This directory contains the Feb. 2002 freeze of the mouse
genome from the Mouse Genome Sequencing Consortium. This
assembly was produced at the Whitehead Institute using their
Arachne software.
chromAgp.zip - Description of how the working draft was generated from
fragments at a chromosome layout level.
chromFa.zip - The working draft sequence chromosome in one file per
chromosome. Repeats from RepeatMasker and Tandem Repeats Finder
(with period of 12 or less) are in lower case while non-repeating
sequence is in upper case.
chromFaMasked.zip - The working draft sequence chromosome in one file
per chromosome. Repeats are masked by capital N's and
non-repeating sequence is shown in upper case.
chromOut.zip - RepeatMasker .out file for chromosomes. These were done
with RepeatMasker at the -s sensitive setting.
contigAgp.zip - Description of how the working draft was generated from
fragments at a contig layout level.
contigFa.zip - The working draft sequence contig in one file per
contig. Repeats from RepeatMasker and Tandem Repeats Finder
(with period of 12 or less) are in lower case while non-repeating
sequence is in upper case.
contigFaMasked.zip - The working draft sequence contig in one file
per contig. Repeats are masked by capital N's and
non-repeating sequence is shown in upper case.
contigOut.zip - RepeatMasker .out file for contigs. These were done
with RepeatMasker at the -s sensitive setting.
Name Last modified Size Description
Parent Directory -
liftAll.zip 2002-10-15 16:01 3.7K
chromAgp.zip 2002-10-16 12:00 5.4M
contigAgp.zip 2002-10-16 13:24 5.5M
mrna.zip 2003-01-23 12:45 12M
contigOut.zip 2002-10-16 13:28 140M
chromOut.zip 2002-10-16 12:04 141M
chromFaMasked.zip 2002-10-16 13:23 475M
contigFaMasked.zip 2002-08-01 13:26 475M
database.zip 2002-10-06 06:55 653M
chromFa.zip 2002-10-16 12:52 765M
contigFa.zip 2002-10-16 14:17 780M