This directory contains compressed multiple alignments of the
following assemblies to the stickleback genome (gasAcu1, Feb 2006):
- human (Mar 2006, hg18)
- mouse (Feb 2006, mm8)
- chicken (May 2006, galGal3)
- tetraodon (Feb 2004, tetNig1)
- fugu (Oct 2004, fr2)
- medaka (Oct 2005, oryLat1)
- zebrafish (Mar 2006, danRer4)
Files included in this directory:
- chr*.maf.gz files: each contain all the alignments to that
particular stickleback chromosome.
- ensGene.upstream*.maf.gz: alignments to regions (1000, 2000 and 5000) bases
upstream of stickleback Ensembl genes.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/gasAcu1/multiz8way. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the individual
genome assemblies, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
maf/ 2019-11-06 10:57 -
md5sum.txt 2009-08-13 10:27 1.2K
ensGene.upstream5000.maf.gz 2009-08-13 10:14 41M
ensGene.upstream2000.maf.gz 2009-08-13 10:11 14M
ensGene.upstream1000.maf.gz 2009-08-13 10:07 6.9M
chrXXI.maf.gz 2007-03-27 12:20 15M
chrXX.maf.gz 2007-03-27 12:20 26M
chrXVIII.maf.gz 2007-03-27 12:20 20M
chrXVII.maf.gz 2007-03-27 12:20 18M
chrXVI.maf.gz 2007-03-27 12:19 23M
chrXV.maf.gz 2007-03-27 12:19 21M
chrXIX.maf.gz 2007-03-27 12:19 27M
chrXIV.maf.gz 2007-03-27 12:19 19M
chrXIII.maf.gz 2007-03-27 12:18 26M
chrXII.maf.gz 2007-03-27 12:18 24M
chrXI.maf.gz 2007-03-27 12:18 22M
chrX.maf.gz 2007-03-27 12:18 19M
chrVIII.maf.gz 2007-03-27 12:17 24M
chrVII.maf.gz 2007-03-27 12:17 33M
chrVI.maf.gz 2007-03-27 12:17 22M
chrV.maf.gz 2007-03-27 12:17 16M
chrUn.maf.gz 2007-03-27 12:16 65M
chrM.maf.gz 2007-03-27 12:16 37K
chrIX.maf.gz 2007-03-27 12:16 26M
chrIV.maf.gz 2007-03-27 12:15 40M
chrIII.maf.gz 2007-03-27 12:15 22M
chrII.maf.gz 2007-03-27 12:15 29M
chrI.maf.gz 2007-03-27 12:15 35M