This directory contains a dump of the UCSC genome annotation 
database for the Dec. 2002 v.1.0 assembly (UCSC version ci1) 
of the C. intestinalis genome from the US DOE Joint Genome 
Institute (JGI). 

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=ci1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/ci1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the annotations in this directory are freely available for public use.

To view restrictions on the use of the v1.0 data, see the JGI data 
release policy at http://genome.jgi-psf.org/ciona4/ciona4.download.html.
      Name                     Last modified      Size  Description
Parent Directory - xenoMrna.txt.gz 2020-08-21 06:44 111M all_est.txt.gz 2016-06-05 09:29 42M intronEst.txt.gz 2016-06-05 09:29 27M estOrientInfo.txt.gz 2016-06-05 09:30 12M xenoRefSeqAli.txt.gz 2020-08-21 06:59 11M blatCioSav1.txt.gz 2004-07-15 15:40 9.2M xenoRefFlat.txt.gz 2020-08-21 06:59 9.1M xenoRefGene.txt.gz 2020-08-21 06:59 7.8M jgiPep.txt.gz 2004-07-15 15:43 3.5M rmsk.txt.gz 2004-07-15 15:44 3.2M snapGene.txt.gz 2004-07-15 15:44 2.0M blastHg16KG.txt.gz 2004-09-28 10:06 2.0M jgiGene.txt.gz 2004-07-15 15:42 1.0M simpleRepeat.txt.gz 2004-07-15 15:44 790K all_mrna.txt.gz 2020-08-21 06:44 675K gc5Base.txt.gz 2004-07-15 15:42 607K seq.txt.gz 2004-07-15 15:44 490K gbLoaded.txt.gz 2020-08-21 06:59 224K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K mrnaOrientInfo.txt.gz 2020-08-21 06:44 139K refSeqAli.txt.gz 2019-07-28 04:38 95K refFlat.txt.gz 2020-08-21 06:44 78K refGene.txt.gz 2020-08-21 06:44 72K gap.txt.gz 2004-07-15 15:41 61K chromInfo.txt.gz 2004-07-15 15:40 21K chromAlias.txt.gz 2016-09-15 17:56 12K trackDb.txt.gz 2023-03-28 13:47 10K tableDescriptions.txt.gz 2024-05-18 02:03 4.4K xenoRefSeqAli.sql 2020-08-21 06:59 2.4K refSeqAli.sql 2019-07-28 04:38 2.4K intronEst.sql 2016-06-05 09:29 2.4K all_est.sql 2016-06-05 09:29 2.4K xenoMrna.sql 2020-08-21 06:44 2.4K all_mrna.sql 2020-08-21 06:44 2.4K tableList.txt.gz 2024-05-19 03:21 2.3K trackDb.sql 2023-03-28 13:47 2.1K mrnaOrientInfo.sql 2020-08-21 06:44 1.9K estOrientInfo.sql 2016-06-05 09:30 1.9K xenoRefFlat.sql 2020-08-21 06:59 1.9K refFlat.sql 2020-08-21 06:44 1.9K xenoRefGene.sql 2020-08-21 06:59 1.8K refGene.sql 2020-08-21 06:44 1.8K hgFindSpec.sql 2023-03-28 13:47 1.8K gbLoaded.sql 2020-08-21 06:59 1.7K microsat.txt.gz 2015-08-23 12:42 1.6K tableList.sql 2024-05-19 03:21 1.6K microsat.sql 2015-08-23 12:42 1.5K chromAlias.sql 2016-09-15 17:56 1.4K tableDescriptions.sql 2024-05-18 02:03 1.4K blatCioSav1.sql 2013-10-01 12:48 1.4K bigFiles.sql 2024-05-19 03:21 1.4K grp.sql 2014-03-02 03:40 1.4K blastHg16KG.sql 2013-10-01 12:48 1.3K simpleRepeat.sql 2013-10-01 12:48 1.1K snapGene.sql 2013-10-01 12:48 1.0K rmsk.sql 2013-10-01 12:48 1.0K jgiGene.sql 2013-10-01 12:48 1.0K history.txt.gz 2004-07-15 15:42 934 gc5Base.sql 2013-10-01 12:48 887 gap.sql 2013-10-01 12:48 704 hgFindSpec.txt.gz 2023-03-28 13:47 699 seq.sql 2013-10-01 12:48 586 history.sql 2013-10-01 12:48 533 extFile.sql 2013-10-01 12:48 441 chromInfo.sql 2013-10-01 12:48 392 gbDelete_tmp.sql 2013-10-01 12:48 322 jgiPep.sql 2013-10-01 12:48 318 grp.txt.gz 2014-03-02 03:40 223 extFile.txt.gz 2004-07-15 15:41 115 bigFiles.txt.gz 2024-05-19 03:21 33