This directory contains the assembled sequence for the June 2003
update of the rat genome (rn3, Jun. 2003) in separate files for
each chromosome in a zipped Fasta format. This assembly was
provided by the Rat Genome Sequencing Consortium. It was produced
at the Baylor College of Medicine. For more information on the rat
genome, see the Rat Genome Project website for the Baylor College of
Medicine Human Genome Sequencing Center at http://www.hgsc.bcm.tmc.edu/.
Files included in this directory:
- chr*.fa.zip: compressed FASTA sequence of each chromosome.
Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/rnJun2003/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
These data are made available before scientific publication with the
following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of this data (the Rat
Genome Sequencing Consortium) are properly acknowledged.
3. The Centers producing the data reserve the right to publish the
initial large-scale analyses of the dataset, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. This is in accordance with, and with the understandings in the Fort
Lauderdale meeting discussing Community Resource Projects (see
http://www.wellcome.ac.uk/en/1/awtpubrepdat.html) and the resulting
NHGRI policy statement
(http://www.genome.gov/page.cfm?pageID=10506537).
5. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
conditions_for_use.txt 2003-07-03 08:36 1.0K
chr1.fa.zip 2003-07-03 11:18 76M
chr2.fa.zip 2003-07-03 11:21 74M
chr3.fa.zip 2003-07-03 11:23 50M
chr4.fa.zip 2003-07-03 11:26 54M
chr5.fa.zip 2003-07-03 11:28 50M
chr6.fa.zip 2003-07-03 11:29 42M
chr7.fa.zip 2003-07-03 11:31 41M
chr8.fa.zip 2003-07-03 11:32 37M
chr9.fa.zip 2003-07-03 11:34 33M
chrX.fa.zip 2003-07-03 11:35 45M
chr1_random.fa.zip 2003-07-03 11:36 1.0M
chr2_random.fa.zip 2003-07-03 11:36 1.2M
chr3_random.fa.zip 2003-07-03 11:36 477K
chr4_random.fa.zip 2003-07-03 11:36 564K
chr5_random.fa.zip 2003-07-03 11:36 570K
chr6_random.fa.zip 2003-07-03 11:36 495K
chr7_random.fa.zip 2003-07-03 11:36 325K
chr8_random.fa.zip 2003-07-03 11:36 243K
chr9_random.fa.zip 2003-07-03 11:36 316K
chrX_random.fa.zip 2003-07-03 11:36 489K
chr10.fa.zip 2003-07-03 11:37 32M
chr11.fa.zip 2003-07-03 11:38 26M
chr12.fa.zip 2003-07-03 11:39 13M
chr13.fa.zip 2003-07-03 11:40 32M
chr14.fa.zip 2003-07-03 11:41 32M
chr15.fa.zip 2003-07-03 11:42 31M
chr16.fa.zip 2003-07-03 11:43 26M
chr17.fa.zip 2003-07-03 11:45 28M
chr18.fa.zip 2003-07-03 11:46 25M
chr19.fa.zip 2003-07-03 11:46 17M
chr20.fa.zip 2003-07-03 11:47 16M
chr10_random.fa.zip 2003-07-03 11:48 235K
chrUn.fa.zip 2003-07-03 11:48 17M
chr11_random.fa.zip 2003-07-03 11:48 370K
chr12_random.fa.zip 2003-07-03 11:48 216K
chr13_random.fa.zip 2003-07-03 11:48 145K
chr14_random.fa.zip 2003-07-03 11:48 495K
chr15_random.fa.zip 2003-07-03 11:48 446K
chr16_random.fa.zip 2003-07-03 11:48 377K
chr17_random.fa.zip 2003-07-03 11:48 160K
chr18_random.fa.zip 2003-07-03 11:48 148K
chr19_random.fa.zip 2003-07-03 11:48 271K
chr20_random.fa.zip 2003-07-03 11:48 162K
chrUn_random.fa.zip 2003-07-03 11:48 1.8M