This directory contains a dump of the UCSC genome annotation database
for the Jan. 2005 rhesus genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (rheMac1, BCM HGSC Mmul_0.1). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables. See
http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for
descriptions of the tables.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/rheMac1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the rhesus assembly data at
http://genome.ucsc.edu/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory -
chainHg17Link.txt.gz 2005-05-18 06:44 795M
chainMm7Link.txt.gz 2005-12-22 06:06 385M
chainHg17.txt.gz 2005-05-18 06:34 168M
rmsk.txt.gz 2005-05-18 07:00 119M
netMm7.txt.gz 2005-12-22 06:11 68M
xenoMrna.txt.gz 2006-08-13 18:19 68M
quality.txt.gz 2005-06-16 04:59 62M
chainMm7.txt.gz 2005-12-22 06:01 38M
netHg17.txt.gz 2005-05-18 06:57 36M
gbSeq.txt.gz 2006-08-13 18:17 21M
gbCdnaInfo.txt.gz 2006-08-13 18:20 21M
gbCdnaInfoNoGi.txt.gz 2006-07-21 10:41 16M
simpleRepeat.txt.gz 2005-05-18 07:01 15M
gc5Base.txt.gz 2005-05-18 06:56 14M
gbStatus.txt.gz 2006-08-13 18:17 11M
gold.txt.gz 2005-05-18 06:56 6.4M
mrnaClone.txt.gz 2006-08-13 18:18 6.1M
author.txt.gz 2006-08-13 18:17 5.6M
description.txt.gz 2006-08-13 18:17 5.3M
productName.txt.gz 2006-08-13 18:16 5.1M
xenoRefSeqAli.txt.gz 2006-08-13 18:17 4.8M
scaffoldCoords.txt.gz 2005-05-18 07:01 4.4M
refLink.txt.gz 2006-08-13 18:18 4.2M
refSeqSummary.txt.gz 2006-08-13 18:18 4.0M
all_est.txt.gz 2005-11-30 11:19 3.2M
xenoRefFlat.txt.gz 2006-08-13 18:20 3.0M
gap.txt.gz 2005-05-18 06:54 2.9M
xenoRefGene.txt.gz 2006-08-13 18:18 2.7M
geneName.txt.gz 2006-08-13 18:17 2.5M
cds.txt.gz 2006-08-13 18:16 2.3M
intronEst.txt.gz 2005-11-30 11:18 1.6M
imageClone.txt.gz 2006-08-13 18:17 931K
chromInfo.txt.gz 2005-05-18 06:54 878K
estOrientInfo.txt.gz 2005-11-30 11:18 814K
keyword.txt.gz 2006-08-13 18:17 767K
refSeqStatus.txt.gz 2006-08-13 18:19 530K
source.txt.gz 2006-08-13 18:18 205K
gbDelete_tmp.txt.gz 2005-09-16 05:05 180K
organism.txt.gz 2006-08-13 18:17 175K
library.txt.gz 2006-08-13 18:17 170K
all_mrna.txt.gz 2006-08-13 18:18 105K
tissue.txt.gz 2006-08-13 18:17 94K
cell.txt.gz 2006-08-06 18:15 91K
development.txt.gz 2006-08-13 18:18 70K
trackDb_fanhsu.txt.gz 2005-05-18 07:02 55K
mrnaOrientInfo.txt.gz 2006-08-13 18:19 31K
gbLoaded.txt.gz 2006-08-13 18:17 20K
trackDb.txt.gz 2006-07-29 07:36 9.1K
gbExtFile.txt.gz 2006-08-13 18:18 6.3K
tableDescriptions.txt.gz 2006-02-12 08:36 5.0K
gbCdnaInfo.sql 2006-08-13 18:19 2.4K
gbCdnaInfoNoGi.sql 2006-07-21 10:40 2.4K
hgFindSpec_fanhsu.txt.gz 2005-05-18 06:56 2.3K
xenoRefSeqAli.sql 2006-08-13 18:17 2.2K
xenoMrna.sql 2006-08-13 18:18 2.2K
all_mrna.sql 2006-08-13 18:18 2.2K
trackDb.sql 2006-07-29 07:36 2.0K
gbStatus.sql 2006-08-13 18:17 1.9K
mrnaOrientInfo.sql 2006-08-13 18:19 1.7K
xenoRefFlat.sql 2006-08-13 18:20 1.6K
refLink.sql 2006-08-13 18:18 1.6K
gbSeq.sql 2006-08-13 18:17 1.6K
xenoRefGene.sql 2006-08-13 18:18 1.6K
gbLoaded.sql 2006-08-13 18:17 1.4K
intronEst.sql 2013-10-01 12:48 1.3K
all_est.sql 2013-10-01 12:48 1.3K
netHg17.sql 2013-10-01 12:48 1.3K
netMm7.sql 2013-10-01 12:48 1.3K
imageClone.sql 2006-08-13 18:17 1.3K
refSeqSummary.sql 2006-08-13 18:18 1.3K
sex.txt.gz 2006-07-30 16:05 1.2K
refSeqStatus.sql 2006-08-13 18:19 1.2K
productName.sql 2006-08-13 18:16 1.2K
development.sql 2006-08-13 18:18 1.2K
description.sql 2006-08-13 18:17 1.2K
gbExtFile.sql 2006-08-13 18:18 1.2K
trackDb_fanhsu.sql 2013-10-01 12:48 1.2K
mrnaClone.sql 2006-08-13 18:18 1.2K
organism.sql 2006-08-13 18:17 1.2K
geneName.sql 2006-08-13 18:17 1.2K
library.sql 2006-08-13 18:17 1.2K
keyword.sql 2006-08-13 18:17 1.2K
tissue.sql 2006-08-13 18:17 1.2K
source.sql 2006-08-13 18:18 1.2K
author.sql 2006-08-13 18:17 1.2K
cell.sql 2006-08-06 18:15 1.2K
sex.sql 2006-07-30 16:05 1.2K
cds.sql 2006-08-13 18:16 1.2K
simpleRepeat.sql 2013-10-01 12:48 1.1K
rmsk.sql 2013-10-01 12:48 1.1K
quality.sql 2013-10-01 12:48 892
gc5Base.sql 2013-10-01 12:48 892
chainHg17.sql 2013-10-01 12:48 880
chainMm7.sql 2013-10-01 12:48 878
estOrientInfo.sql 2013-10-01 12:48 855
hgFindSpec_fanhsu.sql 2013-10-01 12:48 843
hgFindSpec.sql 2013-10-01 12:48 829
gold.sql 2013-10-01 12:48 799
gap.sql 2013-10-01 12:48 722
ctgPos2.sql 2013-10-01 12:48 615
chainHg17Link.sql 2013-10-01 12:48 579
chainMm7Link.sql 2013-10-01 12:48 577
history.sql 2013-10-01 12:48 537
tableDescriptions.sql 2013-10-01 12:48 403
chromInfo.sql 2013-10-01 12:48 389
scaffoldCoords.sql 2013-10-01 12:48 378
grp.sql 2013-10-01 12:48 362
gbDelete_tmp.sql 2013-10-01 12:48 326
hgFindSpec.txt.gz 2005-05-18 06:56 275
grp.txt.gz 2005-05-18 06:56 204
history.txt.gz 2005-05-18 06:56 132
ctgPos2.txt.gz 2005-05-18 06:54 32