This directory contains a dump of the UCSC genome annotation database
for the Jan. 2005 rhesus genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (rheMac1, BCM HGSC Mmul_0.1). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables. See
http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for
descriptions of the tables.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/rheMac1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the rhesus assembly data at
http://genome.ucsc.edu/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory -
ctgPos2.txt.gz 2005-05-18 06:54 32
history.txt.gz 2005-05-18 06:56 132
grp.txt.gz 2005-05-18 06:56 204
hgFindSpec.txt.gz 2005-05-18 06:56 275
gbDelete_tmp.sql 2013-10-01 12:48 326
grp.sql 2013-10-01 12:48 362
scaffoldCoords.sql 2013-10-01 12:48 378
chromInfo.sql 2013-10-01 12:48 389
tableDescriptions.sql 2013-10-01 12:48 403
history.sql 2013-10-01 12:48 537
chainMm7Link.sql 2013-10-01 12:48 577
chainHg17Link.sql 2013-10-01 12:48 579
ctgPos2.sql 2013-10-01 12:48 615
gap.sql 2013-10-01 12:48 722
gold.sql 2013-10-01 12:48 799
hgFindSpec.sql 2013-10-01 12:48 829
hgFindSpec_fanhsu.sql 2013-10-01 12:48 843
estOrientInfo.sql 2013-10-01 12:48 855
chainMm7.sql 2013-10-01 12:48 878
chainHg17.sql 2013-10-01 12:48 880
gc5Base.sql 2013-10-01 12:48 892
quality.sql 2013-10-01 12:48 892
rmsk.sql 2013-10-01 12:48 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
cds.sql 2006-08-13 18:16 1.2K
sex.sql 2006-07-30 16:05 1.2K
cell.sql 2006-08-06 18:15 1.2K
author.sql 2006-08-13 18:17 1.2K
source.sql 2006-08-13 18:18 1.2K
tissue.sql 2006-08-13 18:17 1.2K
keyword.sql 2006-08-13 18:17 1.2K
library.sql 2006-08-13 18:17 1.2K
geneName.sql 2006-08-13 18:17 1.2K
organism.sql 2006-08-13 18:17 1.2K
mrnaClone.sql 2006-08-13 18:18 1.2K
trackDb_fanhsu.sql 2013-10-01 12:48 1.2K
gbExtFile.sql 2006-08-13 18:18 1.2K
description.sql 2006-08-13 18:17 1.2K
development.sql 2006-08-13 18:18 1.2K
productName.sql 2006-08-13 18:16 1.2K
refSeqStatus.sql 2006-08-13 18:19 1.2K
sex.txt.gz 2006-07-30 16:05 1.2K
refSeqSummary.sql 2006-08-13 18:18 1.3K
imageClone.sql 2006-08-13 18:17 1.3K
netMm7.sql 2013-10-01 12:48 1.3K
netHg17.sql 2013-10-01 12:48 1.3K
all_est.sql 2013-10-01 12:48 1.3K
intronEst.sql 2013-10-01 12:48 1.3K
gbLoaded.sql 2006-08-13 18:17 1.4K
xenoRefGene.sql 2006-08-13 18:18 1.6K
gbSeq.sql 2006-08-13 18:17 1.6K
refLink.sql 2006-08-13 18:18 1.6K
xenoRefFlat.sql 2006-08-13 18:20 1.6K
mrnaOrientInfo.sql 2006-08-13 18:19 1.7K
gbStatus.sql 2006-08-13 18:17 1.9K
trackDb.sql 2006-07-29 07:36 2.0K
all_mrna.sql 2006-08-13 18:18 2.2K
xenoMrna.sql 2006-08-13 18:18 2.2K
xenoRefSeqAli.sql 2006-08-13 18:17 2.2K
hgFindSpec_fanhsu.txt.gz 2005-05-18 06:56 2.3K
gbCdnaInfoNoGi.sql 2006-07-21 10:40 2.4K
gbCdnaInfo.sql 2006-08-13 18:19 2.4K
tableDescriptions.txt.gz 2006-02-12 08:36 5.0K
gbExtFile.txt.gz 2006-08-13 18:18 6.3K
trackDb.txt.gz 2006-07-29 07:36 9.1K
gbLoaded.txt.gz 2006-08-13 18:17 20K
mrnaOrientInfo.txt.gz 2006-08-13 18:19 31K
trackDb_fanhsu.txt.gz 2005-05-18 07:02 55K
development.txt.gz 2006-08-13 18:18 70K
cell.txt.gz 2006-08-06 18:15 91K
tissue.txt.gz 2006-08-13 18:17 94K
all_mrna.txt.gz 2006-08-13 18:18 105K
library.txt.gz 2006-08-13 18:17 170K
organism.txt.gz 2006-08-13 18:17 175K
gbDelete_tmp.txt.gz 2005-09-16 05:05 180K
source.txt.gz 2006-08-13 18:18 205K
refSeqStatus.txt.gz 2006-08-13 18:19 530K
keyword.txt.gz 2006-08-13 18:17 767K
estOrientInfo.txt.gz 2005-11-30 11:18 814K
chromInfo.txt.gz 2005-05-18 06:54 878K
imageClone.txt.gz 2006-08-13 18:17 931K
intronEst.txt.gz 2005-11-30 11:18 1.6M
cds.txt.gz 2006-08-13 18:16 2.3M
geneName.txt.gz 2006-08-13 18:17 2.5M
xenoRefGene.txt.gz 2006-08-13 18:18 2.7M
gap.txt.gz 2005-05-18 06:54 2.9M
xenoRefFlat.txt.gz 2006-08-13 18:20 3.0M
all_est.txt.gz 2005-11-30 11:19 3.2M
refSeqSummary.txt.gz 2006-08-13 18:18 4.0M
refLink.txt.gz 2006-08-13 18:18 4.2M
scaffoldCoords.txt.gz 2005-05-18 07:01 4.4M
xenoRefSeqAli.txt.gz 2006-08-13 18:17 4.8M
productName.txt.gz 2006-08-13 18:16 5.1M
description.txt.gz 2006-08-13 18:17 5.3M
author.txt.gz 2006-08-13 18:17 5.6M
mrnaClone.txt.gz 2006-08-13 18:18 6.1M
gold.txt.gz 2005-05-18 06:56 6.4M
gbStatus.txt.gz 2006-08-13 18:17 11M
gc5Base.txt.gz 2005-05-18 06:56 14M
simpleRepeat.txt.gz 2005-05-18 07:01 15M
gbCdnaInfoNoGi.txt.gz 2006-07-21 10:41 16M
gbCdnaInfo.txt.gz 2006-08-13 18:20 21M
gbSeq.txt.gz 2006-08-13 18:17 21M
netHg17.txt.gz 2005-05-18 06:57 36M
chainMm7.txt.gz 2005-12-22 06:01 38M
quality.txt.gz 2005-06-16 04:59 62M
xenoMrna.txt.gz 2006-08-13 18:19 68M
netMm7.txt.gz 2005-12-22 06:11 68M
rmsk.txt.gz 2005-05-18 07:00 119M
chainHg17.txt.gz 2005-05-18 06:34 168M
chainMm7Link.txt.gz 2005-12-22 06:06 385M
chainHg17Link.txt.gz 2005-05-18 06:44 795M