This directory contains compressed multiple alignments of the
following assemblies to the mouse genome (mm5, May 2004):
- rat (rn3, Jun. 2003)
- human (hg17, May 2004)
- dog (canFam1, Jul. 2004)
- chicken (galGal2, Feb. 2004)
Files included in this directory:
- chr*.maf.gz files: each contain all the alignments to that
particular mouse chromosome.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm5/multiz5way. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the dog and chicken
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2004-08-03 12:32 2.1K
chrM.maf.gz 2004-08-03 12:23 29K
chrY_random.maf.gz 2004-08-03 12:27 164K
chr10_random.maf.gz 2004-08-03 11:33 267K
chr15_random.maf.gz 2004-08-03 11:48 358K
chr19_random.maf.gz 2004-08-03 11:56 371K
chr9_random.maf.gz 2004-08-03 12:23 382K
chr17_random.maf.gz 2004-08-03 11:52 654K
chr18_random.maf.gz 2004-08-03 11:54 699K
chr16_random.maf.gz 2004-08-03 11:50 774K
chr1_random.maf.gz 2004-08-03 11:56 803K
chr8_random.maf.gz 2004-08-03 12:21 808K
chr6_random.maf.gz 2004-08-03 12:15 858K
chr13_random.maf.gz 2004-08-03 11:42 1.0M
chr14_random.maf.gz 2004-08-03 11:45 1.1M
chr12_random.maf.gz 2004-08-03 11:39 1.2M
chr3_random.maf.gz 2004-08-03 12:04 1.4M
chr5_random.maf.gz 2004-08-03 12:11 1.4M
chr7_random.maf.gz 2004-08-03 12:18 3.7M
chrX_random.maf.gz 2004-08-03 12:27 4.1M
chr2_random.maf.gz 2004-08-03 12:01 5.3M
chr4_random.maf.gz 2004-08-03 12:08 5.3M
chrY.maf.gz 2004-08-03 12:27 14M
chrUn_random.maf.gz 2004-08-03 12:24 26M
chr19.maf.gz 2004-08-03 11:56 52M
chr17.maf.gz 2004-08-03 11:52 71M
chr18.maf.gz 2004-08-03 11:54 74M
chr16.maf.gz 2004-08-03 11:50 80M
chr15.maf.gz 2004-08-03 11:48 83M
chr13.maf.gz 2004-08-03 11:42 91M
chr12.maf.gz 2004-08-03 11:39 94M
chr14.maf.gz 2004-08-03 11:45 95M
chrX.maf.gz 2004-08-03 12:27 97M
chr7.maf.gz 2004-08-03 12:18 101M
chr8.maf.gz 2004-08-03 12:21 103M
chr9.maf.gz 2004-08-03 12:23 105M
chr10.maf.gz 2004-08-03 11:33 105M
chr11.maf.gz 2004-08-03 11:36 107M
chr5.maf.gz 2004-08-03 12:11 118M
chr6.maf.gz 2004-08-03 12:15 120M
chr3.maf.gz 2004-08-03 12:04 124M
chr4.maf.gz 2004-08-03 12:08 125M
chr1.maf.gz 2004-08-03 11:30 155M
chr2.maf.gz 2004-08-03 12:01 158M