This directory contains zipped multiple alignments of the Human genome (hg17, May 2004) to the following assemblies: - Chimp Nov. 2003 (panTro1) - Mouse May 2004 (mm5) - Rat Jun. 2003 (rn3) - Dog Jul. 2004 (canFam1) - Chicken Feb. 2004 (galGal2) - Fugu Aug. 2002 (fr1) - Zebrafish Nov. 2003 (danRer1) The chr*.maf.gz files each contain all the alignments to that particular human chromosome. The upstream*.maf.gz files contain alignments in regions upstream of annotated transcription start for RefSeq genes with annotated 5' UTRs. These files differ from the standard MAF format: they display alignments that extend from start to end of the upstream region in human, whether or not alignments actually exist. In situations where no alignments exist or the alignments of one or more species are missing, dot (".") is used as a placeholder. Multiple regions of an assembly's sequence may align to a single region in human; therefore, only the species name is displayed in the alignment data and no position information is recorded. The alignment score is always zero in these files. For a description of the multiple alignment format (MAF), see http://genome.ucsc.edu/goldenPath/help/maf.html. ------------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/hg17/multiz8way/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the files in this directory are freely available for public use. For data restrictions regarding the chimp, dog, chicken, fugu, and zebrafish genomes, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory - chr2.maf.gz 2004-07-20 14:57 246M chr1.maf.gz 2004-07-20 14:51 233M chr3.maf.gz 2004-07-20 14:58 203M chr4.maf.gz 2004-07-20 14:59 186M chr5.maf.gz 2004-07-20 15:00 182M multiz8way.txt.gz 2006-04-25 10:51 175M chr6.maf.gz 2004-07-20 15:01 172M chr7.maf.gz 2004-07-20 15:02 156M chr8.maf.gz 2004-07-20 15:02 144M chr10.maf.gz 2004-07-20 14:51 138M chr11.maf.gz 2004-07-20 14:52 137M chr12.maf.gz 2004-07-20 14:53 133M chrX.maf.gz 2004-07-20 15:03 121M chr9.maf.gz 2004-07-20 15:03 121M chr13.maf.gz 2004-07-20 14:53 95M chr14.maf.gz 2004-07-20 14:54 92M chr15.maf.gz 2004-07-20 14:54 88M chr17.maf.gz 2004-07-20 14:55 86M chr16.maf.gz 2004-07-20 14:55 84M chr18.maf.gz 2004-07-20 14:55 76M chr20.maf.gz 2004-07-20 14:57 63M chr19.maf.gz 2004-07-20 14:56 52M chr22.maf.gz 2004-07-20 14:57 36M chr21.maf.gz 2004-07-20 14:57 33M chrY.maf.gz 2004-07-20 15:04 15M chr1_random.maf.gz 2004-07-20 14:56 3.1M chr6_random.maf.gz 2004-07-20 15:01 1.7M chr17_random.maf.gz 2004-07-20 14:55 1.7M chrX_random.maf.gz 2004-07-20 15:03 946K chr3_random.maf.gz 2004-07-20 14:58 889K chr15_random.maf.gz 2004-07-20 14:54 756K chr4_random.maf.gz 2004-07-20 14:59 699K chr9_random.maf.gz 2004-07-20 15:03 540K chr7_random.maf.gz 2004-07-20 15:02 517K chr12_random.maf.gz 2004-07-20 14:53 402K chr8_random.maf.gz 2004-07-20 15:02 397K chr2_random.maf.gz 2004-07-20 14:57 266K chr22_random.maf.gz 2004-07-20 14:57 243K chr13_random.maf.gz 2004-07-20 14:53 221K chr19_random.maf.gz 2004-07-20 14:56 168K chr6_hla_hap2.maf.gz 2004-07-20 15:01 116K chr5_random.maf.gz 2004-07-20 15:00 104K chr10_random.maf.gz 2004-07-20 14:51 98K chr16_random.maf.gz 2004-07-20 14:55 75K chrM.maf.gz 2004-07-20 15:03 46K md5sum.txt 2006-04-21 15:40 2.2K multiz8way.sql 2006-04-25 10:46 631 chr18_random.maf.gz 2004-07-20 14:55 188 chr6_hla_hap1.maf.gz 2004-07-20 15:01 183