This directory contains compressed phastCons scores for multiple
alignments of the following assemblies to the human genome
(hg17, May 2004):
- chimp (Nov 2003, panTro1)
- mouse (Aug 2005, mm7)
- rat (Jun 2003, rn3)
- rabbit (May 2005, oryCun1)
- macaque (Jan 2006, rheMac2)
- dog (May 2005, canFam2)
- cow (Mar 2005, bosTau2)
- armadillo (May 2005, dasNov1)
- elephant (May 2005, loxAfr1)
- tenrec (Jul 2005, echTel1)
- opossum (Jun 2005, monDom2)
- chicken (Feb 2004, galGal2)
- frog (Oct 2004, xenTro1)
- zebrafish (May 2005, danRer3)
- tetraodon (Feb 2004, tetNig1)
- fugu (Aug 2002, fr1)
For a description of the phastCons file format, see
http://genome.ucsc.edu/goldenPath/help/phastCons.html.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/hg17/phastCons. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
For data use restrictions regarding the genome assemblies used in this
annotation, see http://genome.ucsc.edu/goldenPath/credits.html.
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References for phastCons:
Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M.,
Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S.,
Weinstock, G.M., Wilson, R. K., Gibbs, R.A., Kent, W.J., Miller, W.,
and Haussler, D. Evolutionarily conserved elements in vertebrate, insect,
worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005).
(http://www.genome.org/cgi/doi/10.1101/gr.3715005)
Siepel, A. and Haussler, D. Phylogenetic hidden Markov models.
In R. Nielsen, ed., Statistical Methods in Molecular Evolution,
Springer (in press) (2004).
For a discussion of the methods used to calculate the phastCons scores,
see the description page for the hg17 Conservation track in the Genome
Browser.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2006-04-14 10:55 2.1K
chrY.gz 2006-04-13 18:42 6.3M
chrX_random.gz 2006-04-13 18:42 614K
chrX.gz 2006-04-13 18:42 77M
chrM.gz 2006-04-13 18:41 18K
chr22_random.gz 2006-04-13 18:32 105K
chr22.gz 2006-04-13 18:32 14M
chr21.gz 2006-04-13 18:32 17M
chr20.gz 2006-04-13 18:32 30M
chr19_random.gz 2006-04-13 18:30 38K
chr19.gz 2006-04-13 18:30 20M
chr18_random.gz 2006-04-13 18:30 3.9K
chr18.gz 2006-04-13 18:30 40M
chr17_random.gz 2006-04-13 18:30 694K
chr17.gz 2006-04-13 18:30 39M
chr16_random.gz 2006-04-13 18:29 33K
chr16.gz 2006-04-13 18:29 37M
chr15_random.gz 2006-04-13 18:29 321K
chr15.gz 2006-04-13 18:29 44M
chr14.gz 2006-04-13 18:28 48M
chr13_random.gz 2006-04-13 18:28 78K
chr13.gz 2006-04-13 18:28 52M
chr12_random.gz 2006-04-13 18:27 206K
chr12.gz 2006-04-13 18:27 69M
chr11.gz 2006-04-13 18:26 68M
chr10_random.gz 2006-04-13 18:25 43K
chr10.gz 2006-04-13 18:25 68M
chr9_random.gz 2006-04-13 18:41 275K
chr9.gz 2006-04-13 18:41 62M
chr8_random.gz 2006-04-13 18:40 188K
chr8.gz 2006-04-13 18:40 74M
chr7_random.gz 2006-04-13 18:39 204K
chr7.gz 2006-04-13 18:39 80M
chr6_random.gz 2006-04-13 18:38 859K
chr6_hla_hap2.gz 2006-04-13 18:38 49K
chr6_hla_hap1.gz 2006-04-13 18:38 46K
chr6.gz 2006-04-13 18:38 92M
chr5_random.gz 2006-04-13 18:37 45K
chr5.gz 2006-04-13 18:37 95M
chr4_random.gz 2006-04-13 18:36 263K
chr4.gz 2006-04-13 18:36 101M
chr3_random.gz 2006-04-13 18:35 446K
chr3.gz 2006-04-13 18:35 107M
chr2_random.gz 2006-04-13 18:34 97K
chr2.gz 2006-04-13 18:34 130M
chr1_random.gz 2006-04-13 18:32 1.6M
chr1.gz 2006-04-13 18:32 120M