This directory contains reciprocal-best netted chains for papAnu4-mm10. - papAnu4.mm10.rbest.net.gz: papAnu4-referenced recip.best net to mm10. - papAnu4.mm10.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from papAnu4 to mm10 through the recip.best net. - mm10.papAnu4.rbest.net.gz: mm10-referenced recip.best net. - mm10.papAnu4.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/papAnu4.mm10.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory - axtRBestNet/ 2019-05-23 10:17 - md5sum.txt 2018-01-09 14:38 244 mm10.papAnu4.rbest.chain.gz 2018-01-09 14:35 64M mm10.papAnu4.rbest.net.gz 2018-01-09 14:33 91M papAnu4.mm10.rbest.chain.gz 2018-01-09 14:36 64M papAnu4.mm10.rbest.net.gz 2018-01-09 14:38 137M