This directory contains the Build 32 assembly of the mouse genome
(mm4, Oct. 2003) from the Mouse Genome Sequencing Consortium. This
assembly was produced at NCBI.
Files included in this directory:
- chr*.fa.zip: compressed FASTA sequence of each chromosome.
Repeats (from RepeatMasker and Tandem Repeat Finder)
are in lower case while non-repeating sequence is in upper case.
RepeatMasker June 2003 version with RepBase libraries:
RepBase Update 8.4, RM database version 20030619
-------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm4/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chr1.fa.zip 2003-11-04 14:21 60M
chr2.fa.zip 2003-11-04 14:22 55M
chr3.fa.zip 2003-11-04 14:22 49M
chrX.fa.zip 2003-11-04 14:22 47M
chr4.fa.zip 2003-11-04 14:22 46M
chr6.fa.zip 2003-11-04 14:22 45M
chr5.fa.zip 2003-11-04 14:22 43M
chr10.fa.zip 2003-11-04 14:21 40M
chr8.fa.zip 2003-11-04 14:22 39M
chr7.fa.zip 2003-11-04 14:22 39M
chr9.fa.zip 2003-11-04 14:22 38M
chr11.fa.zip 2003-11-04 14:21 37M
chr13.fa.zip 2003-11-04 14:21 35M
chr14.fa.zip 2003-11-04 14:21 35M
chr12.fa.zip 2003-11-04 14:21 35M
chr15.fa.zip 2003-11-04 14:21 30M
chr16.fa.zip 2003-11-04 14:21 30M
chr17.fa.zip 2003-11-04 14:21 28M
chr18.fa.zip 2003-11-04 14:21 26M
chrUn_random.fa.zip 2003-11-04 14:22 17M
chr19.fa.zip 2003-11-04 14:21 17M
chrY.fa.zip 2003-11-04 14:22 5.6M
chr7_random.fa.zip 2003-11-04 14:22 5.0M
chr5_random.fa.zip 2003-11-04 14:22 4.4M
chr15_random.fa.zip 2003-11-04 14:21 2.6M
chr18_random.fa.zip 2003-11-04 14:21 2.4M
chr12_random.fa.zip 2003-11-04 14:21 1.9M
chr19_random.fa.zip 2003-11-04 14:21 1.4M
chr2_random.fa.zip 2003-11-04 14:22 1.1M
chr4_random.fa.zip 2003-11-04 14:22 1.0M
chr13_random.fa.zip 2003-11-04 14:21 1.0M
chrX_random.fa.zip 2003-11-04 14:22 1.0M
chr3_random.fa.zip 2003-11-04 14:22 631K
chr14_random.fa.zip 2003-11-04 14:21 572K
chr8_random.fa.zip 2003-11-04 14:22 462K
chr10_random.fa.zip 2003-11-04 14:21 438K
chr17_random.fa.zip 2003-11-04 14:21 358K
chr6_random.fa.zip 2003-11-04 14:22 348K
chr1_random.fa.zip 2003-11-04 14:21 345K
chr11_random.fa.zip 2003-11-04 14:21 336K
chr9_random.fa.zip 2003-11-04 14:22 245K
chr16_random.fa.zip 2003-11-04 14:21 229K
chrY_random.fa.zip 2003-11-04 14:22 24K
chrM.fa.zip 2003-11-04 14:22 5.4K