This directory contains the Build 33 assembly of the mouse genome
(mm5, May 2004) from the Mouse Genome Sequencing Consortium. This
assembly was produced at NCBI.
Files included in this directory:
chr*.fa.zip: compressed FASTA sequence of each chromosome.
Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
RepeatMasker June 2003 version with RepBase libraries:
RepBase Update 8.4, RM database version 20030619
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm5/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
chr1.fa.zip 2004-07-14 20:16 58M
chr2.fa.zip 2004-07-14 20:18 56M
chrX.fa.zip 2004-07-14 20:33 48M
chr3.fa.zip 2004-07-14 20:20 48M
chr4.fa.zip 2004-07-14 20:22 47M
chr6.fa.zip 2004-07-14 20:26 44M
chr5.fa.zip 2004-07-14 20:24 44M
chr7.fa.zip 2004-07-14 20:28 39M
chr10.fa.zip 2004-07-14 20:35 39M
chr8.fa.zip 2004-07-14 20:29 38M
chr11.fa.zip 2004-07-14 20:37 37M
chr9.fa.zip 2004-07-14 20:31 37M
chr14.fa.zip 2004-07-14 20:41 35M
chr13.fa.zip 2004-07-14 20:40 34M
chr12.fa.zip 2004-07-14 20:38 34M
chr15.fa.zip 2004-07-14 20:43 31M
chr16.fa.zip 2004-07-14 20:44 29M
chr17.fa.zip 2004-07-14 20:45 27M
chr18.fa.zip 2004-07-14 20:46 27M
chrUn_random.fa.zip 2004-07-14 20:48 21M
chr19.fa.zip 2004-07-14 20:47 18M
chrY.fa.zip 2004-07-14 20:34 12M
chrX_random.fa.zip 2004-07-14 20:33 3.5M
chr4_random.fa.zip 2004-07-14 20:22 3.0M
chr2_random.fa.zip 2004-07-14 20:18 2.8M
chr7_random.fa.zip 2004-07-14 20:28 2.4M
chr5_random.fa.zip 2004-07-14 20:24 1.0M
chr3_random.fa.zip 2004-07-14 20:20 926K
chr14_random.fa.zip 2004-07-14 20:41 751K
chr6_random.fa.zip 2004-07-14 20:26 702K
chr1_random.fa.zip 2004-07-14 20:16 699K
chr12_random.fa.zip 2004-07-14 20:38 692K
chr13_random.fa.zip 2004-07-14 20:40 628K
chr18_random.fa.zip 2004-07-14 20:46 598K
chr8_random.fa.zip 2004-07-14 20:29 553K
chr16_random.fa.zip 2004-07-14 20:44 433K
chr17_random.fa.zip 2004-07-14 20:45 427K
chr9_random.fa.zip 2004-07-14 20:31 329K
chr15_random.fa.zip 2004-07-14 20:43 308K
chr10_random.fa.zip 2004-07-14 20:35 295K
chr19_random.fa.zip 2004-07-14 20:47 235K
chrY_random.fa.zip 2004-07-14 20:34 161K
chrM.fa.zip 2004-07-14 20:31 5.4K