This directory contains the annotation database tables for the Feb. 2004 freeze of the Tetraodon nigroviridis version 7 (V7) genome assembly (tetNig1) provided by Genoscope (http://www.genoscope.cns.fr/). This assembly is the result of a collaboration between Genoscope and the Broad Institute of MIT and Harvard. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=tetNig1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ----------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/tetNig1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the annotations in this directory are freely usable for any purpose. The Tetraodon sequence has been freely provided by Genoscope before publication for use in the UCSC Genome Browser with the following understanding: 1. The data may be freely downloaded, used in analyses, and repackaged in databases. 2. Users are free to use the data in scientific papers analyzing particular genes and regions, provided that the Genoscope is properly acknowledged. 3. Genoscope reserves the right to publish the initial large-scale analyses of the dataset, including large-scale identification of regions of evolutionary conservation and large-scale genomic assembly. Large-scale refers to regions with size on the order of a Tetraodon chromosome (that is, 5 Mb or more). 4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory - bigFiles.txt.gz 2024-11-17 03:31 33 bigFiles.sql 2024-11-17 03:31 1.4K tableList.txt.gz 2024-11-17 03:31 17K tableList.sql 2024-11-17 03:31 1.6K tableDescriptions.txt.gz 2024-11-16 02:04 5.6K tableDescriptions.sql 2024-11-16 02:04 1.4K hgFindSpec.txt.gz 2023-03-28 13:53 1.1K hgFindSpec.sql 2023-03-28 13:53 1.8K trackDb.txt.gz 2023-03-28 13:53 24K trackDb.sql 2023-03-28 13:53 2.1K gbLoaded.txt.gz 2020-09-02 07:33 15K gbLoaded.sql 2020-09-02 07:33 1.6K xenoRefSeqAli.txt.gz 2020-09-02 07:33 31M xenoRefSeqAli.sql 2020-09-02 07:33 2.1K xenoRefFlat.txt.gz 2020-09-02 07:33 31M xenoRefFlat.sql 2020-09-02 07:33 1.7K xenoRefGene.txt.gz 2020-09-02 07:33 34M xenoRefGene.sql 2020-09-02 07:33 2.0K chr4_mrna.txt.gz 2019-10-20 12:03 57K chr4_mrna.sql 2019-10-20 12:03 2.1K mrnaOrientInfo.txt.gz 2019-10-20 12:03 887K mrnaOrientInfo.sql 2019-10-20 12:03 1.8K all_mrna.txt.gz 2019-10-20 12:02 4.1M all_mrna.sql 2019-10-20 12:02 2.1K chr16_mrna.txt.gz 2016-12-04 09:06 148K chr16_mrna.sql 2016-12-04 09:06 2.1K chr9_mrna.txt.gz 2016-12-04 09:05 121K chr9_mrna.sql 2016-12-04 09:05 2.1K chr1_random_mrna.txt.gz 2016-05-15 11:40 40K chr1_random_mrna.sql 2016-05-15 11:40 2.1K chr21_mrna.txt.gz 2016-05-15 11:40 71K chr21_mrna.sql 2016-05-15 11:40 2.1K chr11_mrna.txt.gz 2016-05-15 11:40 93K chr11_mrna.sql 2016-05-15 11:40 2.1K chr10_mrna.txt.gz 2016-05-15 11:40 116K chr10_mrna.sql 2016-05-15 11:40 2.1K chr1_mrna.txt.gz 2016-05-15 11:40 180K chr1_mrna.sql 2016-05-15 11:40 2.1K chrUn_random_mrna.txt.gz 2016-05-15 11:40 1.5M chrUn_random_mrna.sql 2016-05-15 11:40 2.1K chr15_random_mrna.txt.gz 2016-05-15 11:40 29K chr15_random_mrna.sql 2016-05-15 11:40 2.1K chr21_random_mrna.txt.gz 2016-05-15 11:40 32K chr21_random_mrna.sql 2016-05-15 11:40 2.1K chr13_mrna.txt.gz 2016-05-15 11:40 154K chr13_mrna.sql 2016-05-15 11:40 2.1K chr12_mrna.txt.gz 2016-05-15 11:40 112K chr12_mrna.sql 2016-05-15 11:40 2.1K chr8_mrna.txt.gz 2016-05-15 11:40 120K chr8_mrna.sql 2016-05-15 11:40 2.1K chr7_mrna.txt.gz 2016-05-15 11:40 136K chr7_mrna.sql 2016-05-15 11:40 2.1K chr6_mrna.txt.gz 2016-05-15 11:40 64K chr6_mrna.sql 2016-05-15 11:40 2.1K chr3_random_mrna.txt.gz 2016-05-15 11:40 1.8K chr3_random_mrna.sql 2016-05-15 11:40 2.1K chr2_random_mrna.txt.gz 2016-05-15 11:40 18K chr2_random_mrna.sql 2016-05-15 11:40 2.1K chr20_mrna.txt.gz 2016-05-15 11:40 11K chr20_mrna.sql 2016-05-15 11:40 2.1K chr19_mrna.txt.gz 2016-05-15 11:40 35K chr19_mrna.sql 2016-05-15 11:40 2.1K chr18_mrna.txt.gz 2016-05-15 11:40 150K chr18_mrna.sql 2016-05-15 11:40 2.1K chr17_mrna.txt.gz 2016-05-15 11:40 79K chr17_mrna.sql 2016-05-15 11:40 2.1K chr15_mrna.txt.gz 2016-05-15 11:40 94K chr15_mrna.sql 2016-05-15 11:40 2.1K chr14_mrna.txt.gz 2016-05-15 11:40 133K chr14_mrna.sql 2016-05-15 11:40 2.1K chr5_mrna.txt.gz 2016-05-15 11:40 196K chr5_mrna.sql 2016-05-15 11:40 2.1K chr3_mrna.txt.gz 2016-05-15 11:40 306K chr3_mrna.sql 2016-05-15 11:40 2.1K chr2_mrna.txt.gz 2016-05-15 11:40 199K chr2_mrna.sql 2016-05-15 11:40 2.1K xenoMrna.txt.gz 2016-02-28 07:34 274M xenoMrna.sql 2016-02-28 07:33 2.4K microsat.txt.gz 2015-08-24 02:33 235K microsat.sql 2015-08-24 02:33 1.5K augustusGene.txt.gz 2015-07-26 17:28 3.1M augustusGene.sql 2015-07-26 17:28 1.9K grp.txt.gz 2014-03-02 04:18 223 grp.sql 2014-03-02 04:18 1.4K simpleRepeat.sql 2013-10-01 12:48 1.1K netSelf.sql 2013-10-01 12:48 1.3K hoxGenes.sql 2013-10-01 12:48 750 history.sql 2013-10-01 12:48 537 genscan.sql 2013-10-01 12:48 748 geneidPep.sql 2013-10-01 12:48 328 geneid.sql 2013-10-01 12:48 1.0K gc5Base.sql 2013-10-01 12:48 891 gaze.sql 2013-10-01 12:48 742 ecoresHg17.sql 2013-10-01 12:48 754 cytokines.sql 2013-10-01 12:48 752 contigAcc.sql 2013-10-01 12:48 343 chromInfo.sql 2013-10-01 12:48 396 chrUn_random_rmsk.sql 2013-10-01 12:48 1.1K chrUn_random_gold.sql 2013-10-01 12:48 797 chrUn_random_gap.sql 2013-10-01 12:48 720 chrUn_random_chainSelfLink.sql 2013-10-01 12:48 593 chrUn_random_chainSelf.sql 2013-10-01 12:48 870 chr21_rmsk.sql 2013-10-01 12:48 1.0K chr21_random_rmsk.sql 2013-10-01 12:48 1.1K chr21_random_gold.sql 2013-10-01 12:48 797 chr21_random_gap.sql 2013-10-01 12:48 720 chr21_random_chainSelfLink.sql 2013-10-01 12:48 593 chr21_random_chainSelf.sql 2013-10-01 12:48 870 chr21_gold.sql 2013-10-01 12:48 783 chr21_gap.sql 2013-10-01 12:48 706 chr21_chainSelfLink.sql 2013-10-01 12:48 579 chr21_chainSelf.sql 2013-10-01 12:48 856 chr20_rmsk.sql 2013-10-01 12:48 1.0K chr20_gold.sql 2013-10-01 12:48 783 chr20_gap.sql 2013-10-01 12:48 706 chr20_chainSelfLink.sql 2013-10-01 12:48 579 chr20_chainSelf.sql 2013-10-01 12:48 856 chr19_rmsk.sql 2013-10-01 12:48 1.0K chr19_gold.sql 2013-10-01 12:48 783 chr19_gap.sql 2013-10-01 12:48 706 chr19_chainSelfLink.sql 2013-10-01 12:48 579 chr19_chainSelf.sql 2013-10-01 12:48 856 chr18_rmsk.sql 2013-10-01 12:48 1.0K chr18_gold.sql 2013-10-01 12:48 783 chr18_gap.sql 2013-10-01 12:48 706 chr18_chainSelfLink.sql 2013-10-01 12:48 579 chr18_chainSelf.sql 2013-10-01 12:48 856 chr17_rmsk.sql 2013-10-01 12:48 1.0K chr17_gold.sql 2013-10-01 12:48 783 chr17_gap.sql 2013-10-01 12:48 706 chr17_chainSelfLink.sql 2013-10-01 12:48 579 chr17_chainSelf.sql 2013-10-01 12:48 856 chr16_rmsk.sql 2013-10-01 12:48 1.0K chr16_gold.sql 2013-10-01 12:48 783 chr16_chainSelfLink.sql 2013-10-01 12:48 579 chr16_chainSelf.sql 2013-10-01 12:48 856 chr15_rmsk.sql 2013-10-01 12:48 1.0K chr15_random_rmsk.sql 2013-10-01 12:48 1.1K chr15_random_gold.sql 2013-10-01 12:48 797 chr15_random_gap.sql 2013-10-01 12:48 720 chr15_random_chainSelfLink.sql 2013-10-01 12:48 593 chr15_random_chainSelf.sql 2013-10-01 12:48 870 chr15_gold.sql 2013-10-01 12:48 783 chr13_rmsk.sql 2013-10-01 12:48 1.0K chr9_rmsk.sql 2013-10-01 12:48 1.0K chr9_gold.sql 2013-10-01 12:48 781 chr9_gap.sql 2013-10-01 12:48 704 chr9_chainSelfLink.sql 2013-10-01 12:48 577 chr9_chainSelf.sql 2013-10-01 12:48 854 chr8_rmsk.sql 2013-10-01 12:48 1.0K chr8_gold.sql 2013-10-01 12:48 781 chr8_gap.sql 2013-10-01 12:48 704 chr8_chainSelfLink.sql 2013-10-01 12:48 577 chr8_chainSelf.sql 2013-10-01 12:48 854 chr7_rmsk.sql 2013-10-01 12:48 1.0K chr7_gold.sql 2013-10-01 12:48 781 chr7_gap.sql 2013-10-01 12:48 704 chr7_chainSelfLink.sql 2013-10-01 12:48 577 chr7_chainSelf.sql 2013-10-01 12:48 854 chr6_rmsk.sql 2013-10-01 12:48 1.0K chr6_gold.sql 2013-10-01 12:48 781 chr6_gap.sql 2013-10-01 12:48 704 chr6_chainSelfLink.sql 2013-10-01 12:48 577 chr6_chainSelf.sql 2013-10-01 12:48 854 chr5_rmsk.sql 2013-10-01 12:48 1.0K chr5_gold.sql 2013-10-01 12:48 781 chr5_gap.sql 2013-10-01 12:48 704 chr5_chainSelfLink.sql 2013-10-01 12:48 577 chr5_chainSelf.sql 2013-10-01 12:48 854 chr4_rmsk.sql 2013-10-01 12:48 1.0K chr4_gold.sql 2013-10-01 12:48 781 chr4_gap.sql 2013-10-01 12:48 704 chr4_chainSelfLink.sql 2013-10-01 12:48 577 chr4_chainSelf.sql 2013-10-01 12:48 854 chr3_rmsk.sql 2013-10-01 12:48 1.0K chr3_random_rmsk.sql 2013-10-01 12:48 1.1K chr3_random_gold.sql 2013-10-01 12:48 795 chr3_random_gap.sql 2013-10-01 12:48 718 chr3_random_chainSelfLink.sql 2013-10-01 12:48 591 chr3_random_chainSelf.sql 2013-10-01 12:48 868 chr3_gold.sql 2013-10-01 12:48 781 chr3_gap.sql 2013-10-01 12:48 704 chr3_chainSelfLink.sql 2013-10-01 12:48 577 chr3_chainSelf.sql 2013-10-01 12:48 854 chr2_rmsk.sql 2013-10-01 12:48 1.0K chr2_random_rmsk.sql 2013-10-01 12:48 1.1K chr2_random_gold.sql 2013-10-01 12:48 795 chr2_random_gap.sql 2013-10-01 12:48 718 chr2_random_chainSelfLink.sql 2013-10-01 12:48 591 chr2_random_chainSelf.sql 2013-10-01 12:48 868 chr2_gold.sql 2013-10-01 12:48 781 chr2_gap.sql 2013-10-01 12:48 704 chr2_chainSelfLink.sql 2013-10-01 12:48 577 chr2_chainSelf.sql 2013-10-01 12:48 854 chr1_rmsk.sql 2013-10-01 12:48 1.0K chr1_random_rmsk.sql 2013-10-01 12:48 1.1K chr1_random_gold.sql 2013-10-01 12:48 795 chr1_random_gap.sql 2013-10-01 12:48 718 chr1_random_chainSelfLink.sql 2013-10-01 12:48 591 chr1_random_chainSelf.sql 2013-10-01 12:48 868 chr1_gold.sql 2013-10-01 12:48 781 chr1_gap.sql 2013-10-01 12:48 704 chr1_chainSelfLink.sql 2013-10-01 12:48 577 chr1_chainSelf.sql 2013-10-01 12:48 854 chr16_gap.sql 2013-10-01 12:48 706 chr15_gap.sql 2013-10-01 12:48 706 chr15_chainSelfLink.sql 2013-10-01 12:48 579 chr15_chainSelf.sql 2013-10-01 12:48 856 chr14_rmsk.sql 2013-10-01 12:48 1.0K chr14_gold.sql 2013-10-01 12:48 783 chr14_gap.sql 2013-10-01 12:48 706 chr14_chainSelfLink.sql 2013-10-01 12:48 579 chr14_chainSelf.sql 2013-10-01 12:48 856 chr13_gold.sql 2013-10-01 12:48 783 chr13_gap.sql 2013-10-01 12:48 706 chr13_chainSelfLink.sql 2013-10-01 12:48 579 chr13_chainSelf.sql 2013-10-01 12:48 856 chr12_rmsk.sql 2013-10-01 12:48 1.0K chr12_gold.sql 2013-10-01 12:48 783 chr12_gap.sql 2013-10-01 12:48 706 chr12_chainSelfLink.sql 2013-10-01 12:48 579 chr12_chainSelf.sql 2013-10-01 12:48 856 chr11_rmsk.sql 2013-10-01 12:48 1.0K chr11_gold.sql 2013-10-01 12:48 783 chr11_gap.sql 2013-10-01 12:48 706 chr11_chainSelfLink.sql 2013-10-01 12:48 579 chr11_chainSelf.sql 2013-10-01 12:48 856 chr10_rmsk.sql 2013-10-01 12:48 1.0K chr10_gold.sql 2013-10-01 12:48 783 chr10_gap.sql 2013-10-01 12:48 706 chr10_chainSelfLink.sql 2013-10-01 12:48 579 chr10_chainSelf.sql 2013-10-01 12:48 856 blastHg18KG.txt.gz 2009-12-20 16:05 2.8M blastHg18KG.sql 2009-12-20 16:05 2.3K netHg19.txt.gz 2009-10-11 09:05 5.6M netHg19.sql 2009-10-11 09:05 2.3K chainHg19.txt.gz 2009-10-11 09:05 7.8M chainHg19.sql 2009-10-11 09:05 1.8K chainHg19Link.txt.gz 2009-10-11 09:05 47M chainHg19Link.sql 2009-10-11 09:05 1.5K gbDelete_tmp.txt.gz 2009-08-19 15:45 171K gbDelete_tmp.sql 2009-08-19 15:45 1.3K chr3_chainOryLat2.txt.gz 2008-11-16 12:43 490K chr3_chainOryLat2.sql 2008-11-16 12:43 1.7K chr9_chainOryLat2Link.txt.gz 2008-11-16 12:43 2.3M chr9_chainOryLat2Link.sql 2008-11-16 12:43 1.4K chr15_chainOryLat2.txt.gz 2008-11-16 12:43 221K chr15_chainOryLat2.sql 2008-11-16 12:43 1.7K chr14_chainOryLat2.txt.gz 2008-11-16 12:43 239K chr14_chainOryLat2.sql 2008-11-16 12:43 1.7K chr1_random_chainOryLat2Link.txt.gz 2008-11-16 12:43 1.6M 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chr2_random_chainOryLat2.sql 2008-11-16 12:42 1.7K chr21_random_chainOryLat2.txt.gz 2008-11-16 12:42 74K chr21_random_chainOryLat2.sql 2008-11-16 12:42 1.7K chr12_chainOryLat2.txt.gz 2008-11-16 12:42 355K chr12_chainOryLat2.sql 2008-11-16 12:42 1.7K chr8_chainOryLat2.txt.gz 2008-11-16 12:42 293K chr8_chainOryLat2.sql 2008-11-16 12:42 1.7K chr14_chainOryLat2Link.txt.gz 2008-11-16 12:42 1.9M chr14_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr1_chainOryLat2Link.txt.gz 2008-11-16 12:42 4.6M chr11_chainOryLat2.txt.gz 2008-11-16 12:42 291K chr11_chainOryLat2.sql 2008-11-16 12:42 1.7K chr1_random_chainOryLat2.txt.gz 2008-11-16 12:42 228K chr1_random_chainOryLat2.sql 2008-11-16 12:42 1.7K chr1_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr15_random_chainOryLat2.txt.gz 2008-11-16 12:42 92K chr15_random_chainOryLat2.sql 2008-11-16 12:42 1.7K chr2_random_chainOryLat2Link.txt.gz 2008-11-16 12:42 909K chr2_random_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr21_chainOryLat2Link.txt.gz 2008-11-16 12:42 970K chr21_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr3_chainOryLat2Link.txt.gz 2008-11-16 12:42 3.5M chr3_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr20_chainOryLat2.txt.gz 2008-11-16 12:42 30K chr19_chainOryLat2Link.txt.gz 2008-11-16 12:42 1.1M chr19_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr6_chainOryLat2.txt.gz 2008-11-16 12:42 134K chr6_chainOryLat2.sql 2008-11-16 12:42 1.7K chr1_chainOryLat2.txt.gz 2008-11-16 12:42 608K chr1_chainOryLat2.sql 2008-11-16 12:42 1.7K chr20_chainOryLat2.sql 2008-11-16 12:42 1.7K chr16_chainOryLat2Link.txt.gz 2008-11-16 12:42 2.0M chr16_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr4_chainOryLat2Link.txt.gz 2008-11-16 12:42 1.2M chr21_random_chainOryLat2Link.txt.gz 2008-11-16 12:42 589K chr21_random_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr4_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr17_chainOryLat2Link.txt.gz 2008-11-16 12:42 2.3M chr17_chainOryLat2Link.sql 2008-11-16 12:42 1.4K chr9_chainOryLat2.txt.gz 2008-11-16 12:42 218K 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