This directory contains the Feb. 2004 freeze of the Tetraodon
nigroviridis version 7 (V7) genome assembly (tetNig1) provided by
Genoscope (http://www.genoscope.cns.fr/). This assembly is the result
of a collaboration between Genoscope and the Broad Institute of MIT
and Harvard.
Files included in this directory:
- chr*.fa.zip: compressed FASTA sequence of each chromosome.
Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
RepeatMasker January 2004 version with RepBase libraries:
RepBase Update 8.4, RM database version 20040225
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/tetNig1/chromosomes/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any purpose.
The Tetraodon sequence has been freely provided by Genoscope before
publication for use in the UCSC Genome Browser with the following
understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions, provided that the Genoscope is properly acknowledged.
3. Genoscope reserves the right to publish the initial large-scale analyses
of the dataset, including large-scale identification of regions of
evolutionary conservation and large-scale genomic assembly. Large-scale
refers to regions with size on the order of a Tetraodon chromosome (that
is, 5 Mb or more).
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2004-09-08 11:16 1.3K
chrUn_random.fa.zip 2004-09-08 11:15 35M
chr9.fa.zip 2004-09-08 11:13 2.7M
chr8.fa.zip 2004-09-08 11:13 2.6M
chr7.fa.zip 2004-09-08 11:13 2.9M
chr6.fa.zip 2004-09-08 11:13 1.6M
chr5.fa.zip 2004-09-08 11:13 3.1M
chr4.fa.zip 2004-09-08 11:13 1.6M
chr3_random.fa.zip 2004-09-08 11:13 44K
chr3.fa.zip 2004-09-08 11:13 3.8M
chr2_random.fa.zip 2004-09-08 11:12 567K
chr21_random.fa.zip 2004-09-08 11:12 787K
chr21.fa.zip 2004-09-08 11:12 1.4M
chr20.fa.zip 2004-09-08 11:12 705K
chr2.fa.zip 2004-09-08 11:12 5.1M
chr1_random.fa.zip 2004-09-08 11:12 1.2M
chr19.fa.zip 2004-09-08 11:12 1.3M
chr18.fa.zip 2004-09-08 11:12 2.6M
chr17.fa.zip 2004-09-08 11:12 2.9M
chr16.fa.zip 2004-09-08 11:11 2.3M
chr15_random.fa.zip 2004-09-08 11:11 892K
chr15.fa.zip 2004-09-08 11:11 1.9M
chr14.fa.zip 2004-09-08 11:11 2.5M
chr13.fa.zip 2004-09-08 11:11 3.3M
chr12.fa.zip 2004-09-08 11:11 3.3M
chr11.fa.zip 2004-09-08 11:11 3.0M
chr10.fa.zip 2004-09-08 11:11 3.4M
chr1.fa.zip 2004-09-08 11:10 4.5M