This directory contains a dump of the UCSC genome annotation
database for the Oct. 2006 assembly of the opossum genome (UCSC
version monDom5) from the Broad Institute at MIT and Harvard.
The directory is updated nightly. The .txt.gz files contain the
database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom5
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/monDom5/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-----------------------------------------------------------
All the tables in this directory are freely usable for any
purpose. The opossum sequence is made freely available before scientific
publication with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of these data (The
Broad Institute) are properly acknowledged.
3. The centers producing the data reserve the right to publish the
initial large-scale analyses of the data set, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-11-17 03:26 33
cytoBandIdeo.txt.gz 2013-04-28 19:07 155
chromInfo.txt.gz 2009-07-20 15:58 164
chromAlias.txt.gz 2017-09-03 05:42 205
grp.txt.gz 2014-03-02 04:14 208
extFile.txt.gz 2009-07-20 16:05 223
hgFindSpec.txt.gz 2024-01-31 15:13 1.0K
nscanPep.sql 2009-07-20 16:05 1.1K
genscanPep.sql 2009-07-20 15:58 1.2K
chromInfo.sql 2009-07-20 15:58 1.2K
extFile.sql 2009-07-20 16:05 1.3K
ensPep.sql 2019-02-10 03:42 1.3K
ensemblSource.sql 2019-02-10 03:42 1.4K
windowmaskerSdust.sql 2009-07-20 15:59 1.4K
bigFiles.sql 2024-11-17 03:26 1.4K
grp.sql 2014-03-02 04:14 1.4K
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
ensGtp.sql 2019-02-10 03:42 1.4K
chromAlias.sql 2017-09-03 05:42 1.4K
history.sql 2009-07-20 16:05 1.4K
tableDescriptions.sql 2024-11-16 02:03 1.4K
chainAilMel1Link.sql 2010-12-10 12:31 1.5K
chainBosTau7Link.sql 2012-06-16 19:47 1.5K
chainCalJac3Link.sql 2010-12-10 11:03 1.5K
chainFelCat4Link.sql 2010-12-10 11:51 1.5K
chainLoxAfr3Link.sql 2011-11-21 19:12 1.5K
chainMelGal1Link.sql 2011-11-06 14:53 1.5K
chainOryCun2Link.sql 2010-12-10 11:08 1.5K
chainOviAri1Link.sql 2011-04-25 09:58 1.5K
chainPanTro3Link.sql 2011-06-12 11:15 1.5K
chainSusScr2Link.sql 2010-12-10 11:45 1.5K
microsat.sql 2015-08-23 21:56 1.5K
phastConsElements9way.sql 2010-12-10 11:22 1.5K
gap.sql 2009-07-20 15:57 1.5K
cytoBandIdeo.sql 2013-04-28 19:07 1.5K
chainRn6Link.sql 2017-03-27 16:49 1.5K
chainHg19Link.sql 2010-12-10 11:25 1.5K
chainMm10Link.sql 2013-10-27 18:38 1.5K
multiz9way.sql 2010-12-10 11:22 1.5K
chainCanFam2Link.sql 2010-12-10 11:00 1.5K
chainDanRer5Link.sql 2010-12-10 12:30 1.5K
chainEquCab2Link.sql 2010-12-10 12:05 1.5K
chainGalGal3Link.sql 2010-12-10 10:57 1.5K
chainMelGal5Link.sql 2017-03-20 09:11 1.5K
chainOrnAna1Link.sql 2010-12-10 11:49 1.5K
chainPonAbe2Link.sql 2010-12-10 11:36 1.5K
chainXenTro9Link.sql 2017-12-14 12:35 1.5K
chainXenTro3Link.sql 2019-06-02 03:22 1.5K
chainCerSim1Link.sql 2013-01-29 23:26 1.6K
chainPetMar2Link.sql 2013-01-24 03:47 1.6K
chainRheMac3Link.sql 2012-12-02 18:42 1.6K
chainMm39Link.sql 2020-11-25 07:49 1.6K
tableList.sql 2024-11-17 03:26 1.6K
chainNeoSch1Link.sql 2020-07-17 10:30 1.6K
multiz9waySummary.sql 2010-12-10 11:57 1.6K
genscan.sql 2009-07-20 15:57 1.6K
gold.sql 2009-07-20 16:06 1.6K
gbLoaded.sql 2020-08-19 18:55 1.6K
cpgIslandExt.sql 2009-07-20 15:58 1.6K
chainAilMel1.sql 2010-12-10 11:02 1.6K
chainBosTau7.sql 2012-06-16 20:27 1.6K
chainCalJac3.sql 2010-12-10 11:20 1.6K
chainFelCat4.sql 2010-12-10 11:48 1.6K
chainLoxAfr3.sql 2011-11-21 19:08 1.6K
chainMelGal1.sql 2011-11-06 14:55 1.6K
chainOryCun2.sql 2010-12-10 12:27 1.6K
chainOviAri1.sql 2011-04-25 10:01 1.6K
chainPanTro3.sql 2011-06-12 11:24 1.6K
chainSusScr2.sql 2010-12-10 11:24 1.6K
tRNAs.sql 2012-04-16 03:06 1.7K
estOrientInfo.sql 2011-04-18 07:22 1.7K
chainRn6.sql 2017-03-27 16:45 1.7K
chainMm10.sql 2013-10-27 18:38 1.7K
chainMelGal5.sql 2017-03-20 09:11 1.7K
chainXenTro9.sql 2017-12-14 12:34 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 17:03 1.7K
chainXenTro3.sql 2019-06-02 03:21 1.7K
chainCerSim1.sql 2013-01-29 23:32 1.7K
chainPetMar2.sql 2013-01-24 03:48 1.7K
chainRheMac3.sql 2012-12-02 18:39 1.7K
gc5Base.sql 2009-07-20 16:01 1.7K
quality.sql 2009-07-20 15:58 1.7K
chainMm39.sql 2020-11-25 07:47 1.7K
refFlat.sql 2020-08-19 18:28 1.7K
chainNeoSch1.sql 2020-07-17 10:23 1.7K
xenoRefFlat.sql 2020-08-19 18:32 1.7K
hgFindSpec.sql 2024-01-31 15:13 1.8K
chainHg19.sql 2010-12-10 12:25 1.8K
chainCanFam2.sql 2010-12-10 11:51 1.8K
chainDanRer5.sql 2010-12-10 11:02 1.8K
chainEquCab2.sql 2010-12-10 11:23 1.8K
chainGalGal3.sql 2010-12-10 11:53 1.8K
chainOrnAna1.sql 2010-12-10 11:34 1.8K
chainPonAbe2.sql 2010-12-10 12:19 1.8K
mrnaOrientInfo.sql 2020-08-19 18:32 1.8K
multiz9wayFrames.sql 2010-12-10 12:25 1.8K
rmsk.sql 2009-07-20 16:02 1.9K
phastCons9way.sql 2010-12-10 11:03 1.9K
nscanGene.sql 2009-07-20 16:02 1.9K
nestedRepeats.sql 2009-07-20 15:57 1.9K
simpleRepeat.sql 2009-07-20 16:05 1.9K
ensGene.sql 2019-02-10 03:42 1.9K
augustusGene.sql 2015-07-26 16:46 1.9K
refGene.sql 2020-08-19 18:28 1.9K
xenoRefGene.sql 2020-08-19 18:32 2.0K
netAilMel1.sql 2010-12-10 12:33 2.0K
netBosTau7.sql 2012-06-16 20:25 2.0K
netCalJac3.sql 2010-12-10 12:29 2.0K
netFelCat4.sql 2010-12-10 11:51 2.0K
netLoxAfr3.sql 2011-11-21 19:12 2.0K
netMelGal1.sql 2011-11-06 14:42 2.0K
netOryCun2.sql 2010-12-10 11:03 2.0K
netOviAri1.sql 2011-04-25 10:01 2.0K
netPanTro3.sql 2011-06-12 11:15 2.0K
netSusScr2.sql 2010-12-10 11:57 2.0K
all_est.sql 2011-04-18 07:18 2.0K
intronEst.sql 2011-04-18 07:19 2.0K
trackDb.sql 2024-01-31 15:13 2.1K
netRn6.sql 2017-03-27 17:27 2.1K
netMm10.sql 2013-10-27 18:43 2.1K
netMelGal5.sql 2017-03-20 09:13 2.1K
netXenTro3.sql 2019-06-02 03:26 2.1K
netXenTro9.sql 2017-12-14 12:38 2.1K
netCerSim1.sql 2013-01-29 23:26 2.1K
netPetMar2.sql 2013-01-24 03:47 2.1K
netRheMac3.sql 2012-12-02 18:39 2.1K
netMm39.sql 2020-11-25 07:50 2.1K
netNeoSch1.sql 2020-07-17 10:31 2.1K
all_mrna.sql 2020-08-19 18:14 2.1K
xenoMrna.sql 2020-08-19 18:14 2.1K
refSeqAli.sql 2020-08-19 18:45 2.1K
blastHg18KG.sql 2009-07-20 16:02 2.1K
xenoRefSeqAli.sql 2020-08-19 18:45 2.1K
netHg19.sql 2010-12-10 11:53 2.3K
netCanFam2.sql 2010-12-10 11:48 2.3K
netDanRer5.sql 2010-12-10 12:33 2.3K
netEquCab2.sql 2010-12-10 11:57 2.3K
netGalGal3.sql 2010-12-10 11:45 2.3K
netOrnAna1.sql 2010-12-10 11:56 2.3K
netPonAbe2.sql 2010-12-10 11:22 2.3K
history.txt.gz 2009-07-20 16:05 3.7K
estOrientInfo.txt.gz 2011-04-18 07:22 6.6K
tableList.txt.gz 2024-11-17 03:26 7.2K
tableDescriptions.txt.gz 2024-11-16 02:03 9.1K
intronEst.txt.gz 2011-04-18 07:19 9.5K
tRNAs.txt.gz 2012-04-16 03:06 12K
all_est.txt.gz 2011-04-18 07:18 17K
mrnaOrientInfo.txt.gz 2020-08-19 18:32 31K
refFlat.txt.gz 2020-08-19 18:28 38K
refSeqAli.txt.gz 2020-08-19 18:45 40K
refGene.txt.gz 2020-08-19 18:28 43K
all_mrna.txt.gz 2020-08-19 18:14 61K
trackDb.txt.gz 2024-01-31 15:13 73K
ensemblSource.txt.gz 2019-02-10 03:42 96K
ensemblToGeneName.txt.gz 2019-02-10 03:42 104K
gbLoaded.txt.gz 2020-08-19 18:55 111K
ensGtp.txt.gz 2019-02-10 03:42 327K
cpgIslandExt.txt.gz 2009-07-20 15:58 484K
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:03 619K
microsat.txt.gz 2015-08-23 21:56 1.0M
gap.txt.gz 2009-07-20 15:57 1.0M
gold.txt.gz 2009-07-20 16:06 1.3M
augustusGene.txt.gz 2015-07-26 16:46 2.0M
genscan.txt.gz 2009-07-20 15:57 2.3M
ensGene.txt.gz 2019-02-10 03:42 2.5M
netPetMar2.txt.gz 2013-01-24 03:47 2.8M
blastHg18KG.txt.gz 2009-07-20 16:02 3.6M
nscanGene.txt.gz 2009-07-20 16:02 3.6M
ensPep.txt.gz 2019-02-10 03:42 6.4M
netXenTro3.txt.gz 2019-06-02 03:26 7.5M
phastConsElements9way.txt.gz 2010-12-10 11:22 7.8M
netXenTro9.txt.gz 2017-12-14 12:38 7.8M
genscanPep.txt.gz 2009-07-20 15:58 7.9M
chainMelGal1.txt.gz 2011-11-06 14:55 7.9M
netMelGal5.txt.gz 2017-03-20 09:13 8.5M
netMelGal1.txt.gz 2011-11-06 14:42 8.5M
netDanRer5.txt.gz 2010-12-10 12:33 8.8M
netGalGal3.txt.gz 2010-12-10 11:45 9.3M
chainMelGal5.txt.gz 2017-03-20 09:11 12M
nscanPep.txt.gz 2009-07-20 16:05 12M
chainPetMar2.txt.gz 2013-01-24 03:48 13M
gc5Base.txt.gz 2009-07-20 16:02 14M
netMm39.txt.gz 2020-11-25 07:50 15M
netOviAri1.txt.gz 2011-04-25 10:01 16M
netSusScr2.txt.gz 2010-12-10 11:57 17M
netOryCun2.txt.gz 2010-12-10 11:03 18M
multiz9wayFrames.txt.gz 2010-12-10 12:25 18M
netFelCat4.txt.gz 2010-12-10 11:51 18M
chainDanRer5.txt.gz 2010-12-10 11:02 19M
netBosTau7.txt.gz 2012-06-16 20:26 20M
netCalJac3.txt.gz 2010-12-10 12:30 21M
netRheMac3.txt.gz 2012-12-02 18:39 21M
netAilMel1.txt.gz 2010-12-10 12:33 21M
netLoxAfr3.txt.gz 2011-11-21 19:12 22M
nestedRepeats.txt.gz 2009-07-20 15:57 23M
xenoRefFlat.txt.gz 2020-08-19 18:32 23M
netOrnAna1.txt.gz 2010-12-10 11:56 23M
netMm10.txt.gz 2013-10-27 18:44 23M
netRn6.txt.gz 2017-03-27 17:27 24M
xenoRefSeqAli.txt.gz 2020-08-19 18:45 25M
xenoRefGene.txt.gz 2020-08-19 18:32 26M
simpleRepeat.txt.gz 2009-07-20 16:05 26M
netCanFam2.txt.gz 2010-12-10 11:48 26M
netPonAbe2.txt.gz 2010-12-10 11:23 28M
netEquCab2.txt.gz 2010-12-10 11:57 28M
chainFelCat4.txt.gz 2010-12-10 11:48 28M
netCerSim1.txt.gz 2013-01-29 23:26 29M
netNeoSch1.txt.gz 2020-07-17 10:31 33M
chainAilMel1.txt.gz 2010-12-10 11:02 33M
multiz9waySummary.txt.gz 2010-12-10 11:57 33M
chainOviAri1.txt.gz 2011-04-25 10:01 33M
netPanTro3.txt.gz 2011-06-12 11:15 34M
netHg19.txt.gz 2010-12-10 11:53 34M
chainMelGal1Link.txt.gz 2011-11-06 14:53 36M
chainCanFam2.txt.gz 2010-12-10 11:51 39M
chainGalGal3.txt.gz 2010-12-10 11:53 40M
chainMm39.txt.gz 2020-11-25 07:47 41M
chainMelGal5Link.txt.gz 2017-03-20 09:11 42M
chainPetMar2Link.txt.gz 2013-01-24 03:47 43M
quality.txt.gz 2009-07-20 15:59 64M
phastCons9way.txt.gz 2010-12-10 11:03 76M
chainOrnAna1.txt.gz 2010-12-10 11:34 88M
multiz9way.txt.gz 2010-12-10 11:22 93M
chainDanRer5Link.txt.gz 2010-12-10 12:30 98M
chainRn6.txt.gz 2017-03-27 16:46 103M
chainOviAri1Link.txt.gz 2011-04-25 09:59 114M
chainGalGal3Link.txt.gz 2010-12-10 10:58 144M
chainSusScr2.txt.gz 2010-12-10 11:25 153M
chainFelCat4Link.txt.gz 2010-12-10 11:52 165M
chainMm10.txt.gz 2013-10-27 18:38 198M
rmsk.txt.gz 2009-07-20 16:03 199M
windowmaskerSdust.txt.gz 2009-07-20 16:00 204M
chainAilMel1Link.txt.gz 2010-12-10 12:31 213M
xenoMrna.txt.gz 2020-08-19 18:14 213M
chainXenTro3.txt.gz 2019-06-02 03:21 223M
chainXenTro9.txt.gz 2017-12-14 12:34 230M
chainMm39Link.txt.gz 2020-11-25 07:49 240M
chainBosTau7.txt.gz 2012-06-16 20:30 250M
chainCerSim1.txt.gz 2013-01-29 23:32 253M
chainEquCab2.txt.gz 2010-12-10 11:23 254M
chainCalJac3.txt.gz 2010-12-10 11:21 272M
chainNeoSch1.txt.gz 2020-07-17 10:23 318M
chainOrnAna1Link.txt.gz 2010-12-10 11:49 327M
chainCanFam2Link.txt.gz 2010-12-10 11:01 330M
chainOryCun2.txt.gz 2010-12-10 12:28 337M
chainHg19.txt.gz 2010-12-10 12:26 340M
chainPanTro3.txt.gz 2011-06-12 11:25 344M
chainLoxAfr3.txt.gz 2011-11-21 19:09 420M
chainPonAbe2.txt.gz 2010-12-10 12:20 430M
chainSusScr2Link.txt.gz 2010-12-10 11:46 520M
chainRheMac3.txt.gz 2012-12-02 18:40 559M
chainRn6Link.txt.gz 2017-03-27 16:57 749M
chainCalJac3Link.txt.gz 2010-12-10 11:05 758M
chainBosTau7Link.txt.gz 2012-06-16 19:57 776M
chainXenTro3Link.txt.gz 2019-06-02 03:23 788M
chainXenTro9Link.txt.gz 2017-12-14 12:36 809M
chainOryCun2Link.txt.gz 2010-12-10 11:10 966M
chainEquCab2Link.txt.gz 2010-12-10 12:07 1.0G
chainCerSim1Link.txt.gz 2013-01-29 23:28 1.0G
chainMm10Link.txt.gz 2013-10-27 18:40 1.1G
chainLoxAfr3Link.txt.gz 2011-11-21 19:15 1.1G
chainNeoSch1Link.txt.gz 2020-07-17 10:30 1.1G
chainPanTro3Link.txt.gz 2011-06-12 11:18 1.2G
chainHg19Link.txt.gz 2010-12-10 11:28 1.2G
chainPonAbe2Link.txt.gz 2010-12-10 11:39 1.2G
chainRheMac3Link.txt.gz 2012-12-02 18:44 1.3G