This directory contains reciprocal-best netted chains for panPan3-hg38. - panPan3.hg38.rbest.net.gz: panPan3-referenced recip.best net to hg38. - panPan3.hg38.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from panPan3 to hg38 through the recip.best net. - hg38.panPan3.rbest.net.gz: hg38-referenced recip.best net. - hg38.panPan3.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/panPan3.hg38.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory - hg38.panPan3.rbest.net.gz 2020-06-15 16:55 18M panPan3.hg38.rbest.net.gz 2020-06-15 16:56 17M panPan3.hg38.rbest.chain.gz 2020-06-15 16:55 11M hg38.panPan3.rbest.chain.gz 2020-06-15 16:55 11M md5sum.txt 2020-06-15 16:56 244 axtRBestNet/ 2020-07-08 09:53 -