This directory contains reciprocal-best netted chains for xenTro9-monDom5.

 - xenTro9.monDom5.rbest.net.gz: xenTro9-referenced recip.best net to monDom5.
 - xenTro9.monDom5.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from xenTro9 to monDom5 through the recip.best net.

 - monDom5.xenTro9.rbest.net.gz: monDom5-referenced recip.best net.
 - monDom5.xenTro9.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/xenTro9.monDom5.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      axtRBestNet/                   2017-04-07 23:20    -   
      md5sum.txt                     2017-04-07 10:02  256   
      monDom5.xenTro9.rbest.chain.gz 2017-04-07 10:02  4.7M  
      monDom5.xenTro9.rbest.net.gz   2017-04-07 10:02  8.4M  
      xenTro9.monDom5.rbest.chain.gz 2017-04-07 10:02  4.7M  
      xenTro9.monDom5.rbest.net.gz   2017-04-07 10:02  7.9M