This directory contains the Nov. 2002 freeze of the rat
genome from the Rat Genome Sequencing Consortium. The
assembly was produced at the Baylor College of Medicine
Human Genome Seuqencing Center. For more information on
the rat genome, see the Rat Genome Project website for
the Baylor College of Medicine Human Genome Sequencing Center
at http://www.hgsc.bcm.tmc.edu/.
This data has specific conditions concerning its use. Refer
to http://genome.ucsc.edu/goldenPath/credits.html for
details.
Due to its large size, we are no longer providing the
database.zip file for this assembly (Genome Browser database
as tab-delimited files and associated MySQL table creation
files). The files formerly contained in database.zip may still
be downloaded individually from this assembly's database
directory.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgarchive.cse.ucsc.edu, then go to the directory
goldenPath/rnNov2002/bigZips. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-------------------------------------------------------------
chromAgp.zip - Description of how the working draft was generated from
fragments at a chromosome layout level.
chromFa.zip - The working draft sequence chromosome in one file per
chromosome. Repeats from RepeatMasker and Tandem Repeats Finder
(with period of 12 or less) are in lower case; non-repeating
sequence is in upper case.
chromFaMasked.zip - The working draft sequence chromosomes, in one
file per chromosome. Repeats are masked by capital N's and
non-repeating sequence is shown in upper case.
chromOut.zip - RepeatMasker .out file for chromosomes. These were
created with RepeatMasker at the -s sensitive setting.
chromTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats
with period less than or equal to 12, translated into one .bed file
per chromosomes.
contigAgp.zip - Description of how the working draft was generated from
fragments at a contig layout level.
contigFa.zip - The working draft sequence contigs, in one file per
contig. Repeats from RepeatMasker and Tandem Repeats Finder
(with period of 12 or less) are in lower case while non-repeating
sequence is in upper case.
contigFaMasked.zip - The working draft sequence contigs, in one file
per contig. Repeats are masked by capital N's and non-repeating
sequence is shown in upper case.
contigOut.zip - RepeatMasker .out file for contigs. These were
created with RepeatMasker at the -s sensitive setting.
contigTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats
with period less than or equal to 12, translated into one .bed file
per contig.
Name Last modified Size Description
Parent Directory -
contigFa.zip 2002-11-27 14:32 804M
chromFa.zip 2002-11-27 13:23 804M
contigFaMasked.zip 2002-11-27 14:58 486M
chromFaMasked.zip 2002-11-27 13:49 486M
database.zip 2002-12-06 13:57 212M
chromOut.zip 2002-11-27 12:44 134M
contigOut.zip 2002-11-27 13:53 133M
contigTrf.zip 2002-11-27 15:38 15M
chromTrf.zip 2002-11-27 15:38 15M
mrna.zip 2003-01-14 09:39 4.6M
contigAgp.zip 2002-11-27 13:49 3.5M
chromAgp.zip 2002-11-27 12:41 3.4M