This directory contains reciprocal-best netted chains for mm39-danRer11.

 - mm39.danRer11.rbest.net.gz: mm39-referenced recip.best net to danRer11.
 - mm39.danRer11.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm39 to danRer11 through the recip.best net.

 - danRer11.mm39.rbest.net.gz: danRer11-referenced recip.best net.
 - danRer11.mm39.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm39.danRer11.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                         Last modified      Size  Description
      Parent Directory                                  -   
      danRer11.mm39.rbest.net.gz   2020-11-25 01:01  3.8M  
      mm39.danRer11.rbest.net.gz   2020-11-25 01:01  3.7M  
      mm39.danRer11.rbest.chain.gz 2020-11-25 01:01  2.3M  
      danRer11.mm39.rbest.chain.gz 2020-11-25 01:01  2.3M  
      md5sum.txt                   2020-11-25 01:01  248   
      axtRBestNet/                 2021-03-15 15:09    -