This directory contains a dump of the UCSC genome annotation database for the Jan. 2006 assembly of the opossum genome (UCSC version monDom4) from the Broad Institute at MIT and Harvard. The directory is updated nightly. The .txt.gz files contain the database tables in a tab-delimited format compressed with gzip. The .sql files contain the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom4 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/monDom4/database. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ----------------------------------------------------------- All the tables in this directory are freely usable for any purpose. The opossum sequence is made freely available before scientific publication with the following understanding: 1. The data may be freely downloaded, used in analyses, and repackaged in databases. 2. Users are free to use the data in scientific papers analyzing particular genes and regions if the providers of these data (The Broad Institute) are properly acknowledged. 3. The centers producing the data reserve the right to publish the initial large-scale analyses of the data set, including large-scale identification of regions of evolutionary conservation and large-scale genomic assembly. Large-scale refers to regions with size on the order of a chromosome (that is, 30 Mb or more). 4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory - blastHg18KG.sql 2006-08-08 12:23 2.1K blastHg18KG.txt.gz 2006-08-08 12:23 3.6M chr1_chainDanRer4.sql 2006-08-08 12:23 1.6K chr1_chainDanRer4.txt.gz 2006-08-08 12:23 3.0M chr1_chainDanRer4Link.sql 2006-08-08 12:23 1.4K chr1_chainDanRer4Link.txt.gz 2006-08-08 12:23 16M chr1_chainGalGal3.sql 2006-08-08 12:23 1.6K chr1_chainGalGal3.txt.gz 2006-08-08 12:23 4.6M chr1_chainGalGal3Link.sql 2006-08-08 12:23 1.4K chr1_chainGalGal3Link.txt.gz 2006-08-08 12:24 21M chr1_chainHg18.sql 2006-08-08 12:24 1.6K chr1_chainHg18.txt.gz 2006-08-08 12:24 37M chr1_chainHg18Link.sql 2006-08-08 12:25 1.4K chr1_chainHg18Link.txt.gz 2006-08-08 12:27 149M chr1_chainPanTro2.sql 2006-08-08 12:31 1.6K chr1_chainPanTro2.txt.gz 2006-08-08 12:32 40M chr1_chainPanTro2Link.sql 2006-08-08 12:32 1.4K chr1_chainPanTro2Link.txt.gz 2006-08-08 12:35 152M chr1_chainRn4.sql 2006-08-08 12:37 1.6K chr1_chainRn4.txt.gz 2006-08-08 12:37 7.4M chr1_chainRn4Link.sql 2006-08-08 12:37 1.4K chr1_chainRn4Link.txt.gz 2006-08-08 12:38 63M chr1_chainXenTro2.sql 2006-08-08 12:39 1.6K chr1_chainXenTro2.txt.gz 2006-08-08 12:39 29M chr1_chainXenTro2Link.sql 2006-08-08 12:40 1.4K chr1_chainXenTro2Link.txt.gz 2006-08-08 12:41 107M chr1_rmsk.sql 2006-08-08 12:42 1.8K chr1_rmsk.txt.gz 2006-08-08 12:43 40M chr2_chainDanRer4.sql 2006-08-08 12:43 1.6K chr2_chainDanRer4.txt.gz 2006-08-08 12:43 1.9M chr2_chainDanRer4Link.sql 2006-08-08 12:43 1.4K chr2_chainDanRer4Link.txt.gz 2006-08-08 12:43 9.9M chr2_chainGalGal3.sql 2006-08-08 12:44 1.6K chr2_chainGalGal3.txt.gz 2006-08-08 12:44 2.9M chr2_chainGalGal3Link.sql 2006-08-08 12:44 1.4K chr2_chainGalGal3Link.txt.gz 2006-08-08 12:44 13M chr2_chainHg18.sql 2006-08-08 12:44 1.6K chr2_chainHg18.txt.gz 2006-08-08 12:44 23M chr2_chainHg18Link.sql 2006-08-08 12:44 1.4K chr2_chainHg18Link.txt.gz 2006-08-08 12:46 99M chr2_chainPanTro2.sql 2006-08-08 12:49 1.6K chr2_chainPanTro2.txt.gz 2006-08-08 12:49 24M chr2_chainPanTro2Link.sql 2006-08-08 12:49 1.4K chr2_chainPanTro2Link.txt.gz 2006-08-08 12:50 96M chr2_chainRn4.sql 2006-08-08 12:52 1.6K chr2_chainRn4.txt.gz 2006-08-08 12:52 4.8M chr2_chainRn4Link.sql 2006-08-08 12:52 1.4K chr2_chainRn4Link.txt.gz 2006-08-08 12:52 43M chr2_chainXenTro2.sql 2006-08-08 12:53 1.6K chr2_chainXenTro2.txt.gz 2006-08-08 12:53 19M chr2_chainXenTro2Link.sql 2006-08-08 12:53 1.4K chr2_chainXenTro2Link.txt.gz 2006-08-08 12:54 65M ensGene.sql 2006-08-08 12:55 1.5K ensGene.txt.gz 2006-08-08 12:55 2.0M chr2_rmsk.sql 2006-08-08 12:55 1.8K chr2_rmsk.txt.gz 2006-08-08 12:55 28M chr3_chainDanRer4.sql 2006-08-08 12:56 1.6K chr3_chainDanRer4.txt.gz 2006-08-08 12:56 3.5M chr3_chainDanRer4Link.sql 2006-08-08 12:56 1.4K chr3_chainDanRer4Link.txt.gz 2006-08-08 12:56 15M chr3_chainGalGal3.sql 2006-08-08 12:56 1.6K chr3_chainGalGal3.txt.gz 2006-08-08 12:56 7.6M gap.sql 2006-08-08 12:56 1.5K gap.txt.gz 2006-08-08 12:56 1.0M chr3_chainGalGal3Link.sql 2006-08-08 12:56 1.4K chr3_chainGalGal3Link.txt.gz 2006-08-08 12:57 24M chr3_chainHg18.sql 2006-08-08 12:57 1.6K chr3_chainHg18.txt.gz 2006-08-08 12:58 63M chr3_chainHg18Link.sql 2006-08-08 12:59 1.4K chr3_chainHg18Link.txt.gz 2006-08-08 13:02 203M chr3_chainPanTro2.sql 2006-08-08 13:08 1.6K chr3_chainPanTro2.txt.gz 2006-08-08 13:09 77M chr3_chainPanTro2Link.sql 2006-08-08 13:09 1.4K chr3_chainPanTro2Link.txt.gz 2006-08-08 13:12 230M chr3_chainRn4.sql 2006-08-08 13:16 1.6K chr3_chainRn4.txt.gz 2006-08-08 13:16 6.7M chr3_chainRn4Link.sql 2006-08-08 13:16 1.4K chr3_chainRn4Link.txt.gz 2006-08-08 13:17 42M chr3_chainXenTro2.sql 2006-08-08 13:18 1.6K chr3_chainXenTro2.txt.gz 2006-08-08 13:18 56M chr3_chainXenTro2Link.sql 2006-08-08 13:19 1.4K chr3_chainXenTro2Link.txt.gz 2006-08-08 13:22 173M chr3_rmsk.sql 2006-08-08 13:24 1.8K chr3_rmsk.txt.gz 2006-08-08 13:25 27M chr4_chainDanRer4.sql 2006-08-08 13:25 1.6K chr4_chainDanRer4.txt.gz 2006-08-08 13:25 3.4M chr4_chainDanRer4Link.sql 2006-08-08 13:25 1.4K chr4_chainDanRer4Link.txt.gz 2006-08-08 13:25 15M chr4_chainGalGal3.sql 2006-08-08 13:25 1.6K chr4_chainGalGal3.txt.gz 2006-08-08 13:25 8.1M chr4_chainGalGal3Link.sql 2006-08-08 13:26 1.4K chr4_chainGalGal3Link.txt.gz 2006-08-08 13:26 26M chr4_chainHg18.sql 2006-08-08 13:26 1.6K chr4_chainHg18.txt.gz 2006-08-08 13:27 64M chr4_chainHg18Link.sql 2006-08-08 13:28 1.4K chr4_chainHg18Link.txt.gz 2006-08-08 13:31 214M chr4_chainRn4Link.sql 2006-08-08 13:35 1.4K chr4_chainRn4Link.txt.gz 2006-08-08 13:36 60M chr4_chainPanTro2.sql 2006-08-08 13:41 1.6K chr4_chainPanTro2.txt.gz 2006-08-08 13:42 77M chr4_chainPanTro2Link.sql 2006-08-08 13:43 1.4K chr4_chainPanTro2Link.txt.gz 2006-08-08 13:46 244M chr4_chainRn4.sql 2006-08-08 13:49 1.6K chr4_chainRn4.txt.gz 2006-08-08 13:49 8.5M chr4_chainXenTro2.sql 2006-08-08 13:49 1.6K chr4_chainXenTro2.txt.gz 2006-08-08 13:50 56M chr4_chainXenTro2Link.sql 2006-08-08 13:51 1.4K chr4_chainXenTro2Link.txt.gz 2006-08-08 13:54 182M chr4_rmsk.sql 2006-08-08 13:56 1.8K chr4_rmsk.txt.gz 2006-08-08 13:57 22M chr5_chainDanRer4.sql 2006-08-08 13:57 1.6K chr5_chainDanRer4.txt.gz 2006-08-08 13:57 904K chr5_chainDanRer4Link.sql 2006-08-08 13:57 1.4K chr5_chainDanRer4Link.txt.gz 2006-08-08 13:57 6.3M chr5_chainGalGal3.sql 2006-08-08 13:57 1.6K chr5_chainGalGal3.txt.gz 2006-08-08 13:57 2.1M chr5_chainGalGal3Link.sql 2006-08-08 13:57 1.4K chr5_chainGalGal3Link.txt.gz 2006-08-08 13:57 15M chr5_chainHg18.sql 2006-08-08 13:57 1.6K chr5_chainHg18.txt.gz 2006-08-08 13:58 9.1M chr5_chainHg18Link.sql 2006-08-08 13:58 1.4K chr5_chainHg18Link.txt.gz 2006-08-08 13:58 55M chr5_chainPanTro2.sql 2006-08-08 14:01 1.6K chr5_chainPanTro2.txt.gz 2006-08-08 14:01 8.6M chr5_chainPanTro2Link.sql 2006-08-08 14:01 1.4K chr5_chainPanTro2Link.txt.gz 2006-08-08 14:02 60M chr5_chainRn4.sql 2006-08-08 14:02 1.6K chr5_chainRn4.txt.gz 2006-08-08 14:03 6.0M chr5_chainRn4Link.sql 2006-08-08 14:03 1.4K chr5_chainRn4Link.txt.gz 2006-08-08 14:04 64M chr5_chainXenTro2.sql 2006-08-08 14:04 1.6K chr5_chainXenTro2.txt.gz 2006-08-08 14:04 8.5M chr5_chainXenTro2Link.sql 2006-08-08 14:05 1.4K chr5_chainXenTro2Link.txt.gz 2006-08-08 14:05 71M chr6_chainPanTro2.sql 2006-08-08 14:06 1.6K chr6_chainPanTro2.txt.gz 2006-08-08 14:06 5.8M chr5_rmsk.sql 2006-08-08 14:06 1.8K chr5_rmsk.txt.gz 2006-08-08 14:06 15M chr6_chainDanRer4.sql 2006-08-08 14:07 1.6K chr6_chainDanRer4.txt.gz 2006-08-08 14:07 647K chr6_chainDanRer4Link.sql 2006-08-08 14:07 1.4K chr6_chainDanRer4Link.txt.gz 2006-08-08 14:07 3.3M chr6_chainGalGal3.sql 2006-08-08 14:07 1.6K chr6_chainGalGal3.txt.gz 2006-08-08 14:07 933K chr6_chainGalGal3Link.sql 2006-08-08 14:07 1.4K chr6_chainGalGal3Link.txt.gz 2006-08-08 14:07 4.4M chr6_chainHg18.sql 2006-08-08 14:07 1.6K chr6_chainHg18.txt.gz 2006-08-08 14:07 7.9M chr6_chainHg18Link.sql 2006-08-08 14:07 1.4K chr6_chainHg18Link.txt.gz 2006-08-08 14:07 34M chr6_chainPanTro2Link.sql 2006-08-08 14:08 1.4K chr6_chainPanTro2Link.txt.gz 2006-08-08 14:09 26M chr6_chainRn4.sql 2006-08-08 14:09 1.6K chr6_chainRn4.txt.gz 2006-08-08 14:09 1.7M chr6_chainRn4Link.sql 2006-08-08 14:09 1.4K chr6_chainRn4Link.txt.gz 2006-08-08 14:09 16M chr6_chainXenTro2.sql 2006-08-08 14:10 1.6K chr6_chainXenTro2.txt.gz 2006-08-08 14:10 4.8M chr6_chainXenTro2Link.sql 2006-08-08 14:10 1.4K chr6_chainXenTro2Link.txt.gz 2006-08-08 14:10 19M chr6_rmsk.sql 2006-08-08 14:10 1.8K chr6_rmsk.txt.gz 2006-08-08 14:10 13M chr7_chainDanRer4.sql 2006-08-08 14:11 1.6K chr7_chainDanRer4.txt.gz 2006-08-08 14:11 678K chr7_chainDanRer4Link.sql 2006-08-08 14:11 1.4K chr7_chainDanRer4Link.txt.gz 2006-08-08 14:11 3.4M chr7_chainGalGal3.sql 2006-08-08 14:11 1.6K chr7_chainGalGal3.txt.gz 2006-08-08 14:11 830K chr7_chainGalGal3Link.sql 2006-08-08 14:11 1.4K chr7_chainGalGal3Link.txt.gz 2006-08-08 14:11 4.0M chr7_chainHg18.sql 2006-08-08 14:11 1.6K chr7_chainHg18.txt.gz 2006-08-08 14:11 12M chr7_chainHg18Link.sql 2006-08-08 14:11 1.4K chr7_chainHg18Link.txt.gz 2006-08-08 14:12 44M chr7_chainPanTro2.sql 2006-08-08 14:13 1.6K chr7_chainPanTro2.txt.gz 2006-08-08 14:13 8.2M chr7_chainPanTro2Link.sql 2006-08-08 14:13 1.4K chr7_chainPanTro2Link.txt.gz 2006-08-08 14:13 33M chr7_chainRn4.sql 2006-08-08 14:14 1.6K chr7_chainRn4.txt.gz 2006-08-08 14:14 1.2M chr7_chainRn4Link.sql 2006-08-08 14:14 1.4K chr7_chainRn4Link.txt.gz 2006-08-08 14:14 11M chr7_chainXenTro2.sql 2006-08-08 14:14 1.6K chr7_chainXenTro2.txt.gz 2006-08-08 14:14 5.8M chr7_chainXenTro2Link.sql 2006-08-08 14:14 1.4K chr7_chainXenTro2Link.txt.gz 2006-08-08 14:14 19M chr7_rmsk.sql 2006-08-08 14:14 1.8K chr7_rmsk.txt.gz 2006-08-08 14:15 13M chr8_chainDanRer4.sql 2006-08-08 14:15 1.6K chr8_chainDanRer4.txt.gz 2006-08-08 14:15 1.0M chr8_chainDanRer4Link.sql 2006-08-08 14:15 1.4K chr8_chainDanRer4Link.txt.gz 2006-08-08 14:15 5.0M chr8_chainGalGal3.sql 2006-08-08 14:15 1.6K chr8_chainGalGal3.txt.gz 2006-08-08 14:15 1.5M chr8_chainGalGal3Link.sql 2006-08-08 14:15 1.4K chr8_chainGalGal3Link.txt.gz 2006-08-08 14:15 7.3M chr8_chainHg18.sql 2006-08-08 14:15 1.6K chr8_chainHg18.txt.gz 2006-08-08 14:15 11M chr8_chainHg18Link.sql 2006-08-08 14:15 1.4K chr8_chainHg18Link.txt.gz 2006-08-08 14:16 50M ensGtp.sql 2006-08-08 14:17 1.2K ensGtp.txt.gz 2006-08-08 14:17 287K chr8_chainPanTro2.sql 2006-08-08 14:17 1.6K chr8_chainPanTro2.txt.gz 2006-08-08 14:18 10M chr8_chainPanTro2Link.sql 2006-08-08 14:18 1.4K chr8_chainPanTro2Link.txt.gz 2006-08-08 14:18 46M chr8_chainRn4.sql 2006-08-08 14:19 1.6K chr8_chainRn4.txt.gz 2006-08-08 14:19 2.4M chr8_chainRn4Link.sql 2006-08-08 14:19 1.4K chr8_chainRn4Link.txt.gz 2006-08-08 14:19 24M chr8_chainXenTro2.sql 2006-08-08 14:19 1.6K chr8_chainXenTro2.txt.gz 2006-08-08 14:19 8.7M chr8_chainXenTro2Link.sql 2006-08-08 14:20 1.4K chr8_chainXenTro2Link.txt.gz 2006-08-08 14:20 31M chr8_rmsk.sql 2006-08-08 14:20 1.8K chr8_rmsk.txt.gz 2006-08-08 14:20 16M chrUn_chainDanRer4.sql 2006-08-08 14:21 1.6K chrUn_chainDanRer4.txt.gz 2006-08-08 14:21 1.9M chrUn_chainDanRer4Link.sql 2006-08-08 14:21 1.4K chrUn_chainDanRer4Link.txt.gz 2006-08-08 14:21 8.9M chrUn_chainGalGal3.sql 2006-08-08 14:21 1.6K chrUn_chainGalGal3.txt.gz 2006-08-08 14:21 4.9M chrUn_chainGalGal3Link.sql 2006-08-08 14:21 1.4K chrUn_chainGalGal3Link.txt.gz 2006-08-08 14:21 16M chrUn_chainHg18.sql 2006-08-08 14:22 1.6K chrUn_chainHg18.txt.gz 2006-08-08 14:22 38M chrUn_chainHg18Link.sql 2006-08-08 14:23 1.4K chrUn_chainHg18Link.txt.gz 2006-08-08 14:24 130M chrUn_chainPanTro2.sql 2006-08-08 14:27 1.6K chrUn_chainPanTro2.txt.gz 2006-08-08 14:28 45M chrUn_chainPanTro2Link.sql 2006-08-08 14:29 1.4K chrUn_chainPanTro2Link.txt.gz 2006-08-08 14:31 146M chrUn_chainRn4.sql 2006-08-08 14:33 1.6K chrUn_chainRn4.txt.gz 2006-08-08 14:33 5.1M chrUn_chainRn4Link.sql 2006-08-08 14:33 1.4K chrUn_chainRn4Link.txt.gz 2006-08-08 14:33 33M chrUn_chainXenTro2.sql 2006-08-08 14:34 1.6K chrUn_chainXenTro2.txt.gz 2006-08-08 14:34 33M chrUn_chainXenTro2Link.sql 2006-08-08 14:35 1.4K chrUn_chainXenTro2Link.txt.gz 2006-08-08 14:36 98M chrUn_rmsk.sql 2006-08-08 14:37 1.8K chrUn_rmsk.txt.gz 2006-08-08 14:37 7.8M chrX_chainDanRer4.sql 2006-08-08 14:37 1.6K chrX_chainDanRer4.txt.gz 2006-08-08 14:37 203K chrX_chainDanRer4Link.sql 2006-08-08 14:37 1.4K chrX_chainDanRer4Link.txt.gz 2006-08-08 14:37 959K ensPep.sql 2006-08-08 14:37 1.1K ensPep.txt.gz 2006-08-08 14:37 6.2M chrX_chainGalGal3.sql 2006-08-08 14:37 1.6K chrX_chainGalGal3.txt.gz 2006-08-08 14:37 422K chrX_chainGalGal3Link.sql 2006-08-08 14:37 1.4K chrX_chainGalGal3Link.txt.gz 2006-08-08 14:37 1.5M chrX_chainHg18.sql 2006-08-08 14:37 1.6K chrX_chainHg18.txt.gz 2006-08-08 14:37 4.3M chrX_chainHg18Link.sql 2006-08-08 14:37 1.4K chrX_chainHg18Link.txt.gz 2006-08-08 14:38 15M chrX_chainPanTro2.sql 2006-08-08 14:38 1.6K chrX_chainPanTro2.txt.gz 2006-08-08 14:38 4.1M chrX_chainPanTro2Link.sql 2006-08-08 14:38 1.4K chrX_chainPanTro2Link.txt.gz 2006-08-08 14:38 14M chrX_chainRn4.sql 2006-08-08 14:38 1.6K chrX_chainRn4.txt.gz 2006-08-08 14:38 708K chrX_chainRn4Link.sql 2006-08-08 14:38 1.4K chrX_chainRn4Link.txt.gz 2006-08-08 14:38 4.5M chrX_chainXenTro2.sql 2006-08-08 14:38 1.6K chrX_chainXenTro2.txt.gz 2006-08-08 14:38 2.6M chrX_chainXenTro2Link.sql 2006-08-08 14:38 1.4K chrX_chainXenTro2Link.txt.gz 2006-08-08 14:39 8.5M chrX_rmsk.sql 2006-08-08 14:39 1.8K chrX_rmsk.txt.gz 2006-08-08 14:39 2.7M chromInfo.sql 2006-08-08 14:39 1.2K chromInfo.txt.gz 2006-08-08 14:39 158 cpgIslandExt.sql 2006-08-08 14:39 1.6K cpgIslandExt.txt.gz 2006-08-08 14:39 452K extFile.sql 2006-08-08 14:39 1.2K extFile.txt.gz 2006-08-08 14:39 230 gc5Base.sql 2006-08-08 14:40 1.7K gc5Base.txt.gz 2006-08-08 14:40 14M genscan.sql 2006-08-08 14:41 1.6K genscan.txt.gz 2006-08-08 14:41 2.4M genscanPep.sql 2006-08-08 14:41 1.1K genscanPep.txt.gz 2006-08-08 14:41 8.3M gold.sql 2006-08-08 14:41 1.6K gold.txt.gz 2006-08-08 14:41 1.3M multiz7way.sql 2006-08-08 14:41 1.4K multiz7way.txt.gz 2006-08-08 14:42 37M multiz7wayFrames.sql 2006-08-08 14:42 1.5K multiz7wayFrames.txt.gz 2006-08-08 14:42 9.2M multiz7waySummary.sql 2006-08-08 14:43 1.4K multiz7waySummary.txt.gz 2006-08-08 14:43 16M netDanRer4.sql 2006-08-08 14:43 2.2K netDanRer4.txt.gz 2006-08-08 14:43 7.6M netGalGal3.sql 2006-08-08 14:43 2.2K netGalGal3.txt.gz 2006-08-08 14:43 9.5M netHg18.sql 2006-08-08 14:43 2.2K netHg18.txt.gz 2006-08-08 14:44 27M netPanTro2.sql 2006-08-08 14:45 2.2K netPanTro2.txt.gz 2006-08-08 14:46 27M netRn4.sql 2006-08-08 14:46 2.2K netRn4.txt.gz 2006-08-08 14:46 17M netXenTro2.sql 2006-08-08 14:47 2.2K netXenTro2.txt.gz 2006-08-08 14:47 7.8M phastCons7.sql 2006-08-08 14:47 1.7K phastCons7.txt.gz 2006-08-08 14:48 24M phastConsElements7way.sql 2006-08-08 14:48 1.4K phastConsElements7way.txt.gz 2006-08-08 14:48 18M quality.sql 2006-08-08 14:48 1.7K quality.txt.gz 2006-08-08 14:51 64M simpleRepeat.sql 2006-08-08 14:52 1.9K simpleRepeat.txt.gz 2006-08-08 14:52 16M nscanGene.sql 2006-09-28 08:10 2.0K nscanGene.txt.gz 2006-09-28 08:10 2.0M nscanPep.sql 2006-09-28 08:10 1.1K nscanPep.txt.gz 2006-09-28 08:10 5.8M chr1_chainOrnAna1.sql 2007-06-01 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