This directory contains compressed phastCons scores for multiple alignments of the following assemblies to the Human May 2004 (hg17) genome: - Chimp (panTro1, Nov. 2003) - Dog (canFam1, Jul. 2004) - Mouse (mm5, May 2004) - Rat (rn3, Jun. 2003) - Chicken (galGal2, Feb. 2004) - Zebrafish (danRer1, Nov. 2003) - Fugu (fr1, Aug. 2002) For a description of the phastCons data format, see http://genome.ucsc.edu/goldenPath/help/phastCons.html. ---------------------------------------------------------------------- References for phastCons: Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S., Weinstock, G.M., Wilson, R. K., Gibbs, R.A., Kent, W.J., Miller, W., and Haussler, D. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005). (http://www.genome.org/cgi/doi/10.1101/gr.3715005) Siepel, A. and Haussler, D. Phylogenetic hidden Markov models. In R. Nielsen, ed., Statistical Methods in Molecular Evolution, Springer (in press) (2004). For a discussion of the methods used to calculate the phastCons scores, see the description page for the hg17 Conservation track in the Genome Browser.
Name Last modified Size Description
Parent Directory - phastConsElements8way.txt.gz 2006-05-10 17:08 15M phastConsElements8way.sql 2006-05-10 17:08 630 md5sum.txt 2005-06-17 11:49 2.1K chrY.gz 2005-06-16 17:13 76M chrX_random.gz 2005-06-16 17:12 4.0M chrX.gz 2005-06-16 17:12 512M chrM.gz 2005-06-16 17:08 73K chr22_random.gz 2005-06-16 16:13 817K chr22.gz 2005-06-16 16:13 142M chr21.gz 2005-06-16 16:11 140M chr20.gz 2005-06-16 16:10 245M chr19_random.gz 2005-06-16 15:59 627K chr19.gz 2005-06-16 15:59 214M chr18.gz 2005-06-16 15:57 308M chr17_random.gz 2005-06-16 15:54 6.8M chr17.gz 2005-06-16 15:54 320M chr16_random.gz 2005-06-16 15:50 390K chr16.gz 2005-06-16 15:50 323M chr15_random.gz 2005-06-16 15:47 2.3M chr15.gz 2005-06-16 15:47 338M chr14.gz 2005-06-16 15:44 364M chr13_random.gz 2005-06-16 15:41 746K chr13.gz 2005-06-16 15:41 396M chr12_random.gz 2005-06-16 15:37 1.7M chr12.gz 2005-06-16 15:37 534M chr11.gz 2005-06-16 15:32 536M chr10_random.gz 2005-06-16 15:27 371K chr10.gz 2005-06-16 15:27 544M chr9_random.gz 2005-06-16 17:08 2.4M chr9.gz 2005-06-16 17:07 484M chr8_random.gz 2005-06-16 17:03 1.6M chr8.gz 2005-06-16 17:03 586M chr7_random.gz 2005-06-16 16:57 2.4M chr7.gz 2005-06-16 16:57 636M chr6_random.gz 2005-06-16 16:51 7.0M chr6_hla_hap2.gz 2005-06-16 16:51 436K chr6.gz 2005-06-16 16:51 695M chr5_random.gz 2005-06-16 16:44 490K chr5.gz 2005-06-16 16:44 734M chr4_random.gz 2005-06-16 16:37 2.9M chr4.gz 2005-06-16 16:37 775M chr3_random.gz 2005-06-16 16:30 3.1M chr3.gz 2005-06-16 16:30 813M chr2_random.gz 2005-06-16 16:22 1.1M chr2.gz 2005-06-16 16:22 1.0G chr1_random.gz 2005-06-16 16:08 12M chr1.gz 2005-06-16 16:08 930M