This directory contains reciprocal-best netted chains for manPen1-mm10.

 - manPen1.mm10.rbest.net.gz: manPen1-referenced recip.best net to mm10.
 - manPen1.mm10.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from manPen1 to mm10 through the recip.best net.

 - mm10.manPen1.rbest.net.gz: mm10-referenced recip.best net.
 - mm10.manPen1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/manPen1.mm10.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2017-04-20 16:34    -   
      md5sum.txt                  2017-03-16 08:03  244   
      manPen1.mm10.rbest.net.gz   2017-03-16 08:03  108M  
      manPen1.mm10.rbest.chain.gz 2017-03-16 08:01   54M  
      mm10.manPen1.rbest.chain.gz 2017-03-16 08:00   53M  
      mm10.manPen1.rbest.net.gz   2017-03-16 07:59   83M