This directory contains a dump of the UCSC genome annotation database
for the Jan. 2005 rhesus genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (rheMac1, BCM HGSC Mmul_0.1). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables. See
http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for
descriptions of the tables.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/rheMac1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the rhesus assembly data at
http://genome.ucsc.edu/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2006-08-13 18:17 4.8M
xenoRefSeqAli.sql 2006-08-13 18:17 2.2K
xenoRefGene.txt.gz 2006-08-13 18:18 2.7M
xenoRefGene.sql 2006-08-13 18:18 1.6K
xenoRefFlat.txt.gz 2006-08-13 18:20 3.0M
xenoRefFlat.sql 2006-08-13 18:20 1.6K
xenoMrna.txt.gz 2006-08-13 18:19 68M
xenoMrna.sql 2006-08-13 18:18 2.2K
trackDb_fanhsu.txt.gz 2005-05-18 07:02 55K
trackDb_fanhsu.sql 2013-10-01 12:48 1.2K
trackDb.txt.gz 2006-07-29 07:36 9.1K
trackDb.sql 2006-07-29 07:36 2.0K
tissue.txt.gz 2006-08-13 18:17 94K
tissue.sql 2006-08-13 18:17 1.2K
tableDescriptions.txt.gz 2006-02-12 08:36 5.0K
tableDescriptions.sql 2013-10-01 12:48 403
source.txt.gz 2006-08-13 18:18 205K
source.sql 2006-08-13 18:18 1.2K
simpleRepeat.txt.gz 2005-05-18 07:01 15M
simpleRepeat.sql 2013-10-01 12:48 1.1K
sex.txt.gz 2006-07-30 16:05 1.2K
sex.sql 2006-07-30 16:05 1.2K
scaffoldCoords.txt.gz 2005-05-18 07:01 4.4M
scaffoldCoords.sql 2013-10-01 12:48 378
rmsk.txt.gz 2005-05-18 07:00 119M
rmsk.sql 2013-10-01 12:48 1.1K
refSeqSummary.txt.gz 2006-08-13 18:18 4.0M
refSeqSummary.sql 2006-08-13 18:18 1.3K
refSeqStatus.txt.gz 2006-08-13 18:19 530K
refSeqStatus.sql 2006-08-13 18:19 1.2K
refLink.txt.gz 2006-08-13 18:18 4.2M
refLink.sql 2006-08-13 18:18 1.6K
quality.txt.gz 2005-06-16 04:59 62M
quality.sql 2013-10-01 12:48 892
productName.txt.gz 2006-08-13 18:16 5.1M
productName.sql 2006-08-13 18:16 1.2K
organism.txt.gz 2006-08-13 18:17 175K
organism.sql 2006-08-13 18:17 1.2K
netMm7.txt.gz 2005-12-22 06:11 68M
netMm7.sql 2013-10-01 12:48 1.3K
netHg17.txt.gz 2005-05-18 06:57 36M
netHg17.sql 2013-10-01 12:48 1.3K
mrnaOrientInfo.txt.gz 2006-08-13 18:19 31K
mrnaOrientInfo.sql 2006-08-13 18:19 1.7K
mrnaClone.txt.gz 2006-08-13 18:18 6.1M
mrnaClone.sql 2006-08-13 18:18 1.2K
library.txt.gz 2006-08-13 18:17 170K
library.sql 2006-08-13 18:17 1.2K
keyword.txt.gz 2006-08-13 18:17 767K
keyword.sql 2006-08-13 18:17 1.2K
intronEst.txt.gz 2005-11-30 11:18 1.6M
intronEst.sql 2013-10-01 12:48 1.3K
imageClone.txt.gz 2006-08-13 18:17 931K
imageClone.sql 2006-08-13 18:17 1.3K
history.txt.gz 2005-05-18 06:56 132
history.sql 2013-10-01 12:48 537
hgFindSpec_fanhsu.txt.gz 2005-05-18 06:56 2.3K
hgFindSpec_fanhsu.sql 2013-10-01 12:48 843
hgFindSpec.txt.gz 2005-05-18 06:56 275
hgFindSpec.sql 2013-10-01 12:48 829
grp.txt.gz 2005-05-18 06:56 204
grp.sql 2013-10-01 12:48 362
gold.txt.gz 2005-05-18 06:56 6.4M
gold.sql 2013-10-01 12:48 799
geneName.txt.gz 2006-08-13 18:17 2.5M
geneName.sql 2006-08-13 18:17 1.2K
gc5Base.txt.gz 2005-05-18 06:56 14M
gc5Base.sql 2013-10-01 12:48 892
gbStatus.txt.gz 2006-08-13 18:17 11M
gbStatus.sql 2006-08-13 18:17 1.9K
gbSeq.txt.gz 2006-08-13 18:17 21M
gbSeq.sql 2006-08-13 18:17 1.6K
gbLoaded.txt.gz 2006-08-13 18:17 20K
gbLoaded.sql 2006-08-13 18:17 1.4K
gbExtFile.txt.gz 2006-08-13 18:18 6.3K
gbExtFile.sql 2006-08-13 18:18 1.2K
gbDelete_tmp.txt.gz 2005-09-16 05:05 180K
gbDelete_tmp.sql 2013-10-01 12:48 326
gbCdnaInfoNoGi.txt.gz 2006-07-21 10:41 16M
gbCdnaInfoNoGi.sql 2006-07-21 10:40 2.4K
gbCdnaInfo.txt.gz 2006-08-13 18:20 21M
gbCdnaInfo.sql 2006-08-13 18:19 2.4K
gap.txt.gz 2005-05-18 06:54 2.9M
gap.sql 2013-10-01 12:48 722
estOrientInfo.txt.gz 2005-11-30 11:18 814K
estOrientInfo.sql 2013-10-01 12:48 855
development.txt.gz 2006-08-13 18:18 70K
development.sql 2006-08-13 18:18 1.2K
description.txt.gz 2006-08-13 18:17 5.3M
description.sql 2006-08-13 18:17 1.2K
ctgPos2.txt.gz 2005-05-18 06:54 32
ctgPos2.sql 2013-10-01 12:48 615
chromInfo.txt.gz 2005-05-18 06:54 878K
chromInfo.sql 2013-10-01 12:48 389
chainMm7Link.txt.gz 2005-12-22 06:06 385M
chainMm7Link.sql 2013-10-01 12:48 577
chainMm7.txt.gz 2005-12-22 06:01 38M
chainMm7.sql 2013-10-01 12:48 878
chainHg17Link.txt.gz 2005-05-18 06:44 795M
chainHg17Link.sql 2013-10-01 12:48 579
chainHg17.txt.gz 2005-05-18 06:34 168M
chainHg17.sql 2013-10-01 12:48 880
cell.txt.gz 2006-08-06 18:15 91K
cell.sql 2006-08-06 18:15 1.2K
cds.txt.gz 2006-08-13 18:16 2.3M
cds.sql 2006-08-13 18:16 1.2K
author.txt.gz 2006-08-13 18:17 5.6M
author.sql 2006-08-13 18:17 1.2K
all_mrna.txt.gz 2006-08-13 18:18 105K
all_mrna.sql 2006-08-13 18:18 2.2K
all_est.txt.gz 2005-11-30 11:19 3.2M
all_est.sql 2013-10-01 12:48 1.3K