This directory contains the assembled sequence for the November 2004
update of the rat genome (rn4, Nov. 2004, version 3.4) in separate files
for each chromosome in a gzip-compressed Fasta format. This assembly was
provided by the Rat Genome Sequencing Consortium. It was produced
at the Baylor College of Medicine. For more information on the rat
genome, see the Rat Genome Project website for the Baylor College of
Medicine Human Genome Sequencing Center at http://www.hgsc.bcm.tmc.edu/.
Files included in this directory:
- chr*.fa.gz: compressed FASTA sequence of each chromosome.
Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/rn4/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
These data are made available before scientific publication with the
following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of this data (the Rat
Genome Sequencing Consortium) are properly acknowledged.
3. The Centers producing the data reserve the right to publish the
initial large-scale analyses of the dataset, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. This is in accordance with, and with the understandings in the Fort
Lauderdale meeting discussing Community Resource Projects (see
http://www.wellcome.ac.uk/en/1/awtpubrepdat.html) and the resulting
NHGRI policy statement
(http://www.genome.gov/page.cfm?pageID=10506537).
5. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2012-07-05 11:16 2.2K
chrX_random.fa.gz 2006-03-17 09:18 488K
chrX.fa.gz 2006-03-17 09:17 45M
chrUn_random.fa.gz 2006-03-17 09:17 1.8M
chrUn.fa.gz 2006-03-17 09:17 17M
chrM.fa.gz 2006-03-17 09:17 5.3K
chr9_random.fa.gz 2006-03-17 09:17 316K
chr9.fa.gz 2006-03-17 09:17 33M
chr8_random.fa.gz 2006-03-17 09:17 242K
chr8.fa.gz 2006-03-17 09:17 37M
chr7_random.fa.gz 2006-03-17 09:17 325K
chr7.fa.gz 2006-03-17 09:17 41M
chr6_random.fa.gz 2006-03-17 09:16 495K
chr6.fa.gz 2006-03-17 09:16 42M
chr5_random.fa.gz 2006-03-17 09:16 570K
chr5.fa.gz 2006-03-17 09:16 50M
chr4_random.fa.gz 2006-03-17 09:16 564K
chr4.fa.gz 2006-03-17 09:15 54M
chr3_random.fa.gz 2006-03-17 09:15 476K
chr3.fa.gz 2006-03-17 09:15 50M
chr20_random.fa.gz 2006-03-17 09:15 161K
chr20.fa.gz 2006-03-17 09:15 16M
chr2_random.fa.gz 2006-03-17 09:15 1.2M
chr2.fa.gz 2006-03-17 09:15 74M
chr19_random.fa.gz 2006-03-17 09:14 271K
chr19.fa.gz 2006-03-17 09:14 17M
chr18_random.fa.gz 2006-03-17 09:14 148K
chr18.fa.gz 2006-03-17 09:14 25M
chr17_random.fa.gz 2006-03-17 09:14 160K
chr17.fa.gz 2006-03-17 09:14 28M
chr16_random.fa.gz 2006-03-17 09:14 377K
chr16.fa.gz 2006-03-17 09:14 26M
chr15_random.fa.gz 2006-03-17 09:14 446K
chr15.fa.gz 2006-03-17 09:14 31M
chr14_random.fa.gz 2006-03-17 09:13 494K
chr14.fa.gz 2006-03-17 09:13 32M
chr13_random.fa.gz 2006-03-17 09:13 145K
chr13.fa.gz 2006-03-17 09:13 32M
chr12_random.fa.gz 2006-03-17 09:13 216K
chr12.fa.gz 2006-03-17 09:13 13M
chr11_random.fa.gz 2006-03-17 09:13 370K
chr11.fa.gz 2006-03-17 09:13 26M
chr10_random.fa.gz 2006-03-17 09:13 235K
chr10.fa.gz 2006-03-17 09:13 32M
chr1_random.fa.gz 2006-03-17 09:12 1.0M
chr1.fa.gz 2006-03-17 09:12 76M