This directory contains reciprocal-best netted chains for mm10-criGriChoV1.

 - mm10.criGriChoV1.rbest.net.gz: mm10-referenced recip.best net to criGriChoV1.
 - mm10.criGriChoV1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to criGriChoV1 through the recip.best net.

 - criGriChoV1.mm10.rbest.net.gz: criGriChoV1-referenced recip.best net.
 - criGriChoV1.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm10.criGriChoV1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                            Last modified      Size  Description
      Parent Directory                                     -   
      mm10.criGriChoV1.rbest.net.gz   2017-04-14 07:09  140M  
      criGriChoV1.mm10.rbest.net.gz   2017-04-14 07:04  133M  
      mm10.criGriChoV1.rbest.chain.gz 2017-04-14 07:07   77M  
      criGriChoV1.mm10.rbest.chain.gz 2017-04-14 07:06   77M  
      md5sum.txt                      2017-04-14 07:09  260   
      axtRBestNet/                    2017-04-14 19:12    -