This directory contains a dump of the UCSC genome annotation database for
the Sep. 2006 assembly of the S. purpuratus genome (strPur2, Baylor release 3 Spur 2.1).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the S. purpuratus genome, see the project website:
http://www.hgsc.bcm.tmc.edu/projects/seaurchin/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=strPur2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/strPur2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
For conditions of use regarding the S. purpuratus genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-17 03:22 33
grp.txt.gz 2014-03-02 04:14 245
history.txt.gz 2007-10-10 14:52 558
hgFindSpec.txt.gz 2023-03-28 13:53 662
genscanPep.sql 2007-10-10 14:51 1.2K
chromInfo.sql 2007-10-10 14:50 1.2K
bigFiles.sql 2024-11-17 03:22 1.4K
grp.sql 2014-03-02 04:14 1.4K
history.sql 2007-10-10 14:52 1.4K
chainHg18Link.sql 2007-10-15 11:50 1.4K
tableDescriptions.sql 2024-11-16 02:03 1.4K
genscanSubopt.sql 2007-10-10 14:51 1.5K
microsat.sql 2015-08-24 01:57 1.5K
gap.sql 2007-10-10 14:50 1.5K
cytoBandIdeo.sql 2013-04-28 22:00 1.5K
chainCi2Link.sql 2010-03-14 14:19 1.5K
chainCi3Link.sql 2017-06-13 19:56 1.5K
tableList.sql 2024-11-17 03:22 1.6K
genscan.sql 2007-10-10 14:51 1.6K
gold.sql 2007-10-10 14:51 1.6K
gbLoaded.sql 2020-09-02 07:33 1.6K
chainHg18.sql 2007-10-15 11:47 1.7K
chainCi3.sql 2017-06-13 19:56 1.7K
gc5Base.sql 2007-10-10 14:51 1.7K
quality.sql 2007-10-10 14:52 1.7K
refFlat.sql 2020-09-02 07:33 1.7K
xenoRefFlat.sql 2020-09-02 07:33 1.7K
hgFindSpec.sql 2023-03-28 13:53 1.8K
chainCi2.sql 2010-03-14 14:19 1.8K
estOrientInfo.sql 2016-05-15 11:33 1.8K
mrnaOrientInfo.sql 2020-03-01 09:02 1.8K
rmsk.sql 2007-10-10 14:52 1.9K
refGene.sql 2020-09-02 07:33 1.9K
xenoRefGene.sql 2020-09-02 07:33 2.0K
simpleRepeat.sql 2007-10-10 14:53 2.0K
trackDb.sql 2023-03-28 13:53 2.1K
netCi3.sql 2017-06-13 19:56 2.1K
all_est.sql 2016-05-15 11:33 2.1K
all_mrna.sql 2019-07-14 09:26 2.1K
intronEst.sql 2016-05-15 11:33 2.1K
refSeqAli.sql 2020-03-01 09:02 2.1K
xenoMrna.sql 2020-09-02 07:33 2.1K
blastHg18KG.sql 2007-10-15 11:47 2.1K
xenoRefSeqAli.sql 2020-09-02 07:33 2.1K
netHg18.sql 2007-10-15 12:01 2.2K
netCi2.sql 2010-03-14 14:20 2.3K
tableList.txt.gz 2024-11-17 03:22 2.7K
tableDescriptions.txt.gz 2024-11-16 02:03 5.0K
trackDb.txt.gz 2023-03-28 13:53 27K
gbLoaded.txt.gz 2020-09-02 07:33 44K
refFlat.txt.gz 2020-09-02 07:33 47K
refGene.txt.gz 2020-09-02 07:33 52K
refSeqAli.txt.gz 2020-03-01 09:02 63K
microsat.txt.gz 2015-08-24 01:57 144K
mrnaOrientInfo.txt.gz 2020-03-01 09:02 463K
cytoBandIdeo.txt.gz 2013-04-28 22:00 503K
chromInfo.txt.gz 2007-10-10 14:50 584K
gap.txt.gz 2007-10-10 14:50 889K
blastHg18KG.txt.gz 2007-10-15 11:47 1.2M
netCi3.txt.gz 2017-06-13 19:56 1.3M
chainCi3.txt.gz 2017-06-13 19:56 1.5M
all_mrna.txt.gz 2019-07-14 09:26 2.3M
estOrientInfo.txt.gz 2016-05-15 11:33 2.3M
genscan.txt.gz 2007-10-10 14:51 2.6M
intronEst.txt.gz 2016-05-15 11:33 2.7M
gold.txt.gz 2007-10-10 14:51 2.8M
genscanSubopt.txt.gz 2007-10-10 14:51 3.1M
chainCi3Link.txt.gz 2017-06-13 19:56 3.8M
netCi2.txt.gz 2010-03-14 14:20 4.5M
gc5Base.txt.gz 2007-10-10 14:51 5.6M
xenoRefFlat.txt.gz 2020-09-02 07:33 9.5M
all_est.txt.gz 2016-05-15 11:33 9.8M
xenoRefSeqAli.txt.gz 2020-09-02 07:33 10M
simpleRepeat.txt.gz 2007-10-10 14:53 10M
xenoRefGene.txt.gz 2020-09-02 07:33 11M
chainCi2.txt.gz 2010-03-14 14:19 11M
netHg18.txt.gz 2007-10-15 12:01 12M
genscanPep.txt.gz 2007-10-10 14:51 12M
rmsk.txt.gz 2007-10-10 14:53 20M
quality.txt.gz 2007-10-10 14:52 20M
chainCi2Link.txt.gz 2010-03-14 14:19 54M
chainHg18.txt.gz 2007-10-15 11:49 69M
xenoMrna.txt.gz 2020-09-02 07:33 117M
chainHg18Link.txt.gz 2007-10-15 11:55 225M