This directory contains the Build 34 assembly of the mouse genome
(mm6, March 2005) from the Mouse Genome Sequencing Consortium. This
assembly was produced at NCBI.
Files included in this directory:
chr*.fa.gz: gzip compressed FASTA sequence of each chromosome.
Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
RepeatMasker January 12 2005 version with RepBase
libraries: RepBase Update 9.11, RM database version 20050112
md5sum.txt - MD5 checksum of these files to verify correct transmission
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm6/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
To unpack the fa.gz files:
gunzip <file>.fa.gz
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2005-04-15 22:20 1.9K
chrY_random.fa.gz 2005-03-14 12:24 8.1M
chrY.fa.gz 2005-03-14 12:22 618K
chrX.fa.gz 2005-03-14 12:22 49M
chrUn_random.fa.gz 2005-03-14 12:24 17M
chrM.fa.gz 2005-03-14 12:22 5.3K
chr19_random.fa.gz 2005-03-14 12:24 360K
chr19.fa.gz 2005-03-14 12:24 18M
chr18_random.fa.gz 2005-03-14 12:24 689K
chr18.fa.gz 2005-03-14 12:24 27M
chr17_random.fa.gz 2005-03-14 12:24 594K
chr17.fa.gz 2005-03-14 12:23 27M
chr16_random.fa.gz 2005-03-14 12:24 668K
chr16.fa.gz 2005-03-14 12:23 29M
chr15_random.fa.gz 2005-03-14 12:24 546K
chr15.fa.gz 2005-03-14 12:23 31M
chr14_random.fa.gz 2005-03-14 12:24 788K
chr14.fa.gz 2005-03-14 12:23 35M
chr13_random.fa.gz 2005-03-14 12:24 1.4M
chr13.fa.gz 2005-03-14 12:23 34M
chr12_random.fa.gz 2005-03-14 12:24 1.1M
chr12.fa.gz 2005-03-14 12:23 34M
chr11.fa.gz 2005-03-14 12:22 37M
chr10_random.fa.gz 2005-03-14 12:24 419K
chr10.fa.gz 2005-03-14 12:22 39M
chr9_random.fa.gz 2005-03-14 12:24 402K
chr9.fa.gz 2005-03-14 12:22 37M
chr8_random.fa.gz 2005-03-14 12:24 1.0M
chr8.fa.gz 2005-03-14 12:22 38M
chr7_random.fa.gz 2005-03-14 12:24 1.4M
chr7.fa.gz 2005-03-14 12:21 41M
chr6_random.fa.gz 2005-03-14 12:24 869K
chr6.fa.gz 2005-03-14 12:21 45M
chr5_random.fa.gz 2005-03-14 12:24 1.0M
chr5.fa.gz 2005-03-14 12:21 45M
chr4.fa.gz 2005-03-14 12:21 47M
chr3_random.fa.gz 2005-03-14 12:24 1.6M
chr3.fa.gz 2005-03-14 12:20 48M
chr2.fa.gz 2005-03-14 12:20 56M
chr1_random.fa.gz 2005-03-14 12:24 1.0M
chr1.fa.gz 2005-03-14 12:20 59M