This directory contains reciprocal-best netted chains for hg38-ponAbe3.
- hg38.ponAbe3.rbest.net.gz: hg38-referenced recip.best net to ponAbe3.
- hg38.ponAbe3.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from hg38 to ponAbe3 through the recip.best net.
- ponAbe3.hg38.rbest.net.gz: ponAbe3-referenced recip.best net.
- ponAbe3.hg38.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/hg38.ponAbe3.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
hg38.ponAbe3.rbest.net.gz 2018-03-26 15:40 34M
ponAbe3.hg38.rbest.net.gz 2018-03-26 15:39 33M
ponAbe3.hg38.rbest.chain.gz 2018-03-26 15:39 20M
hg38.ponAbe3.rbest.chain.gz 2018-03-26 15:39 20M
md5sum.txt 2018-03-26 15:40 244
axtRBestNet/ 2018-03-26 17:43 -