This directory contains reciprocal-best netted chains for neoSch1-panTro6.
- neoSch1.panTro6.rbest.net.gz: neoSch1-referenced recip.best net to panTro6.
- neoSch1.panTro6.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from neoSch1 to panTro6 through the recip.best net.
- panTro6.neoSch1.rbest.net.gz: panTro6-referenced recip.best net.
- panTro6.neoSch1.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/neoSch1.panTro6.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
panTro6.neoSch1.rbest.net.gz 2020-07-12 12:21 152M
panTro6.neoSch1.rbest.chain.gz 2020-07-12 12:23 79M
neoSch1.panTro6.rbest.net.gz 2020-07-12 12:25 132M
neoSch1.panTro6.rbest.chain.gz 2020-07-12 12:24 79M
md5sum.txt 2020-07-12 12:25 256
axtRBestNet/ 2020-11-23 13:37 -