This directory contains reciprocal-best netted chains for ponAbe3-mm10.
- ponAbe3.mm10.rbest.net.gz: ponAbe3-referenced recip.best net to mm10.
- ponAbe3.mm10.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from ponAbe3 to mm10 through the recip.best net.
- mm10.ponAbe3.rbest.net.gz: mm10-referenced recip.best net.
- mm10.ponAbe3.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/ponAbe3.mm10.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
ponAbe3.mm10.rbest.net.gz 2018-03-26 22:04 140M
ponAbe3.mm10.rbest.chain.gz 2018-03-26 22:02 65M
mm10.ponAbe3.rbest.net.gz 2018-03-26 21:59 91M
mm10.ponAbe3.rbest.chain.gz 2018-03-26 22:00 65M
md5sum.txt 2018-03-26 22:04 244
axtRBestNet/ 2018-11-01 11:44 -