This directory contains the Apr. 2011 (SacCer_Apr2011/sacCer3) assembly of
the S. cerevisiae genome (sacCer3, Saccharomyces cerevisiae S288c assembly
from Saccharomyces Genome Database (GCA_000146055.2))
in one gzip-compressed FASTA file per chromosome.
This assembly is based on sequence dated April 2011 in the Saccharomyces Genome
Database (http://www.yeastgenome.org/) and was obtained from the site
ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/fungi/Saccharomyces_cerevisiae/SacCer_Apr2011/
The S288C strain was used in this sequencing project.
Files included in this directory:
- chr*.fa.gz: compressed FASTA sequence of each chromosome.
No masking has been applied to this sequence.
- md5sum.txt: md5sum checksums for the files in this directory.
------------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/sacCer3/chromosomes. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Alternate methods to ftp access.
Using an rsync command to download the entire directory:
rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/sacCer3/chromosomes/ .
For a single file, e.g. chrM.fa.gz
rsync -avzP
rsync://hgdownload.cse.ucsc.edu/goldenPath/sacCer3/chromosomes/chrM.fa.gz .
Or with wget, all files:
wget --timestamping
'ftp://hgdownload.cse.ucsc.edu/goldenPath/sacCer3/chromosomes/*'
With wget, a single file:
wget --timestamping
'ftp://hgdownload.cse.ucsc.edu/goldenPath/sacCer3/chromosomes/chrM.fa.gz'
-O chrM.fa.gz
To uncompress the fa.gz files:
gunzip <file>.fa.gz
---------------------------------------------------------------------
All the tables in this directory are freely available for public use.
---------------------------------------------------------------------
Name Last modified Size Description
Parent Directory -
md5sum.txt 2011-09-02 14:20 787
chrM.fa.gz 2011-09-02 14:19 22K
chrI.fa.gz 2011-09-02 14:19 71K
chrVI.fa.gz 2011-09-02 14:19 83K
chrIII.fa.gz 2011-09-02 14:19 98K
chrIX.fa.gz 2011-09-02 14:19 135K
chrVIII.fa.gz 2011-09-02 14:19 173K
chrV.fa.gz 2011-09-02 14:19 178K
chrXI.fa.gz 2011-09-02 14:19 205K
chrX.fa.gz 2011-09-02 14:19 229K
chrXIV.fa.gz 2011-09-02 14:19 242K
chrII.fa.gz 2011-09-02 14:19 250K
chrXIII.fa.gz 2011-09-02 14:19 284K
chrXVI.fa.gz 2011-09-02 14:19 292K
chrXII.fa.gz 2011-09-02 14:19 328K
chrVII.fa.gz 2011-09-02 14:19 336K
chrXV.fa.gz 2011-09-02 14:19 336K
chrIV.fa.gz 2011-09-02 14:19 470K