_est.sql 2016-06-05 09:29 2.4K
intronEst.sql 2016-06-05 09:29 2.4K
refSeqAli.sql 2019-07-28 04:38 2.4K
xenoRefSeqAli.sql 2020-08-21 06:59 2.4K
tableDescriptions.txt.gz 2024-11-16 02:03 4.4K
trackDb.txt.gz 2023-03-28 13:47 10K
chromAlias.txt.gz 2016-09-15 17:56 12K
chromInfo.txt.gz 2004-07-15 15:40 21K
gap.txt.gz 2004-07-15 15:41 61K
refGene.txt.gz 2020-08-21 06:44 72K
refFlat.txt.gz 2020-08-21 06:44 78K
refSeqAli.txt.gz 2019-07-28 04:38 95K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
gbLoaded.txt.gz 2020-08-21 06:59 224K
seq.txt.gz 2004-07-15 15:44 490K
gc5Base.txt.gz 2004-07-15 15:42 607K
all_mrna.txt.gz 2020-08-21 06:44 675K
simpleRepeat.txt.gz 2004-07-15 15:44 790K
jgiGene.txt.gz 2004-07-15 15:42 1.0M
blastHg16KG.txt.gz 2004-09-28 10:06 2.0M
snapGene.txt.gz 2004-07-15 15:44 2.0M
rmsk.txt.gz 2004-07-15 15:44 3.2M
jgiPep.txt.gz 2004-07-15 15:43 3.5M
xenoRefGene.txt.gz 2020-08-21 06:59 7.8M
xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M
blatCioSav1.txt.gz 2004-07-15 15:40 9.2M
xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M
estOrientInfo.txt.gz 2016-06-05 09:30 12M
intronEst.txt.gz 2016-06-05 09:29 27M
all_est.txt.gz 2016-06-05 09:29 42M
xenoMrna.txt.gz 2020-08-21 06:44 111M