This directory contains a dump of the UCSC genome annotation
database for the Saccharomyces cerevisiae sequence dated 1 Oct. 2003
in the Saccharomyces Genome Database (http://www.yeastgenome.org/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=sacCer1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/sacCer1/database. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
uwFootprintsTagCounts.txt.gz 2009-04-26 11:35 34M
choExpDistance.txt.gz 2004-01-14 17:03 34M
yeastP2P.txt.gz 2005-06-16 05:00 27M
protHomolog.txt.gz 2005-01-12 09:45 3.2M
ensPep.txt.gz 2008-04-19 03:11 1.7M
sgdPep.txt.gz 2004-01-14 17:04 1.6M
transRegCode.txt.gz 2004-12-22 21:39 1.4M
xenoRefSeqAli.txt.gz 2020-09-01 20:04 1.1M
xenoRefGene.txt.gz 2020-09-01 20:04 1.1M
sgdBlastTab.txt.gz 2004-01-14 17:04 1.0M
all_est.txt.gz 2016-05-15 11:28 961K
xenoRefFlat.txt.gz 2020-09-01 20:04 960K
multizYeast.txt.gz 2004-01-14 17:04 501K
phastConsElements.txt.gz 2004-09-30 17:31 380K
phastCons.txt.gz 2004-09-30 17:31 305K
estOrientInfo.txt.gz 2016-05-15 11:29 303K
blastHg16KG.txt.gz 2004-09-28 17:12 270K
ensGene.txt.gz 2008-04-19 03:11 150K
chr4_est.txt.gz 2016-05-15 11:28 149K
sgdDescription.txt.gz 2004-01-14 17:04 139K
transRegCodeProbe.txt.gz 2004-12-22 21:39 138K
oregannoAttr.txt.gz 2016-05-15 11:29 118K
sacKlu_pwMaf.txt.gz 2004-09-13 06:09 112K
sgdGene.txt.gz 2004-01-14 17:04 112K
augustusGene.txt.gz 2015-07-26 17:28 107K
chr15_est.txt.gz 2016-05-15 11:29 101K
uwFootprintsMappability.txt.gz 2009-04-26 11:34 99K
sgdCanonical.txt.gz 2004-01-14 17:04 89K
chr16_est.txt.gz 2016-05-15 11:28 84K
chr7_est.txt.gz 2016-05-15 11:29 83K
drBlastTab.txt.gz 2004-01-14 17:03 83K
oreganno.txt.gz 2016-05-15 11:29 83K
oregannoLink.txt.gz 2016-05-15 11:29 83K
chr12_est.txt.gz 2016-05-15 11:28 81K
sacCas_pwMaf.txt.gz 2004-09-13 06:09 77K
chr2_est.txt.gz 2016-05-15 11:29 71K
chr13_est.txt.gz 2016-05-15 11:28 70K
rnBlastTab.txt.gz 2006-07-22 13:14 68K
sacKud_pwMaf.txt.gz 2004-09-13 06:09 63K
hgBlastTab.txt.gz 2009-08-19 15:45 59K
mmBlastTab.txt.gz 2007-10-20 17:54 58K
sacMik_pwMaf.txt.gz 2004-09-13 06:09 56K
chr5_est.txt.gz 2016-05-15 11:28 53K
uwFootprintsPrints.txt.gz 2009-04-26 11:35 52K
dmBlastTab.txt.gz 2008-11-03 03:18 52K
chr10_est.txt.gz 2016-05-15 11:28 50K
chr11_est.txt.gz 2016-05-15 11:28 49K
chr14_est.txt.gz 2016-05-15 11:28 46K
sacBay_pwMaf.txt.gz 2004-09-13 06:09 46K
all_mrna.txt.gz 2020-05-09 02:10 44K
gbLoaded.txt.gz 2020-09-01 20:04 43K
esRegGeneToMotif.txt.gz 2004-09-28 17:12 37K
sgdToName.txt.gz 2007-03-23 10:42 36K
sacPar_pwMaf.txt.gz 2004-09-13 06:09 34K
simpleRepeat.txt.gz 2004-01-14 17:04 33K
chr8_est.txt.gz 2016-05-15 11:28 32K
chr3_est.txt.gz 2016-05-15 11:28 32K
sgdToSwissProt.txt.gz 2004-01-14 17:04 32K
chr6_est.txt.gz 2016-05-15 11:28 30K
ensGtp.txt.gz 2008-04-19 03:11 29K
sgdToSgd.txt.gz 2004-01-14 17:04 28K
sgdIsoforms.txt.gz 2004-01-14 17:04 27K
sgdOther.txt.gz 2004-01-14 17:04 24K
chr9_est.txt.gz 2016-05-15 11:28 24K
sgdToPfam.txt.gz 2004-04-17 05:21 22K
trackDb.txt.gz 2024-03-02 15:26 21K
sgdLocalization.txt.gz 2004-01-14 17:04 19K
sgdAbundance.txt.gz 2004-01-14 17:04 19K
esRegUpstreamRegion.txt.gz 2004-09-28 17:12 19K
mrnaOrientInfo.txt.gz 2020-05-09 02:10 18K
esRegMotif.txt.gz 2004-09-28 17:12 17K
sgdClone.txt.gz 2004-01-14 17:04 16K
samSubdir.txt.gz 2005-01-12 09:45 14K
sgdOtherDescription.txt.gz 2004-01-14 17:04 13K
chr4_intronEst.txt.gz 2016-05-15 11:28 12K
chr1_est.txt.gz 2016-05-15 11:28 11K
chr2_intronEst.txt.gz 2016-05-15 11:29 9.3K
esRegGeneToModule.txt.gz 2004-09-28 17:12 9.1K
chr7_intronEst.txt.gz 2016-05-15 11:29 8.3K
tableDescriptions.txt.gz 2025-03-29 02:03 6.9K
chr16_intronEst.txt.gz 2016-05-15 11:28 6.6K
transRegCodeMotif.txt.gz 2004-12-22 21:39 6.3K
tableList.txt.gz 2025-03-30 03:44 6.3K
chr12_intronEst.txt.gz 2016-05-15 11:28 5.7K
chr13_intronEst.txt.gz 2016-05-15 11:28 5.5K
chr4_mrna.txt.gz 2020-05-09 02:10 5.5K
chr15_intronEst.txt.gz 2016-05-15 11:29 5.3K
chr12_mrna.txt.gz 2020-05-09 02:09 4.6K
chr7_mrna.txt.gz 2020-05-09 02:10 4.4K
chr8_intronEst.txt.gz 2016-05-15 11:28 3.6K
chr10_mrna.txt.gz 2020-05-09 02:09 3.4K
chr13_mrna.txt.gz 2020-05-09 02:09 3.4K
chr5_intronEst.txt.gz 2016-05-15 11:28 3.3K
chr10_intronEst.txt.gz 2016-05-15 11:28 3.2K
chr15_mrna.txt.gz 2020-05-09 02:09 3.2K
chr2_mrna.txt.gz 2020-05-09 02:10 3.2K
chr11_intronEst.txt.gz 2016-05-15 11:28 3.2K
chr16_mrna.txt.gz 2020-05-09 02:10 3.1K
chr6_intronEst.txt.gz 2016-05-15 11:28 2.9K
chr14_mrna.txt.gz 2020-05-09 02:09 2.8K
gcPercent.txt.gz 2004-01-14 17:04 2.8K
chr5_mrna.txt.gz 2020-05-09 02:10 2.6K
chr9_intronEst.txt.gz 2016-05-15 11:28 2.6K
chr11_mrna.txt.gz 2020-05-09 02:09 2.5K
chr14_intronEst.txt.gz 2016-05-15 11:28 2.4K
xenoRefSeqAli.sql 2020-09-01 20:04 2.1K
all_mrna.sql 2020-05-09 02:10 2.1K
chr16_mrna.sql 2020-05-09 02:10 2.1K
chr15_mrna.sql 2020-05-09 02:09 2.1K
chr14_mrna.sql 2020-05-09 02:09 2.1K
chr13_mrna.sql 2020-05-09 02:09 2.1K
chr12_mrna.sql 2020-05-09 02:09 2.1K
chr11_mrna.sql 2020-05-09 02:09 2.1K
chr10_mrna.sql 2020-05-09 02:09 2.1K
chrM_mrna.sql 2020-05-09 02:10 2.1K
chr9_mrna.sql 2020-05-09 02:10 2.1K
chr8_mrna.sql 2020-05-09 02:10 2.1K
chr7_mrna.sql 2020-05-09 02:10 2.1K
chr6_mrna.sql 2020-05-09 02:10 2.1K
chr5_mrna.sql 2020-05-09 02:10 2.1K
chr4_mrna.sql 2020-05-09 02:10 2.1K
chr3_mrna.sql 2020-05-09 02:10 2.1K
chr2_mrna.sql 2020-05-09 02:10 2.1K
chr1_mrna.sql 2020-05-09 02:10 2.1K
chr16_intronEst.sql 2016-05-15 11:28 2.1K
chr15_intronEst.sql 2016-05-15 11:29 2.1K
chr14_intronEst.sql 2016-05-15 11:28 2.1K
chr13_intronEst.sql 2016-05-15 11:28 2.1K
chr12_intronEst.sql 2016-05-15 11:28 2.1K
chr11_intronEst.sql 2016-05-15 11:28 2.1K
chr10_intronEst.sql 2016-05-15 11:28 2.1K
chrM_intronEst.sql 2016-05-15 11:29 2.1K
chr9_intronEst.sql 2016-05-15 11:28 2.1K
chr8_intronEst.sql 2016-05-15 11:28 2.1K
chr7_intronEst.sql 2016-05-15 11:29 2.1K
chr6_intronEst.sql 2016-05-15 11:28 2.1K
chr5_intronEst.sql 2016-05-15 11:28 2.1K
chr4_intronEst.sql 2016-05-15 11:28 2.1K
chr3_intronEst.sql 2016-05-15 11:28 2.1K
chr2_intronEst.sql 2016-05-15 11:29 2.1K
chr1_intronEst.sql 2016-05-15 11:28 2.1K
all_est.sql 2016-05-15 11:28 2.1K
chr16_est.sql 2016-05-15 11:28 2.1K
chr15_est.sql 2016-05-15 11:28 2.1K
chr14_est.sql 2016-05-15 11:28 2.1K
chr13_est.sql 2016-05-15 11:28 2.1K
chr12_est.sql 2016-05-15 11:28 2.1K
chr11_est.sql 2016-05-15 11:28 2.1K
chr10_est.sql 2016-05-15 11:28 2.1K
chrM_est.sql 2016-05-15 11:28 2.1K
chr9_est.sql 2016-05-15 11:28 2.1K
chr8_est.sql 2016-05-15 11:28 2.1K
chr7_est.sql 2016-05-15 11:29 2.1K
chr6_est.sql 2016-05-15 11:28 2.1K
chr5_est.sql 2016-05-15 11:28 2.1K
chr4_est.sql 2016-05-15 11:28 2.1K
chr3_est.sql 2016-05-15 11:28 2.1K
chr2_est.sql 2016-05-15 11:29 2.1K
chr1_est.sql 2016-05-15 11:28 2.1K
trackDb.sql 2024-03-02 15:26 2.1K
xenoRefGene.sql 2020-09-01 20:04 2.0K
augustusGene.sql 2015-07-26 17:28 1.9K
ensGene.sql 2008-04-19 03:11 1.9K
mrnaOrientInfo.sql 2020-05-09 02:10 1.8K
hgFindSpec.sql 2024-03-02 15:26 1.8K
estOrientInfo.sql 2016-05-15 11:29 1.8K
chr8_mrna.txt.gz 2020-05-09 02:10 1.8K
uwFootprintsTagCounts.sql 2009-04-26 11:34 1.8K
hgBlastTab.sql 2009-08-19 15:45 1.8K
xenoRefFlat.sql 2020-09-01 20:04 1.7K
mmBlastTab.sql 2007-10-20 17:54 1.6K
dmBlastTab.sql 2008-11-03 03:18 1.6K
gbLoaded.sql 2020-09-01 20:04 1.6K
rnBlastTab.sql 2006-07-22 13:14 1.6K
tableList.sql 2025-03-30 03:44 1.6K
chr9_mrna.txt.gz 2020-05-09 02:10 1.5K
oreganno.sql 2016-05-15 11:29 1.5K
chr3_intronEst.txt.gz 2016-05-15 11:28 1.5K
extFile.txt.gz 2004-09-13 06:09 1.5K
tableDescriptions.sql 2025-03-29 02:03 1.5K
transRegCodeCondition.sql 2013-11-10 22:13 1.5K
oregannoLink.sql 2016-05-15 11:29 1.4K
bigFiles.sql 2025-03-30 03:44 1.4K
uwFootprintsPrints.sql 2009-04-26 11:35 1.4K
oregannoAttr.sql 2016-05-15 11:29 1.4K
grp.sql 2014-03-02 04:14 1.4K
blastHg16KG.sql 2013-10-01 12:48 1.3K
uwFootprintsMappability.sql 2009-04-26 11:34 1.3K
growthCondition.sql 2011-09-12 00:03 1.3K
ensGtp.sql 2008-04-19 03:11 1.3K
transRegCodeCondition.txt.gz 2013-11-10 22:13 1.2K
sgdToName.sql 2007-03-23 10:42 1.2K
ensPep.sql 2008-04-19 03:11 1.1K
chr3_mrna.txt.gz 2020-05-09 02:10 1.1K
chr1_intronEst.txt.gz 2016-05-15 11:28 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chr6_mrna.txt.gz 2020-05-09 02:10 1.1K
chr1_mrna.txt.gz 2020-05-09 02:10 1.0K
hgFindSpec.txt.gz 2024-03-02 15:26 903
phastCons.sql 2013-10-01 12:48 895
chrM_mrna.txt.gz 2020-05-09 02:10 860
sgdGene.sql 2013-10-01 12:48 833
sgdBlastTab.sql 2013-10-01 12:48 813
drBlastTab.sql 2013-10-01 12:48 811
growthCondition.txt.gz 2011-09-12 00:03 685
multizYeast.sql 2013-10-01 12:48 671
transRegCode.sql 2013-10-01 12:48 663
sacPar_pwMaf.sql 2013-10-01 12:48 662
sacMik_pwMaf.sql 2013-10-01 12:48 662
sacKud_pwMaf.sql 2013-10-01 12:48 662
sacKlu_pwMaf.sql 2013-10-01 12:48 662
sacCas_pwMaf.sql 2013-10-01 12:48 662
sacBay_pwMaf.sql 2013-10-01 12:48 662
esRegGeneToMotif.sql 2013-10-01 12:48 656
phastConsElements.sql 2013-10-01 12:48 655
transRegCodeProbe.sql 2013-10-01 12:48 638
protHomolog.sql 2013-10-01 12:48 621
sgdCanonical.sql 2013-10-01 12:48 616
esRegUpstreamRegion.sql 2013-10-01 12:48 598
sgdOther.sql 2013-10-01 12:48 594
history.txt.gz 2004-09-13 06:09 584
sgdClone.sql 2013-10-01 12:48 571
gcPercent.sql 2013-10-01 12:48 555
history.sql 2013-10-01 12:48 537
transRegCodeMotif.sql 2013-10-01 12:48 471
esRegMotif.sql 2013-10-01 12:48 452
extFile.sql 2013-10-01 12:48 445
sgdIsoforms.sql 2013-10-01 12:48 409
chromInfo.sql 2013-10-01 12:48 405
choExpDistance.sql 2013-10-01 12:48 403
sgdOtherDescription.sql 2013-10-01 12:48 401
sgdAbundance.sql 2013-10-01 12:48 394
sgdDescription.sql 2013-10-01 12:48 391
sgdLocalization.sql 2013-10-01 12:48 387
esRegGeneToModule.sql 2013-10-01 12:48 381
sgdToSwissProt.sql 2013-10-01 12:48 379
sgdToPfam.sql 2013-10-01 12:48 375
sgdToSgd.sql 2013-10-01 12:48 374
yeastP2P.sql 2013-10-01 12:48 359
samSubdir.sql 2013-10-01 12:48 345
sgdPep.sql 2013-10-01 12:48 331
grp.txt.gz 2014-03-02 04:14 218
chromInfo.txt.gz 2004-01-14 17:03 218
chrM_intronEst.txt.gz 2016-05-15 11:29 39
chrM_est.txt.gz 2016-05-15 11:28 33
bigFiles.txt.gz 2025-03-30 03:44 33