This directory contains a dump of the UCSC genome annotation 
database for the Oct. 2004 assembly of the opossum genome (UCSC
version monDom1) from the Broad Institute at MIT and Harvard.

The directory is updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=monDom1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/monDom1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose. The opossum sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data (The
   Broad Institute) are properly acknowledged. 
3. The centers producing the data reserve the right to publish the 
   initial large-scale analyses of the data set, including large-scale 
   identification of regions of evolutionary conservation and large-scale 
   genomic assembly.  Large-scale refers to regions with size on the order 
   of a chromosome (that is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                        Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2024-04-21 03:24 33 extFile.txt.gz 2005-01-15 05:57 182 grp.txt.gz 2014-03-02 04:14 223 genscanPep.sql 2013-10-01 12:48 330 contigAcc.sql 2013-10-01 12:48 343 chromInfo.sql 2013-10-01 12:48 396 extFile.sql 2013-10-01 12:48 445 history.txt.gz 2005-01-15 05:59 508 history.sql 2013-10-01 12:48 537 chainMm6Link.sql 2013-10-01 12:48 577 chainHg17Link.sql 2013-10-01 12:48 579 chainDanRer2Link.sql 2013-10-01 12:48 585 chainGalGal2Link.sql 2013-10-01 12:48 585 mostConserved.sql 2013-10-01 12:48 650 multiz5way.sql 2013-10-01 12:48 661 mm5_netBlastz.sql 2013-10-01 12:48 667 hg17_netBlastz.sql 2013-10-01 12:48 669 danRer2_netBlastz.sql 2013-10-01 12:48 675 galGal2_netBlastz.sql 2013-10-01 12:48 675 hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 693 gap.sql 2013-10-01 12:48 722 hgFindSpec.txt.gz 2023-03-28 13:51 732 genscan.sql 2013-10-01 12:48 748 cpgIslandExt.sql 2013-10-01 12:48 751 gold.sql 2013-10-01 12:48 799 chainMm6.sql 2013-10-01 12:48 878 chainHg17.sql 2013-10-01 12:48 880 chainDanRer2.sql 2013-10-01 12:48 886 chainGalGal2.sql 2013-10-01 12:48 886 gc5Base.sql 2013-10-01 12:48 890 quality.sql 2013-10-01 12:48 890 phastCons5.sql 2013-10-01 12:48 898 rmsk.sql 2013-10-01 12:48 1.1K simpleRepeat.sql 2013-10-01 12:48 1.1K gbDelete_tmp.sql 2009-08-19 15:43 1.3K microsat.sql 2006-08-03 07:52 1.3K netMm6.sql 2013-10-01 12:48 1.3K netHg17.sql 2013-10-01 12:48 1.3K netDanRer2.sql 2013-10-01 12:48 1.3K netGalGal2.sql 2013-10-01 12:48 1.3K blastHg17KG.sql 2013-10-01 12:48 1.3K grp.sql 2014-03-02 04:14 1.4K bigFiles.sql 2024-04-21 03:24 1.4K tableDescriptions.sql 2024-04-20 02:03 1.4K tableList.sql 2024-04-21 03:24 1.6K gbLoaded.sql 2020-08-22 12:20 1.6K cpgIslandExtUnmasked.sql 2014-06-01 16:52 1.7K xenoRefFlat.sql 2020-08-22 12:05 1.7K hgFindSpec.sql 2023-03-28 13:51 1.8K mrnaOrientInfo.sql 2019-03-17 11:24 1.8K hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K augustusGene.sql 2015-07-26 16:38 1.9K xenoRefGene.sql 2020-08-22 12:05 2.0K trackDb.sql 2023-03-28 13:51 2.1K trackDb_pushedout.sql 2021-12-27 12:21 2.1K all_mrna.sql 2019-03-17 11:24 2.1K xenoRefSeqAli.sql 2020-08-22 12:05 2.1K xenoMrna.sql 2016-02-21 20:04 2.4K tableList.txt.gz 2024-04-21 03:24 3.1K tableDescriptions.txt.gz 2024-04-20 02:03 5.5K mrnaOrientInfo.txt.gz 2019-03-17 11:24 14K gbLoaded.txt.gz 2020-08-22 12:20 15K trackDb_pushedout.txt.gz 2021-12-27 12:21 25K trackDb.txt.gz 2023-03-28 13:51 25K all_mrna.txt.gz 2019-03-17 11:24 65K chromInfo.txt.gz 2005-01-15 05:57 105K gbDelete_tmp.txt.gz 2009-08-19 15:43 171K cpgIslandExt.txt.gz 2005-01-15 05:57 545K contigAcc.txt.gz 2005-03-24 05:08 546K cpgIslandExtUnmasked.txt.gz 2014-06-01 16:52 594K microsat.txt.gz 2006-08-03 07:52 1.0M gap.txt.gz 2005-01-15 05:57 1.1M gold.txt.gz 2005-01-15 05:59 1.8M augustusGene.txt.gz 2015-07-26 16:38 2.0M danRer2_netBlastz.txt.gz 2005-01-20 04:51 2.2M genscan.txt.gz 2005-01-15 05:58 2.4M galGal2_netBlastz.txt.gz 2005-01-20 04:51 4.2M blastHg17KG.txt.gz 2005-01-15 05:36 4.3M chainDanRer2.txt.gz 2005-01-15 05:36 4.7M netDanRer2.txt.gz 2005-01-15 06:00 6.0M mm5_netBlastz.txt.gz 2005-01-20 04:52 7.3M chainGalGal2.txt.gz 2005-01-15 05:37 8.7M genscanPep.txt.gz 2005-01-15 05:58 8.8M netGalGal2.txt.gz 2005-01-15 06:00 9.4M hg17_netBlastz.txt.gz 2005-01-20 04:52 11M gc5Base.txt.gz 2005-01-15 05:58 14M multiz5way.txt.gz 2005-01-15 05:59 15M simpleRepeat.txt.gz 2005-01-15 06:14 16M mostConserved.txt.gz 2005-01-15 05:59 19M netMm6.txt.gz 2005-05-05 06:48 22M phastCons5.txt.gz 2005-01-20 04:50 30M xenoRefFlat.txt.gz 2020-08-22 12:05 31M xenoRefSeqAli.txt.gz 2020-08-22 12:05 32M xenoRefGene.txt.gz 2020-08-22 12:05 34M chainMm6.txt.gz 2005-05-05 06:37 34M netHg17.txt.gz 2005-01-15 06:01 35M chainHg17.txt.gz 2005-01-15 05:39 40M chainDanRer2Link.txt.gz 2005-01-15 05:37 46M chainGalGal2Link.txt.gz 2005-01-15 05:38 67M quality.txt.gz 2005-01-15 06:04 67M xenoMrna.txt.gz 2016-02-21 20:04 290M chainMm6Link.txt.gz 2005-05-05 06:43 369M rmsk.txt.gz 2005-01-15 06:10 446M chainHg17Link.txt.gz 2005-01-15 05:44 476M