This directory contains reciprocal-best netted chains for gorGor5-panTro4.
- gorGor5.panTro4.rbest.net.gz: gorGor5-referenced recip.best net to panTro4.
- gorGor5.panTro4.rbest.chain.gz: chains extracted from the recip.best
net. These can be passed to the liftOver program to translate coords
from gorGor5 to panTro4 through the recip.best net.
- panTro4.gorGor5.rbest.net.gz: panTro4-referenced recip.best net.
- panTro4.gorGor5.rbest.chain.gz: recip.best "liftOver" chains.
- axtRBestNet/gorGor5.panTro4.rbest.axt.gz reciprocal best alignments in
AXT format
See also, description of AXT format::
http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
http://genome.ucsc.edu/goldenPath/help/net.html
Name Last modified Size Description
Parent Directory -
axtRBestNet/ 2016-08-03 11:01 -
gorGor5.panTro4.rbest.chain.gz 2016-08-03 08:35 18M
gorGor5.panTro4.rbest.net.gz 2016-08-03 08:36 25M
md5sum.txt 2016-08-03 08:36 256
panTro4.gorGor5.rbest.chain.gz 2016-08-03 08:35 18M
panTro4.gorGor5.rbest.net.gz 2016-08-03 08:34 38M