This directory contains reciprocal-best netted chains for manPen1-hg38.

 - manPen1.hg38.rbest.net.gz: manPen1-referenced recip.best net to hg38.
 - manPen1.hg38.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from manPen1 to hg38 through the recip.best net.

 - hg38.manPen1.rbest.net.gz: hg38-referenced recip.best net.
 - hg38.manPen1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/manPen1.hg38.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      hg38.manPen1.rbest.net.gz   2017-03-16 08:01  144M  
      hg38.manPen1.rbest.chain.gz 2017-03-16 08:02   73M  
      manPen1.hg38.rbest.chain.gz 2017-03-16 08:04   73M  
      manPen1.hg38.rbest.net.gz   2017-03-16 08:05  111M  
      md5sum.txt                  2017-03-16 08:05  244   
      axtRBestNet/                2017-04-20 16:32    -