This directory contains a dump of the UCSC genome annotation 
database for the Jan. 2006 assembly of the opossum genome (UCSC
version monDom4) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom4
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom4/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

-----------------------------------------------------------
All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                          Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-11-24 03:16 33 bigFiles.sql 2024-11-24 03:16 1.4K tableList.txt.gz 2024-11-24 03:16 12K tableList.sql 2024-11-24 03:16 1.6K tableDescriptions.txt.gz 2024-11-23 02:03 6.7K tableDescriptions.sql 2024-11-23 02:03 1.4K hgFindSpec.txt.gz 2023-03-28 13:51 894 hgFindSpec.sql 2023-03-28 13:51 1.8K trackDb.txt.gz 2023-03-28 13:51 39K trackDb.sql 2023-03-28 13:51 2.1K gbLoaded.txt.gz 2020-08-22 11:38 43K gbLoaded.sql 2020-08-22 11:38 1.6K xenoRefSeqAli.txt.gz 2020-08-22 11:38 27M xenoRefSeqAli.sql 2020-08-22 11:38 2.1K refSeqAli.txt.gz 2020-08-22 11:38 40K refSeqAli.sql 2020-08-22 11:38 2.1K mrnaOrientInfo.txt.gz 2020-08-22 11:38 32K mrnaOrientInfo.sql 2020-08-22 11:38 1.8K xenoRefFlat.txt.gz 2020-08-22 11:38 27M xenoRefFlat.sql 2020-08-22 11:38 1.7K xenoRefGene.txt.gz 2020-08-22 11:38 30M xenoRefGene.sql 2020-08-22 11:38 2.0K refFlat.txt.gz 2020-08-22 11:37 38K refFlat.sql 2020-08-22 11:37 1.7K refGene.txt.gz 2020-08-22 11:37 43K refGene.sql 2020-08-22 11:37 1.9K chr3_mrna.txt.gz 2019-03-17 11:25 7.4K chr3_mrna.sql 2019-03-17 11:25 2.1K all_mrna.txt.gz 2019-03-17 11:25 62K all_mrna.sql 2019-03-17 11:25 2.1K chr1_mrna.txt.gz 2017-10-15 08:16 24K chr1_mrna.sql 2017-10-15 08:16 2.1K chr2_mrna.txt.gz 2017-10-15 08:15 5.8K chr2_mrna.sql 2017-10-15 08:15 2.1K chrUn_mrna.txt.gz 2017-06-19 06:22 2.8K chrUn_mrna.sql 2017-06-19 06:22 2.1K chr4_mrna.txt.gz 2016-09-18 10:24 1.8K chr4_mrna.sql 2016-09-18 10:24 2.1K chr8_mrna.txt.gz 2016-08-07 08:49 13K chr8_mrna.sql 2016-08-07 08:49 2.1K chr5_mrna.txt.gz 2016-07-10 08:47 1.5K chr5_mrna.sql 2016-07-10 08:47 2.1K estOrientInfo.txt.gz 2016-05-15 10:43 6.5K estOrientInfo.sql 2016-05-15 10:43 1.8K chrX_mrna.txt.gz 2016-05-15 10:43 2.4K chrX_mrna.sql 2016-05-15 10:43 2.1K chrX_intronEst.txt.gz 2016-05-15 10:43 39 chrX_intronEst.sql 2016-05-15 10:43 2.1K chrX_est.txt.gz 2016-05-15 10:43 100 chrX_est.sql 2016-05-15 10:43 2.1K chrUn_intronEst.txt.gz 2016-05-15 10:43 188 chrUn_intronEst.sql 2016-05-15 10:43 2.1K chrUn_est.txt.gz 2016-05-15 10:43 3.1K chrUn_est.sql 2016-05-15 10:43 2.1K chr8_intronEst.txt.gz 2016-05-15 10:43 565 chr8_intronEst.sql 2016-05-15 10:43 2.1K chr8_est.txt.gz 2016-05-15 10:43 1.1K chr8_est.sql 2016-05-15 10:43 2.1K chr7_mrna.txt.gz 2016-05-15 10:43 1.0K chr7_mrna.sql 2016-05-15 10:43 2.1K chr7_intronEst.txt.gz 2016-05-15 10:43 823 chr7_intronEst.sql 2016-05-15 10:43 2.1K chr7_est.txt.gz 2016-05-15 10:43 1.0K chr7_est.sql 2016-05-15 10:43 2.1K chr6_mrna.txt.gz 2016-05-15 10:43 2.8K chr6_mrna.sql 2016-05-15 10:43 2.1K chr6_intronEst.txt.gz 2016-05-15 10:43 616 chr6_intronEst.sql 2016-05-15 10:43 2.1K chr6_est.txt.gz 2016-05-15 10:43 866 chr6_est.sql 2016-05-15 10:43 2.1K chr5_intronEst.txt.gz 2016-05-15 10:43 910 chr5_intronEst.sql 2016-05-15 10:43 2.1K chr5_est.txt.gz 2016-05-15 10:43 1.3K chr5_est.sql 2016-05-15 10:43 2.1K chr4_intronEst.txt.gz 2016-05-15 10:43 1.1K chr4_intronEst.sql 2016-05-15 10:43 2.1K chr4_est.txt.gz 2016-05-15 10:43 1.3K chr4_est.sql 2016-05-15 10:43 2.1K chr3_intronEst.txt.gz 2016-05-15 10:43 1.1K chr3_intronEst.sql 2016-05-15 10:43 2.1K chr3_est.txt.gz 2016-05-15 10:43 1.6K chr3_est.sql 2016-05-15 10:43 2.1K chr2_intronEst.txt.gz 2016-05-15 10:43 2.0K chr2_intronEst.sql 2016-05-15 10:43 2.1K chr2_est.txt.gz 2016-05-15 10:43 2.7K chr2_est.sql 2016-05-15 10:43 2.1K chr1_intronEst.txt.gz 2016-05-15 10:43 2.8K chr1_intronEst.sql 2016-05-15 10:43 2.1K chr1_est.txt.gz 2016-05-15 10:43 4.1K chr1_est.sql 2016-05-15 10:43 2.1K all_est.txt.gz 2016-05-15 10:43 16K all_est.sql 2016-05-15 10:43 2.1K xenoMrna.txt.gz 2016-02-21 20:06 268M xenoMrna.sql 2016-02-21 20:06 2.3K microsat.txt.gz 2015-08-23 21:48 1.0M microsat.sql 2015-08-23 21:48 1.5K augustusGene.txt.gz 2015-07-26 16:38 2.0M augustusGene.sql 2015-07-26 16:38 1.9K cpgIslandExtUnmasked.txt.gz 2014-06-01 16:57 484K cpgIslandExtUnmasked.sql 2014-06-01 16:57 1.7K grp.txt.gz 2014-03-02 04:14 344 grp.sql 2014-03-02 04:14 1.4K history.txt.gz 2010-07-04 18:22 1.7K history.sql 2010-07-04 18:22 1.6K netCavPor3.txt.gz 2008-06-13 08:02 30M netCavPor3.sql 2008-06-13 08:01 2.2K chrX_chainCavPor3Link.txt.gz 2008-06-13 08:01 23M chrX_chainCavPor3Link.sql 2008-06-13 08:01 1.4K chrX_chainCavPor3.txt.gz 2008-06-13 08:01 5.2M chrX_chainCavPor3.sql 2008-06-13 08:00 1.7K chrUn_chainCavPor3Link.txt.gz 2008-06-13 07:53 261M chrUn_chainCavPor3Link.sql 2008-06-13 07:48 1.4K chrUn_chainCavPor3.txt.gz 2008-06-13 07:47 60M chrUn_chainCavPor3.sql 2008-06-13 07:46 1.7K chr8_chainCavPor3Link.txt.gz 2008-06-13 07:44 75M chr8_chainCavPor3Link.sql 2008-06-13 07:42 1.4K chr8_chainCavPor3.txt.gz 2008-06-13 07:42 14M chr8_chainCavPor3.sql 2008-06-13 07:42 1.7K chr7_chainCavPor3Link.txt.gz 2008-06-13 07:40 56M chr7_chainCavPor3Link.sql 2008-06-13 07:39 1.4K chr7_chainCavPor3.txt.gz 2008-06-13 07:39 11M chr7_chainCavPor3.sql 2008-06-13 07:38 1.7K chr6_chainCavPor3Link.txt.gz 2008-06-13 07:37 46M chr6_chainCavPor3Link.sql 2008-06-13 07:36 1.4K chr6_chainCavPor3.txt.gz 2008-06-13 07:36 8.2M chr6_chainCavPor3.sql 2008-06-13 07:36 1.7K chr5_chainCavPor3Link.txt.gz 2008-06-13 07:32 146M chr5_chainCavPor3Link.sql 2008-06-13 07:29 1.4K chr5_chainCavPor3.txt.gz 2008-06-13 07:29 17M chr5_chainCavPor3.sql 2008-06-13 07:28 1.7K chr4_chainCavPor3Link.txt.gz 2008-06-13 07:16 422M chr4_chainCavPor3Link.sql 2008-06-13 07:07 1.4K chr4_chainCavPor3.txt.gz 2008-06-13 07:04 103M chr4_chainCavPor3.sql 2008-06-13 07:01 1.7K chr3_chainCavPor3Link.txt.gz 2008-06-13 06:49 403M chr3_chainCavPor3Link.sql 2008-06-13 06:38 1.4K chr3_chainCavPor3.txt.gz 2008-06-13 06:35 104M chr3_chainCavPor3.sql 2008-06-13 06:32 1.7K chr2_chainCavPor3Link.txt.gz 2008-06-13 06:26 167M chr2_chainCavPor3Link.sql 2008-06-13 06:21 1.4K chr2_chainCavPor3.txt.gz 2008-06-13 06:21 33M chr2_chainCavPor3.sql 2008-06-13 06:20 1.7K chr1_chainCavPor3Link.txt.gz 2008-06-13 06:11 274M chr1_chainCavPor3Link.sql 2008-06-13 06:03 1.4K chr1_chainCavPor3.txt.gz 2008-06-13 06:01 57M chr1_chainCavPor3.sql 2008-06-13 06:00 1.7K netCalJac1.txt.gz 2008-04-24 05:51 33M netCalJac1.sql 2008-04-24 05:49 2.2K chrX_chainCalJac1Link.txt.gz 2008-04-24 05:49 19M chrX_chainCalJac1Link.sql 2008-04-24 05:48 1.4K chrX_chainCalJac1.txt.gz 2008-04-24 05:48 6.3M chrX_chainCalJac1.sql 2008-04-24 05:48 1.7K chrUn_chainCalJac1Link.txt.gz 2008-04-24 05:40 204M chrUn_chainCalJac1Link.sql 2008-04-24 05:33 1.4K chrUn_chainCalJac1.txt.gz 2008-04-24 05:31 66M chrUn_chainCalJac1.sql 2008-04-24 05:28 1.7K chr8_chainCalJac1Link.txt.gz 2008-04-24 05:26 63M chr8_chainCalJac1Link.sql 2008-04-24 05:24 1.4K chr8_chainCalJac1.txt.gz 2008-04-24 05:24 16M chr8_chainCalJac1.sql 2008-04-24 05:23 1.7K chr7_chainCalJac1Link.txt.gz 2008-04-24 05:21 47M chr7_chainCalJac1Link.sql 2008-04-24 05:20 1.4K chr7_chainCalJac1.txt.gz 2008-04-24 05:20 13M chr7_chainCalJac1.sql 2008-04-24 05:19 1.7K chr6_chainCalJac1Link.txt.gz 2008-04-24 05:18 38M chr6_chainCalJac1Link.sql 2008-04-24 05:16 1.4K chr6_chainCalJac1.txt.gz 2008-04-24 05:16 9.5M chr6_chainCalJac1.sql 2008-04-24 05:16 1.7K chr5_chainCalJac1Link.txt.gz 2008-04-24 05:13 73M chr5_chainCalJac1Link.sql 2008-04-24 05:11 1.4K chr5_chainCalJac1.txt.gz 2008-04-24 05:11 12M chr5_chainCalJac1.sql 2008-04-24 05:10 1.7K chr4_chainCalJac1Link.txt.gz 2008-04-24 04:58 343M chr4_chainCalJac1Link.sql 2008-04-24 04:46 1.4K chr4_chainCalJac1.txt.gz 2008-04-24 04:42 113M chr4_chainCalJac1.sql 2008-04-24 04:38 1.7K chr3_chainCalJac1Link.txt.gz 2008-04-24 04:26 329M chr3_chainCalJac1Link.sql 2008-04-24 04:14 1.4K chr3_chainCalJac1.txt.gz 2008-04-24 04:11 113M chr3_chainCalJac1.sql 2008-04-24 04:07 1.7K chr2_chainCalJac1Link.txt.gz 2008-04-24 04:03 134M chr2_chainCalJac1Link.sql 2008-04-24 03:59 1.4K chr2_chainCalJac1.txt.gz 2008-04-24 03:58 37M chr2_chainCalJac1.sql 2008-04-24 03:57 1.7K chr1_chainCalJac1Link.txt.gz 2008-04-24 03:51 207M chr1_chainCalJac1Link.sql 2008-04-24 03:45 1.4K chr1_chainCalJac1.txt.gz 2008-04-24 03:44 60M chr1_chainCalJac1.sql 2008-04-24 03:42 1.7K chrX_chainPonAbe2Link.txt.gz 2008-03-09 05:20 19M chrX_chainPonAbe2Link.sql 2008-03-09 05:19 1.4K netPonAbe2.txt.gz 2008-03-09 05:19 34M netPonAbe2.sql 2008-03-09 05:18 2.2K chrX_chainPonAbe2.txt.gz 2008-03-09 05:18 5.6M chrX_chainPonAbe2.sql 2008-03-09 05:18 1.7K chrUn_chainPonAbe2Link.txt.gz 2008-03-09 05:14 203M chrUn_chainPonAbe2Link.sql 2008-03-09 05:11 1.4K chr1_chainPonAbe2.txt.gz 2008-03-09 05:10 54M chr1_chainPonAbe2.sql 2008-03-09 05:09 1.7K chr2_chainPonAbe2.txt.gz 2008-03-09 05:08 33M chr2_chainPonAbe2.sql 2008-03-09 05:08 1.7K chr4_chainPonAbe2Link.txt.gz 2008-03-09 05:01 326M chr4_chainPonAbe2Link.sql 2008-03-09 04:56 1.4K chr4_chainPonAbe2.txt.gz 2008-03-09 04:55 101M chr4_chainPonAbe2.sql 2008-03-09 04:53 1.7K chr6_chainPonAbe2.txt.gz 2008-03-09 04:53 8.6M chr6_chainPonAbe2.sql 2008-03-09 04:53 1.7K chr1_chainPonAbe2Link.txt.gz 2008-03-09 04:48 204M chr1_chainPonAbe2Link.sql 2008-03-09 04:44 1.4K chrUn_chainPonAbe2.txt.gz 2008-03-09 04:43 60M chrUn_chainPonAbe2.sql 2008-03-09 04:42 1.7K chr8_chainPonAbe2Link.txt.gz 2008-03-09 04:41 62M chr8_chainPonAbe2Link.sql 2008-03-09 04:40 1.4K chr5_chainPonAbe2Link.txt.gz 2008-03-09 04:39 81M chr5_chainPonAbe2Link.sql 2008-03-09 04:38 1.4K chr5_chainPonAbe2.txt.gz 2008-03-09 04:37 12M chr5_chainPonAbe2.sql 2008-03-09 04:37 1.7K chr3_chainPonAbe2.txt.gz 2008-03-09 04:36 101M chr3_chainPonAbe2.sql 2008-03-09 04:33 1.7K chr2_chainPonAbe2Link.txt.gz 2008-03-09 04:31 132M chr2_chainPonAbe2Link.sql 2008-03-09 04:28 1.4K chr8_chainPonAbe2.txt.gz 2008-03-09 04:28 15M chr8_chainPonAbe2.sql 2008-03-09 04:28 1.7K chr7_chainPonAbe2Link.txt.gz 2008-03-09 04:27 46M chr7_chainPonAbe2Link.sql 2008-03-09 04:27 1.4K chr3_chainPonAbe2Link.txt.gz 2008-03-09 04:21 312M chr3_chainPonAbe2Link.sql 2008-03-09 04:15 1.4K chr7_chainPonAbe2.txt.gz 2008-03-09 04:15 12M chr7_chainPonAbe2.sql 2008-03-09 04:15 1.7K chr6_chainPonAbe2Link.txt.gz 2008-03-09 04:15 38M chr6_chainPonAbe2Link.sql 2008-03-09 04:14 1.4K netMm9.txt.gz 2007-10-04 16:12 23M netMm9.sql 2007-10-04 16:11 2.2K chrX_chainMm9Link.txt.gz 2007-10-04 16:11 12M chrX_chainMm9Link.sql 2007-10-04 16:11 1.4K chrX_chainMm9.txt.gz 2007-10-04 16:11 2.3M chrX_chainMm9.sql 2007-10-04 16:11 1.6K chrUn_chainMm9Link.txt.gz 2007-10-04 16:10 138M chrUn_chainMm9Link.sql 2007-10-04 16:08 1.4K chrUn_chainMm9.txt.gz 2007-10-04 16:07 26M chrUn_chainMm9.sql 2007-10-04 16:07 1.7K chr8_chainMm9Link.txt.gz 2007-10-04 16:07 45M chr8_chainMm9Link.sql 2007-10-04 16:06 1.4K chr8_chainMm9.txt.gz 2007-10-04 16:06 7.2M chr8_chainMm9.sql 2007-10-04 16:06 1.6K chr7_chainMm9Link.txt.gz 2007-10-04 16:06 27M chr7_chainMm9Link.sql 2007-10-04 16:06 1.4K chr7_chainMm9.txt.gz 2007-10-04 16:06 4.8M chr7_chainMm9.sql 2007-10-04 16:05 1.6K chr6_chainMm9Link.txt.gz 2007-10-04 16:05 25M chr6_chainMm9Link.sql 2007-10-04 16:05 1.4K chr6_chainMm9.txt.gz 2007-10-04 16:05 3.6M chr6_chainMm9.sql 2007-10-04 16:05 1.6K chr5_chainMm9Link.txt.gz 2007-10-04 16:04 110M chr5_chainMm9Link.sql 2007-10-04 16:03 1.4K chr5_chainMm9.txt.gz 2007-10-04 16:03 12M chr5_chainMm9.sql 2007-10-04 16:02 1.6K chr4_chainMm9Link.txt.gz 2007-10-04 15:59 228M chr4_chainMm9Link.sql 2007-10-04 15:56 1.4K chr4_chainMm9.txt.gz 2007-10-04 15:56 47M chr4_chainMm9.sql 2007-10-04 15:55 1.6K chr3_chainMm9Link.txt.gz 2007-10-04 15:53 203M chr3_chainMm9Link.sql 2007-10-04 15:51 1.4K chr3_chainMm9.txt.gz 2007-10-04 15:50 44M chr3_chainMm9.sql 2007-10-04 15:50 1.6K chr2_chainMm9Link.txt.gz 2007-10-04 15:49 97M chr2_chainMm9Link.sql 2007-10-04 15:47 1.4K chr2_chainMm9.txt.gz 2007-10-04 15:47 16M chr2_chainMm9.sql 2007-10-04 15:47 1.6K chr1_chainMm9Link.txt.gz 2007-10-04 15:45 151M chr1_chainMm9Link.sql 2007-10-04 15:44 1.4K chr1_chainMm9.txt.gz 2007-10-04 15:44 26M chr1_chainMm9.sql 2007-10-04 15:43 1.6K netOrnAna1.txt.gz 2007-06-01 13:14 27M netOrnAna1.sql 2007-06-01 13:13 2.2K chrX_chainOrnAna1Link.txt.gz 2007-06-01 13:13 7.3M chrX_chainOrnAna1Link.sql 2007-06-01 13:13 1.4K chrX_chainOrnAna1.txt.gz 2007-06-01 13:13 1.7M chrX_chainOrnAna1.sql 2007-06-01 13:13 1.7K chrUn_chainOrnAna1Link.txt.gz 2007-06-01 13:12 70M chrUn_chainOrnAna1Link.sql 2007-06-01 13:11 1.4K chrUn_chainOrnAna1.txt.gz 2007-06-01 13:11 19M chrUn_chainOrnAna1.sql 2007-06-01 13:11 1.7K chr8_chainOrnAna1Link.txt.gz 2007-06-01 13:10 49M chr8_chainOrnAna1Link.sql 2007-06-01 13:10 1.4K chr8_chainOrnAna1.txt.gz 2007-06-01 13:10 9.7M chr8_chainOrnAna1.sql 2007-06-01 13:09 1.7K chr7_chainOrnAna1Link.txt.gz 2007-06-01 13:09 34M chr7_chainOrnAna1Link.sql 2007-06-01 13:09 1.4K chr7_chainOrnAna1.txt.gz 2007-06-01 13:09 6.8M chr7_chainOrnAna1.sql 2007-06-01 13:09 1.7K chr6_chainOrnAna1Link.txt.gz 2007-06-01 13:08 43M chr6_chainOrnAna1Link.sql 2007-06-01 13:08 1.4K chr6_chainOrnAna1.txt.gz 2007-06-01 13:08 8.1M chr6_chainOrnAna1.sql 2007-06-01 13:07 1.7K chr5_chainOrnAna1Link.txt.gz 2007-06-01 13:07 66M chr5_chainOrnAna1Link.sql 2007-06-01 13:06 1.4K chr5_chainOrnAna1.txt.gz 2007-06-01 13:06 13M chr5_chainOrnAna1.sql 2007-06-01 13:05 1.7K 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