This directory contains the Mar. 2007 assembly of the platypus genome
(ornAna1, WUSTL version 5.0.1), as well as repeat annotations and GenBank
sequences.
This assembly was produced by the Genome Sequencing Center at the
Washington University School of Medicine in St. Louis.
For more information on the platypus genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Ornithorhynchus%20anatinus
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ornAna1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ornAna1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The Platypus sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing these data
if the providers of these data are properly acknowledged. See
http://genome.ucsc.edu/goldenPath/credits.html for credit information.
3. The centers producing the data reserve the right to publish the initial
large-scale analyses of the data set, including large-scale identification
of regions of evolutionary conservation and large-scale genomic assembly.
Large-scale refers to regions with size on the order of a chromosome (that
is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-22 14:19 31M
xenoRefSeqAli.sql 2020-08-22 14:19 2.1K
xenoRefGene.txt.gz 2020-08-22 14:19 30M
xenoRefGene.sql 2020-08-22 14:19 2.0K
xenoRefFlat.txt.gz 2020-08-22 14:19 27M
xenoRefFlat.sql 2020-08-22 14:19 1.7K
xenoMrna.txt.gz 2020-08-22 14:19 306M
xenoMrna.sql 2020-08-22 14:19 2.1K
wssdCoverage.txt.gz 2007-09-21 12:13 32K
wssdCoverage.sql 2007-09-21 12:13 1.3K
trackDb.txt.gz 2023-03-28 13:51 40K
trackDb.sql 2023-03-28 13:51 2.1K
tableList.txt.gz 2024-11-24 03:13 4.6K
tableList.sql 2024-11-24 03:13 1.6K
tableDescriptions.txt.gz 2024-11-23 02:03 7.3K
tableDescriptions.sql 2024-11-23 02:03 1.4K
tRNAs.txt.gz 2012-04-23 07:43 25K
tRNAs.sql 2012-04-23 07:43 1.7K
simpleRepeat.txt.gz 2007-05-26 10:27 11M
simpleRepeat.sql 2007-05-26 10:27 1.9K
rmsk.txt.gz 2007-07-26 10:58 118M
rmsk.sql 2007-07-26 10:56 1.9K
refSeqAli.txt.gz 2020-03-01 08:08 22K
refSeqAli.sql 2020-03-01 08:08 2.1K
refGene.txt.gz 2020-08-22 14:19 21K
refGene.sql 2020-08-22 14:19 1.9K
refFlat.txt.gz 2020-08-22 14:19 19K
refFlat.sql 2020-08-22 14:19 1.7K
quality.txt.gz 2008-11-30 12:22 42M
quality.sql 2008-11-30 12:21 1.7K
phastConsElements6way.txt.gz 2007-05-26 10:25 7.0M
phastConsElements6way.sql 2007-05-26 10:25 1.4K
phastCons6way.txt.gz 2007-05-26 10:25 23M
phastCons6way.sql 2007-05-26 10:24 1.7K
netPonAbe2.txt.gz 2008-03-09 05:29 18M
netPonAbe2.sql 2008-03-09 05:29 2.2K
netMonDom5.txt.gz 2009-09-27 11:51 21M
netMonDom5.sql 2009-09-27 11:51 2.3K
netMm10.txt.gz 2013-10-27 19:19 13M
netMm10.sql 2013-10-27 19:19 2.1K
netHg19.txt.gz 2009-10-11 08:36 18M
netHg19.sql 2009-10-11 08:36 2.3K
netGalGal3.txt.gz 2007-05-26 10:23 11M
netGalGal3.sql 2007-05-26 10:22 2.2K
netEquCab2.txt.gz 2009-12-13 13:02 13M
netEquCab2.sql 2009-12-13 13:02 2.3K
netCalJac1.txt.gz 2008-04-24 06:10 17M
netCalJac1.sql 2008-04-24 06:09 2.2K
netBosTau7.txt.gz 2012-06-16 23:10 17M
netBosTau7.sql 2012-06-16 23:10 2.0K
netAnoCar2.txt.gz 2011-10-16 03:59 8.0M
netAnoCar2.sql 2011-10-16 03:59 2.0K
nestedRepeats.txt.gz 2007-10-02 11:46 11M
nestedRepeats.sql 2007-10-02 11:46 1.9K
multiz6waySummary.txt.gz 2011-08-21 03:55 6.8M
multiz6waySummary.sql 2011-08-21 03:55 1.5K
multiz6wayFrames.txt.gz 2011-08-21 03:56 18M
multiz6wayFrames.sql 2011-08-21 03:56 1.7K
multiz6way.txt.gz 2011-08-21 03:55 39M
multiz6way.sql 2011-08-21 03:55 1.5K
mrnaOrientInfo.txt.gz 2020-03-01 08:07 12K
mrnaOrientInfo.sql 2020-03-01 08:07 1.8K
microsat.txt.gz 2015-08-23 22:40 96K
microsat.sql 2015-08-23 22:40 1.5K
intronEst.txt.gz 2011-04-18 07:22 196K
intronEst.sql 2011-04-18 07:22 2.0K
history.txt.gz 2007-05-26 10:21 734
history.sql 2007-05-26 10:21 1.4K
hgFindSpec.txt.gz 2023-03-28 13:51 872
hgFindSpec.sql 2023-03-28 13:51 1.8K
grp.txt.gz 2014-03-02 04:14 208
grp.sql 2014-03-02 04:14 1.4K
gold.txt.gz 2007-05-26 10:21 5.7M
gold.sql 2007-05-26 10:20 1.6K
genomicSuperDups.txt.gz 2007-12-13 12:02 13M
genomicSuperDups.sql 2007-12-13 12:02 2.6K
gc5Base.txt.gz 2007-05-26 10:20 12M
gc5Base.sql 2007-05-26 10:20 1.7K
gbLoaded.txt.gz 2020-08-22 14:19 109K
gbLoaded.sql 2020-08-22 14:19 1.6K
gap.txt.gz 2007-05-26 10:19 2.7M
gap.sql 2007-05-26 10:19 1.5K
extFile.txt.gz 2011-08-21 03:56 85
extFile.sql 2011-08-21 03:56 1.4K
estOrientInfo.txt.gz 2011-04-11 17:24 418K
estOrientInfo.sql 2011-04-11 17:24 1.8K
ensemblToGeneName.txt.gz 2019-02-10 03:42 72K
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
ensemblSource.txt.gz 2019-02-10 03:42 95K
ensemblSource.sql 2019-02-10 03:42 1.4K
ensPep.txt.gz 2019-02-10 03:42 4.9M
ensPep.sql 2019-02-10 03:42 1.3K
ensGtp.txt.gz 2019-02-10 03:42 323K
ensGtp.sql 2019-02-10 03:42 1.4K
ensGene.txt.gz 2019-02-10 03:42 2.0M
ensGene.sql 2019-02-10 03:42 1.9K
cytoBandIdeo.txt.gz 2013-04-28 19:34 1.0M
cytoBandIdeo.sql 2013-04-28 19:34 1.5K
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:36 2.3M
cpgIslandExtUnmasked.sql 2014-06-01 17:36 1.7K
cpgIslandExt.txt.gz 2011-12-04 15:03 1.6M
cpgIslandExt.sql 2011-12-04 15:03 1.6K
chromInfo.txt.gz 2007-05-26 10:19 1.0M
chromInfo.sql 2007-05-26 10:19 1.2K
chromAlias.txt.gz 2017-09-03 05:42 2.7M
chromAlias.sql 2017-09-03 05:42 1.4K
chainPonAbe2Link.txt.gz 2008-03-09 05:25 202M
chainPonAbe2Link.sql 2008-03-09 05:21 1.4K
chainPonAbe2.txt.gz 2008-03-09 05:21 42M
chainPonAbe2.sql 2008-03-09 05:20 1.7K
chainMonDom5Link.txt.gz 2009-09-27 11:52 327M
chainMonDom5Link.sql 2009-09-27 11:51 1.5K
chainMonDom5.txt.gz 2009-09-27 11:54 84M
chainMonDom5.sql 2009-09-27 11:54 1.8K
chainMm10Link.txt.gz 2013-10-27 19:19 176M
chainMm10Link.sql 2013-10-27 19:18 1.5K
chainMm10.txt.gz 2013-10-27 19:18 30M
chainMm10.sql 2013-10-27 19:18 1.7K
chainHg19Link.txt.gz 2009-10-11 08:37 219M
chainHg19Link.sql 2009-10-11 08:37 1.5K
chainHg19.txt.gz 2009-10-11 08:36 44M
chainHg19.sql 2009-10-11 08:36 1.8K
chainGalGal3Link.txt.gz 2007-05-26 09:45 85M
chainGalGal3Link.sql 2007-05-26 09:44 1.4K
chainGalGal3.txt.gz 2007-05-26 09:44 22M
chainGalGal3.sql 2007-05-26 09:44 1.7K
chainEquCab2Link.txt.gz 2009-12-13 13:03 148M
chainEquCab2Link.sql 2009-12-13 13:03 1.5K
chainEquCab2.txt.gz 2009-12-13 13:02 31M
chainEquCab2.sql 2009-12-13 13:02 1.8K
chainCalJac1Link.txt.gz 2008-04-24 06:02 183M
chainCalJac1Link.sql 2008-04-24 05:55 1.4K
chainCalJac1.txt.gz 2008-04-24 05:54 40M
chainCalJac1.sql 2008-04-24 05:52 1.7K
chainBosTau7Link.txt.gz 2012-06-16 23:15 255M
chainBosTau7Link.sql 2012-06-16 23:11 1.5K
chainBosTau7.txt.gz 2012-06-16 23:08 46M
chainBosTau7.sql 2012-06-16 23:07 1.6K
chainAnoCar2Link.txt.gz 2011-10-16 03:58 52M
chainAnoCar2Link.sql 2011-10-16 03:58 1.5K
chainAnoCar2.txt.gz 2011-10-16 03:59 12M
chainAnoCar2.sql 2011-10-16 03:59 1.6K
blastHg18KG.txt.gz 2009-12-20 15:22 2.2M
blastHg18KG.sql 2009-12-20 15:22 2.3K
bigFiles.txt.gz 2024-11-24 03:13 33
bigFiles.sql 2024-11-24 03:13 1.4K
augustusGene.txt.gz 2015-07-26 17:13 1.9M
augustusGene.sql 2015-07-26 17:13 1.9K
all_mrna.txt.gz 2018-04-01 07:38 14K
all_mrna.sql 2018-04-01 07:38 2.1K
all_est.txt.gz 2011-04-11 17:24 1.4M
all_est.sql 2011-04-11 17:24 2.3K