This directory contains the Build 31 human genome assembly.
The chromosomal sequences were assembled by the International
Human Genome Project sequencing centers and verified by NCBI
and UCSC. Each chromosome is in a separate file in a zipped Fasta
format. Repeats -- which are shown in lower case -- are annotated
by RepeatMasker run at the sensitive setting and Tandem Repeats
Finder (repeats of period 12 or less).
The main assembly is contained in the chrN.fa files, where
N is the name of the chromosome. The chrN_random.fa files
contain clones that are not yet finished or cannot be placed
with certainty at a specific place on the chromosome. In some
cases, including the human HLA region on chromosome 6, the
chrN_random.fa files also contain different haplotypes from
the main assembly.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgarchive.cse.ucsc.edu, then go to the directory
goldenPath/14nov2002/chromosomes. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Name Last modified Size Description
Parent Directory -
chr1.fa.zip 2002-12-04 17:26 69M
chr2.fa.zip 2002-12-04 17:29 74M
chr3.fa.zip 2002-12-04 17:32 61M
chr4.fa.zip 2002-12-04 17:34 59M
chr5.fa.zip 2002-12-04 17:37 56M
chr6.fa.zip 2002-12-04 17:39 52M
chr7.fa.zip 2002-12-04 17:41 48M
chr8.fa.zip 2002-12-04 17:43 45M
chr9.fa.zip 2002-12-04 17:44 37M
chrM.fa.zip 2002-12-04 17:44 5.5K
chrX.fa.zip 2002-12-04 17:46 46M
chr1_random.fa.zip 2002-12-04 17:47 155K
chr2_random.fa.zip 2002-12-04 17:47 45K
chrY.fa.zip 2002-12-04 17:47 7.0M
chr3_random.fa.zip 2002-12-04 17:47 172K
chr4_random.fa.zip 2002-12-04 17:47 237K
chr6_random.fa.zip 2002-12-04 17:47 2.8M
chr8_random.fa.zip 2002-12-04 17:47 132K
chr9_random.fa.zip 2002-12-04 17:47 12K
chr10.fa.zip 2002-12-04 17:49 41M
chr11.fa.zip 2002-12-04 17:51 41M
chr12.fa.zip 2002-12-04 17:52 40M
chr13.fa.zip 2002-12-04 17:54 30M
chr14.fa.zip 2002-12-04 17:55 28M
chr15.fa.zip 2002-12-04 17:56 26M
chr16.fa.zip 2002-12-04 17:57 25M
chr17.fa.zip 2002-12-04 17:58 25M
chr18.fa.zip 2002-12-04 17:59 23M
chr19.fa.zip 2002-12-04 18:00 17M
chr20.fa.zip 2002-12-04 18:00 19M
chr21.fa.zip 2002-12-04 18:01 11M
chr10_random.fa.zip 2002-12-04 18:01 44K
chr11_random.fa.zip 2002-12-04 18:01 337K
chr12_random.fa.zip 2002-12-04 18:01 326K
chr14_random.fa.zip 2002-12-04 18:01 19K
chr15_random.fa.zip 2002-12-04 18:01 201K
chr16_random.fa.zip 2002-12-04 18:01 88K
chr17_random.fa.zip 2002-12-04 18:01 343K
chr19_random.fa.zip 2002-12-04 18:01 60K
chrUn_random.fa.zip 2002-12-04 18:01 870K
chr22.fa.zip 2003-02-03 17:22 10M