This directory contains a dump of the UCSC genome annotation database for the
    Oct. 2014 (Rrox_v1/rhiRox1) assembly of the golden snub-nosed monkey genome
    (rhiRox1, Novogene) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/7996
    http://www.ncbi.nlm.nih.gov/genome/assembly/218671
    http://www.ncbi.nlm.nih.gov/bioproject/266995

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=rhiRox1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/rhiRox1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/rhiRox1/database/ .
For a single file, e.g. gc5BaseBw.txt.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/rhiRox1/database/gc5BaseBw.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/rhiRox1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/rhiRox1/database/gc5BaseBw.txt.gz' 
        -O gc5BaseBw.txt.gz

Please note that some files contents, such as this example gc5BaseBw.txt.gz,
will point to the data being hosted in another /gbdb/ location, which
refers to ftp://hgdownload.cse.ucsc.edu/gbdb/

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql rhiRox1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql rhiRox1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-09-01 09:23 34M xenoRefSeqAli.sql 2020-09-01 09:23 2.1K xenoRefGene.txt.gz 2020-09-01 09:23 33M xenoRefGene.sql 2020-09-01 09:23 2.0K xenoRefFlat.txt.gz 2020-09-01 09:23 30M xenoRefFlat.sql 2020-09-01 09:23 1.7K windowmaskerSdust.txt.gz 2017-03-06 13:04 148M windowmaskerSdust.sql 2017-03-06 13:02 1.5K ucscToRefSeq.txt.gz 2018-02-04 09:11 762K ucscToRefSeq.sql 2018-02-04 09:11 1.4K ucscToINSDC.txt.gz 2018-02-04 09:10 760K ucscToINSDC.sql 2018-02-04 09:10 1.4K trackDb_pushedout.txt.gz 2023-12-05 13:51 28K trackDb_pushedout.sql 2023-12-05 13:51 2.1K trackDb.txt.gz 2023-12-05 13:51 27K trackDb.sql 2023-12-05 13:51 2.1K tissue.txt.gz 2017-03-06 13:02 204 tissue.sql 2017-03-06 13:02 1.4K tableList.txt.gz 2024-04-14 03:14 3.8K tableList.sql 2024-04-14 03:14 1.6K tableDescriptions.txt.gz 2024-04-13 02:03 7.7K tableDescriptions.sql 2024-04-13 02:03 1.4K source.txt.gz 2017-03-06 13:02 301K source.sql 2017-03-06 13:02 1.4K simpleRepeat.txt.gz 2017-03-06 13:01 30M simpleRepeat.sql 2017-03-06 13:01 1.9K sex.txt.gz 2017-03-06 13:01 39 sex.sql 2017-03-06 13:01 1.4K seqNcbiRefSeq.txt.gz 2018-08-14 02:25 631K seqNcbiRefSeq.sql 2018-08-14 02:25 1.6K rmsk.txt.gz 2017-03-06 12:56 144M rmsk.sql 2017-03-06 12:54 1.9K refSeqSummary.txt.gz 2017-03-06 12:54 4.9M refSeqSummary.sql 2017-03-06 12:54 1.5K refSeqStatus.txt.gz 2017-03-06 12:54 1.5M refSeqStatus.sql 2017-03-06 12:54 1.6K refLink.txt.gz 2017-03-06 12:46 11M refLink.sql 2017-03-06 12:46 1.7K productName.txt.gz 2017-03-06 12:54 3.0M productName.sql 2017-03-06 12:54 1.4K organism.txt.gz 2017-03-06 12:53 295K organism.sql 2017-03-06 12:53 1.4K netTarSyr2.txt.gz 2017-03-06 12:51 70M netTarSyr2.sql 2017-03-06 12:49 2.1K netHg38.txt.gz 2017-03-06 12:48 26M netHg38.sql 2017-03-06 12:47 2.1K nestedRepeats.txt.gz 2017-03-06 12:46 18M nestedRepeats.sql 2017-03-06 12:46 1.9K ncbiRefSeqPsl.txt.gz 2018-02-09 13:47 3.1M ncbiRefSeqPsl.sql 2018-02-09 13:47 2.1K ncbiRefSeqPredicted.txt.gz 2018-02-09 13:47 2.6M ncbiRefSeqPredicted.sql 2018-02-09 13:47 2.0K ncbiRefSeqPepTable.txt.gz 2018-08-14 02:25 7.2M ncbiRefSeqPepTable.sql 2018-08-14 02:25 1.4K ncbiRefSeqOther.txt.gz 2018-08-14 02:25 75 ncbiRefSeqOther.sql 2018-08-14 02:25 1.3K ncbiRefSeqLink.txt.gz 2018-02-09 13:47 1.1M ncbiRefSeqLink.sql 2018-02-09 13:47 2.0K ncbiRefSeqCds.txt.gz 2018-08-14 02:25 243K ncbiRefSeqCds.sql 2018-08-14 02:25 1.4K ncbiRefSeq.txt.gz 2018-02-09 13:46 2.6M ncbiRefSeq.sql 2018-02-09 13:46 2.0K mrnaClone.txt.gz 2017-03-06 12:45 1.4K mrnaClone.sql 2017-03-06 12:45 1.4K microsat.txt.gz 2017-03-06 10:47 366K microsat.sql 2017-03-06 10:47 1.5K library.txt.gz 2017-03-06 10:47 43 library.sql 2017-03-06 10:47 1.4K keyword.txt.gz 2017-03-06 10:47 709 keyword.sql 2017-03-06 10:47 1.4K imageClone.txt.gz 2017-03-06 10:47 35 imageClone.sql 2017-03-06 10:47 1.5K history.txt.gz 2017-03-06 12:48 615 history.sql 2017-03-06 12:48 1.6K hgFindSpec_pushedout.txt.gz 2023-12-05 13:51 1.0K hgFindSpec_pushedout.sql 2023-12-05 13:51 1.8K hgFindSpec.txt.gz 2023-12-05 13:51 1.0K hgFindSpec.sql 2023-12-05 13:51 1.8K grp.txt.gz 2017-03-06 12:47 213 grp.sql 2017-03-06 12:47 1.3K gold.txt.gz 2017-03-06 12:46 2.3M gold.sql 2017-03-06 12:46 1.7K genscanSubopt.txt.gz 2017-03-06 12:45 5.8M genscanSubopt.sql 2017-03-06 12:45 1.6K genscan.txt.gz 2017-03-06 12:45 2.8M genscan.sql 2017-03-06 12:45 1.7K geneName.txt.gz 2017-03-06 11:51 2.3M geneName.sql 2017-03-06 11:51 1.4K gc5BaseBw.txt.gz 2017-03-06 11:40 66 gc5BaseBw.sql 2017-03-06 11:40 1.3K gbWarn.txt.gz 2017-03-06 11:00 31 gbWarn.sql 2017-03-06 11:00 1.3K gbStatus.txt.gz 2017-03-06 12:54 3.6M gbStatus.sql 2017-03-06 12:53 1.9K gbSeq.txt.gz 2017-03-06 12:53 12M gbSeq.sql 2017-03-06 12:53 1.7K gbMiscDiff.txt.gz 2017-03-06 12:49 4.1K gbMiscDiff.sql 2017-03-06 12:49 1.5K gbLoaded.txt.gz 2020-09-01 09:23 6.6K gbLoaded.sql 2020-09-01 09:23 1.6K gbExtFile.txt.gz 2017-03-06 12:46 5.1K gbExtFile.sql 2017-03-06 12:46 1.4K gbCdnaInfo.txt.gz 2017-03-06 12:49 9.6M gbCdnaInfo.sql 2017-03-06 12:48 2.6K gap.txt.gz 2017-03-06 12:47 878K gap.sql 2017-03-06 12:47 1.6K extNcbiRefSeq.txt.gz 2018-08-14 02:25 91 extNcbiRefSeq.sql 2018-08-14 02:25 1.5K ensemblToGeneName.txt.gz 2021-05-25 14:47 218K ensemblToGeneName.sql 2021-05-25 14:47 1.4K ensemblSource.txt.gz 2021-05-25 14:49 148K ensemblSource.sql 2021-05-25 14:49 1.4K ensPep.txt.gz 2021-05-25 14:49 7.0M ensPep.sql 2021-05-25 14:49 1.3K ensGtp.txt.gz 2021-05-25 14:47 473K ensGtp.sql 2021-05-25 14:47 1.4K ensGene.txt.gz 2021-05-25 14:47 3.0M ensGene.sql 2021-05-25 14:47 1.9K development.txt.gz 2017-03-06 12:47 63 development.sql 2017-03-06 12:47 1.4K description.txt.gz 2017-03-06 12:47 9.6M description.sql 2017-03-06 12:47 1.4K cytoBandIdeo.txt.gz 2017-03-06 12:46 437K cytoBandIdeo.sql 2017-03-06 12:46 1.5K cpgIslandExtUnmasked.txt.gz 2017-03-06 12:46 1.5M cpgIslandExtUnmasked.sql 2017-03-06 12:46 1.7K cpgIslandExt.txt.gz 2017-03-06 12:46 584K cpgIslandExt.sql 2017-03-06 12:46 1.7K chromInfo.txt.gz 2017-03-06 12:45 486K chromInfo.sql 2017-03-06 12:45 1.4K chromAlias.txt.gz 2018-02-04 09:10 1.3M chromAlias.sql 2018-02-04 09:10 1.4K chainTarSyr2Link.txt.gz 2017-03-06 12:05 1.2G chainTarSyr2Link.sql 2017-03-06 11:51 1.5K chainTarSyr2.txt.gz 2017-03-06 11:42 309M chainTarSyr2.sql 2017-03-06 11:40 1.7K chainHg38Link.txt.gz 2017-03-06 11:12 900M chainHg38Link.sql 2017-03-06 11:00 1.5K chainHg38.txt.gz 2017-03-06 10:50 296M chainHg38.sql 2017-03-06 10:47 1.7K cell.txt.gz 2017-03-06 10:47 40 cell.sql 2017-03-06 10:47 1.4K cds.txt.gz 2017-03-06 10:47 2.0M cds.sql 2017-03-06 10:47 1.4K bigFiles.txt.gz 2024-04-14 03:14 95 bigFiles.sql 2024-04-14 03:14 1.4K author.txt.gz 2017-03-06 10:47 3.5M author.sql 2017-03-06 10:47 1.4K augustusGene.txt.gz 2017-03-06 10:47 2.2M augustusGene.sql 2017-03-06 10:47 1.9K