This directory contains reciprocal-best netted chains for monDom5-rn6.

 - monDom5.rn6.rbest.net.gz: monDom5-referenced recip.best net to rn6.
 - monDom5.rn6.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from monDom5 to rn6 through the recip.best net.

 - rn6.monDom5.rbest.net.gz: rn6-referenced recip.best net.
 - rn6.monDom5.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.monDom5.rn6.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                       Last modified      Size  Description
      Parent Directory                                -   
      axtRBestNet/               2017-01-15 03:35    -   
      md5sum.txt                 2017-01-13 09:35  240   
      rn6.monDom5.rbest.chain.gz 2017-01-13 09:34   18M  
      monDom5.rn6.rbest.chain.gz 2017-01-13 09:34   18M  
      rn6.monDom5.rbest.net.gz   2017-01-13 09:33   29M  
      monDom5.rn6.rbest.net.gz   2017-01-13 09:35   34M